Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005208

Physical Location & Seq

Genomic Coordinates Forward (+)

36755669 .. 36756807

Gene Structure 1139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG351700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCAAGAAACCCCTCGTCAACAAGCACAAGCCTAAGCCTACCAAGCTCAGGGCCATTTAAGATTAATGGTGTTCCTTTGAGACGTGTGAATCAGTCCTATGTGATCGGCACTTCCACCAAGGTCAACATTTCTGGGGTTAATGTGGATAAGTTTGATGACAAGTATTTCGCCAAGGCATTGGAAAAGAAGAAGAAGAAGGGTGAGGGAGAGTTTTTTGAGGCAGAGAAAGAGGACAAGAACAAGCTCCCAGAAGAAAGGAAAGATGATCAGAAGAGTGTGGATGCTTCTTTGATAAAGTCTATTGAGGCTGTCCCGGACTTGAAGACATACTTGGCTGCCAGATTCTCTCTTAGGTCTGGCATGAAGCCTCATGAGCTTGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

129

Amino Acids

14.4

Weight (kDa)

9.49

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e	PF01159	22 - 129	1.2e-41	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005208)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345461 RchiOBHm_Chr2g0159091 RchiOBHm_Chr7g0216831
rosa_laevigata	RLG00000008531 RLG00000013481 RLG00000017164 RLG00000017441 RLG00000029877 RLG00000034337
rosa_multiflora	Rmu_co8412677.1_g000001 Rmu_sc0006599.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235500 Rroxscaffold_4G00316480 Rroxscaffold_7G00212320
rosa_samantha	Rh1AG010200 Rh1BG065200 Rh1CG021200 Rh1CG127000 Rh1CG321700 Rh2BG577300 Rh3AG234900 Rh3CG253700 Rh3CG264700 Rh4AG159800 Rh4CG171800 Rh5AG424100 Rh7BG351700 Rh7BG387000
rosa_wichuraiana	Rw4G001300 Rw4G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	325
AjiI	CACGTC	1 cut(s)	86
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	3 cut(s)	48, 247, 379
AluI	AGCT	3 cut(s)	48, 247, 379
Alw26I	GTCTC	1 cut(s)	76
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AseI	ATTAAT	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	325
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	332
Bpu10I	CCTNAGC	2 cut(s)	35, 49
BpuMI	CCSGG	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	120, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	120, 174
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	76
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	105, 268
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	120, 174
BssMI	GATC	2 cut(s)	105, 268
BssT1I	CCWWGG	2 cut(s)	120, 174
Bst6I	CTCTTC	1 cut(s)	269
BstDEI	CTNAG	3 cut(s)	35, 49, 353
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	2 cut(s)	108, 271
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	2 cut(s)	105, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 376
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	55
BtrI	CACGTC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	289
CciI	TCATGA	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	53
CviAII	CATG	2 cut(s)	364, 374
CviJI	RGCY	9 cut(s)	33, 39, 48, 55, 247, 311, 338, 370, 379
CviKI_1	RGCY	9 cut(s)	33, 39, 48, 55, 247, 311, 338, 370, 379
DdeI	CTNAG	3 cut(s)	35, 49, 353
DpnI	GATC	2 cut(s)	107, 270
DpnII	GATC	2 cut(s)	105, 268
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	120, 174
EcoT14I	CCWWGG	2 cut(s)	120, 174
ErhI	CCWWGG	2 cut(s)	120, 174
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	2 cut(s)	367, 377
FaiI	YATR	4 cut(s)	102, 331, 365, 375
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	363, 373
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	2 cut(s)	367, 377
HincII	GTYRAC	2 cut(s)	21, 127
HindII	GTYRAC	2 cut(s)	21, 127
HinfI	GANTC	2 cut(s)	91, 345
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	21, 127
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	2 cut(s)	6, 374
Hpy8I	GTNNAC	2 cut(s)	21, 127
HpyAV	CCTTC	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 376
HpyF3I	CTNAG	3 cut(s)	35, 49, 353
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	367, 377
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	105, 268
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	6 cut(s)	36, 120, 264, 330, 345, 355
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	85
MalI	GATC	2 cut(s)	107, 270
MboI	GATC	2 cut(s)	105, 268
MboII	GAAGA	6 cut(s)	202, 205, 208, 266, 286, 337
MnlI	CCTC	6 cut(s)	25, 199, 214, 226, 301, 381
MseI	TTAA	3 cut(s)	60, 66, 141
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	45, 376
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	105, 268
NlaIII	CATG	2 cut(s)	367, 377
PagI	TCATGA	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	91, 345
PfoI	TCCNGGA	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	340
PshBI	ATTAAT	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	60, 66, 141
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	2 cut(s)	105, 268
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	6 cut(s)	50, 88, 126, 249, 359, 381
SfaNI	GCATC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	120, 174
TaiI	ACGT	1 cut(s)	88
TfiI	GAWTC	2 cut(s)	91, 345
Tru1I	TTAA	3 cut(s)	60, 66, 141
Tru9I	TTAA	3 cut(s)	60, 66, 141
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	380
VspI	ATTAAT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.