Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005208

Physical Location & Seq

Genomic Coordinates Forward (+)

27990258 .. 27997041

Gene Structure 6784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG127000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTCTTTTGCTAACTTCCGCAGCCAGAACCTGCAACGGCACATGGCGAAGAGTCCCCACCCCCAACCACCCCCCCCCCTCTCTCTCATAGTCTCATCCACGCACTCTCTCGGTCGCTTCACCAAATATTGGATTCCAAAGTCTCTGAGCACGCTATCTGGTGCGGTTCTCGGATCGTCGTCTTCGGTGACGCAATTGAAGAGGAAGCGGCCGGTGAAGCTTCGCATTCCGACTGTATCGACGGGATTTGGGGCTGCTCCGGCGGCGTGGAGAGAGCTGGTGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

97

Amino Acids

10.65

Weight (kDa)

11.36

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005208)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345461 RchiOBHm_Chr2g0159091 RchiOBHm_Chr7g0216831
rosa_laevigata	RLG00000008531 RLG00000013481 RLG00000017164 RLG00000017441 RLG00000029877 RLG00000034337
rosa_multiflora	Rmu_co8412677.1_g000001 Rmu_sc0006599.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235500 Rroxscaffold_4G00316480 Rroxscaffold_7G00212320
rosa_samantha	Rh1AG010200 Rh1BG065200 Rh1CG021200 Rh1CG127000 Rh1CG321700 Rh2BG577300 Rh3AG234900 Rh3CG253700 Rh3CG264700 Rh4AG159800 Rh4CG171800 Rh5AG424100 Rh7BG351700 Rh7BG387000
rosa_wichuraiana	Rw4G001300 Rw4G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AccB7I	CCANNNNNTGG	1 cut(s)	129
AciI	CCGC	4 cut(s)	19, 164, 208, 263
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	2 cut(s)	220, 277
AluI	AGCT	2 cut(s)	220, 277
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	2 cut(s)	97, 147
AlwI	GGATC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	21, 254
AsuHPI	GGTGA	3 cut(s)	112, 199, 226
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	33, 241
BceAI	ACGGC	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	97, 147
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	4 cut(s)	22, 209, 255, 264
BlsI	GCNGC	4 cut(s)	23, 210, 256, 265
BpiI	GAAGAC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	211
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	137
BseX3I	CGGCCG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	33, 241
Bsh1285I	CGRYCG	2 cut(s)	115, 212
BshFI	GGCC	1 cut(s)	211
BsiEI	CGRYCG	2 cut(s)	115, 212
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	212, 260
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	2 cut(s)	97, 147
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	4 cut(s)	19, 164, 208, 263
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	211
BssMI	GATC	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	44, 194
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	95
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	2 cut(s)	97, 147
BstMBI	GATC	1 cut(s)	173
BstMCI	CGRYCG	2 cut(s)	115, 212
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 260, 263
BstV1I	GCAGC	2 cut(s)	33, 241
BstV2I	GAAGAC	1 cut(s)	174
BstZI	CGGCCG	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	95
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	152
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	211
CseI	GACGC	1 cut(s)	199
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	5 cut(s)	24, 211, 220, 254, 277
CviKI_1	RGCY	5 cut(s)	24, 211, 220, 254, 277
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	209
EagI	CGGCCG	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	44, 194
EarI	CTCTTC	2 cut(s)	44, 194
EclXI	CGGCCG	1 cut(s)	209
Eco52I	CGGCCG	1 cut(s)	209
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 89
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	22, 209, 255, 264
FokI	GGATG	1 cut(s)	82
Fsp4HI	GCNGC	4 cut(s)	22, 209, 255, 264
GluI	GCNGC	4 cut(s)	22, 209, 255, 264
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	2 cut(s)	212, 260
HgaI	GACGC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	2 cut(s)	52, 133
HpaII	CCGG	2 cut(s)	212, 260
HphI	GGTGA	3 cut(s)	112, 199, 226
Hpy188I	TCNGA	3 cut(s)	147, 173, 231
Hpy99I	CGWCG	2 cut(s)	181, 244
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 260, 263
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	6 cut(s)	38, 44, 144, 225, 263, 273
Lsp1109I	GCAGC	2 cut(s)	33, 241
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	3 cut(s)	61, 174, 211
MfeI	CAATTG	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	3 cut(s)	89, 195, 277
MspI	CCGG	2 cut(s)	212, 260
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	217, 260, 263
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	23, 210, 256, 265
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	31
SatI	GCNGC	4 cut(s)	22, 209, 255, 264
Sau3AI	GATC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	3 cut(s)	33, 222, 279
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	4 cut(s)	19, 164, 208, 263
SspI	AATATT	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	239
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	1 cut(s)	194
TauI	GCSGC	2 cut(s)	211, 266
TfiI	GAWTC	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	21, 254
Tsp45I	GTSAC	1 cut(s)	187
Van91I	CCANNNNNTGG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.