Rh4AG159800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005208
Physical Location & Seq
Reverse (-)
40666359 .. 40679805
13447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG159800.1

Sequence Viewer

Length: 336 bp
ATGCAGTTTAAATTTGTAGGAGTGATGTACTTCTCCAATATAGGGCGATTAATTGATGATTGCAAGGTTCTTGCAGCTGAGGTTAGTGAAGTGAAGAGGGGAACCAGACCCACAAGCGAAAGACACAAGCTTTTGTCAATTTTGGATCAGATTCAAGGAATTGAAGTTGAAGCTGGAAGTGGGTCTCGATCTGGGTCTCCAGGATTTGCTTTGAGCTTTTTGATTTGGGGATTCAAAGGTGCCATGTTTTTGGTGAGATTGTGCTTCTCTGATGGACCCAAACGTTGTACAGTCTTCGAGGAGATACAGAGTTCAAGCTCCATTGATTCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.26

Weight (kDa)

7.71

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AclI AACGTT 1 cut(s) 283
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 11
AfaI GTAC 2 cut(s) 29, 289
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 5 cut(s) 155, 164, 170, 235, 315
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 5 cut(s) 77, 130, 173, 216, 318
AluI AGCT 5 cut(s) 77, 130, 173, 216, 318
Alw26I GTCTC 2 cut(s) 189, 201
AlwI GGATC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 11
AseI ATTAAT 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 275
BanI GGYRCC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 286
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 189, 201
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 103, 241, 277
BmrFI CCNGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 78
BsaI GGTCTC 2 cut(s) 189, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 2 cut(s) 189, 201
Bso31I GGTCTC 2 cut(s) 189, 201
Bsp1407I TGTACA 1 cut(s) 287
Bsp143I GATC 2 cut(s) 145, 188
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 3 cut(s) 103, 241, 277
BspPI GGATC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 239
BspTNI GGTCTC 2 cut(s) 189, 201
BsrGI TGTACA 1 cut(s) 287
BssMI GATC 2 cut(s) 145, 188
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 78
BstKTI GATC 2 cut(s) 148, 191
BstMAI GTCTC 2 cut(s) 189, 201
BstMBI GATC 2 cut(s) 145, 188
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 28, 288
CviAII CATG 1 cut(s) 244
CviJI RGCY 5 cut(s) 77, 130, 173, 216, 318
CviKI_1 RGCY 5 cut(s) 77, 130, 173, 216, 318
CviQI GTAC 2 cut(s) 28, 288
DdeI CTNAG 1 cut(s) 78
DpnI GATC 2 cut(s) 147, 190
DpnII GATC 2 cut(s) 145, 188
DraI TTTAAA 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco31I GGTCTC 2 cut(s) 189, 201
Eco47I GGWCC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 247
FaiI YATR 2 cut(s) 41, 245
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 183
Hin1II CATG 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 151, 231, 326
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 2 cut(s) 150, 271
Hpy188III TCNNGA 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 4, 63, 74
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 2 cut(s) 145, 188
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 5 cut(s) 118, 159, 177, 186, 213
Lsp1109I GCAGC 1 cut(s) 86
MaeII ACGT 1 cut(s) 283
MalI GATC 2 cut(s) 147, 190
MboI GATC 2 cut(s) 145, 188
MboII GAAGA 2 cut(s) 106, 286
MluCI AATT 4 cut(s) 11, 51, 138, 159
MnlI CCTC 3 cut(s) 73, 90, 292
MseI TTAA 2 cut(s) 9, 50
MspA1I CMGCKG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
NdeII GATC 2 cut(s) 145, 188
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 3 cut(s) 103, 241, 277
PfeI GAWTC 3 cut(s) 151, 231, 326
PfoI TCCNGGA 1 cut(s) 199
PkrI GCNGC 1 cut(s) 76
PshBI ATTAAT 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 103, 241, 277
PspPI GGNCC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 2 cut(s) 29, 289
RsaNI GTAC 2 cut(s) 28, 288
SaqAI TTAA 2 cut(s) 9, 50
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 145, 188
Sau96I GGNCC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 201
SetI ASST 9 cut(s) 69, 79, 84, 132, 175, 218, 241, 286, 320
SinI GGWCC 1 cut(s) 275
Sse9I AATT 4 cut(s) 11, 51, 138, 159
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 187, 297
TasI AATT 4 cut(s) 11, 51, 138, 159
TatI WGTACW 2 cut(s) 27, 287
TfiI GAWTC 3 cut(s) 151, 231, 326
Tru1I TTAA 2 cut(s) 9, 50
Tru9I TTAA 2 cut(s) 9, 50
TseI GCWGC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 50
XapI RAATTY 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.