Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005208

Physical Location & Seq

Genomic Coordinates Forward (+)

32192274 .. 32193291

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013481

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATCACGCATCAATCCATTTGCTTTCTTCTGGCTTGCTTTTGGTCACTGGGCCATTTAAGATTAATGGTGTTCCTCTTAATTAGACGGGTGAACCAATCTTATGTTATTGGAACTTCAACCAAGGTTGACATCTCTGCTGTTAACGTGGAGAAGTTTGATGACAAGTACTTTGCTAAGGAGGGTCAAAAGAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAAGCGGAGAAGGAGGTGCTTCGATTCTTATTTCCGATGAGGGATGACTTGCCACTCAAGGATTCCTCCTCACAAGCAAAGACATGTTTTATAAAAGCCTGCTCCAAGTTCAAGATAGCTACCGAGTTTAAGAACTGTATAAAGCCCTACTCCAAGTTCGAGATACTTTCCAACTTTAAGAATCGAGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

139

Amino Acids

16.04

Weight (kDa)

9.4

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e	PF01159	28 - 79	6.5e-17	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005208)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345461 RchiOBHm_Chr2g0159091 RchiOBHm_Chr7g0216831
rosa_laevigata	RLG00000008531 RLG00000013481 RLG00000017164 RLG00000017441 RLG00000029877 RLG00000034337
rosa_multiflora	Rmu_co8412677.1_g000001 Rmu_sc0006599.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235500 Rroxscaffold_4G00316480 Rroxscaffold_7G00212320
rosa_samantha	Rh1AG010200 Rh1BG065200 Rh1CG021200 Rh1CG127000 Rh1CG321700 Rh2BG577300 Rh3AG234900 Rh3CG253700 Rh3CG264700 Rh4AG159800 Rh4CG171800 Rh5AG424100 Rh7BG351700 Rh7BG387000
rosa_wichuraiana	Rw4G001300 Rw4G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AciI	CCGC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	120, 224, 334
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
AoxI	GGCC	1 cut(s)	52
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AseI	ATTAAT	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	103
BclI	TGATCA	1 cut(s)	3
BmcAI	AGTACT	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	19, 400
BmuI	ACTGGG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	37, 322
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstNSI	RCATGY	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	37, 322
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	306
CviJI	RGCY	5 cut(s)	35, 54, 320, 341, 367
CviKI_1	RGCY	5 cut(s)	35, 54, 320, 341, 367
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	309
FaiI	YATR	4 cut(s)	105, 307, 314, 362
FatI	CATG	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	309
HincII	GTYRAC	2 cut(s)	130, 145
HindII	GTYRAC	2 cut(s)	130, 145
HinfI	GANTC	3 cut(s)	246, 284, 403
HpaI	GTTAAC	1 cut(s)	145
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	3 cut(s)	94, 130, 145
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	3 cut(s)	334, 382, 407
Hpy8I	GTNNAC	3 cut(s)	94, 130, 145
HpyAV	CCTTC	3 cut(s)	196, 203, 226
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	3 cut(s)	17, 35, 334
LweI	GCATC	2 cut(s)	19, 400
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	20, 205
MluCI	AATT	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	6 cut(s)	86, 175, 229, 255, 298, 301
MseI	TTAA	6 cut(s)	59, 65, 80, 144, 351, 399
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	45
NspI	RCATGY	1 cut(s)	309
PciI	ACATGT	1 cut(s)	305
PfeI	GAWTC	3 cut(s)	246, 284, 403
PscI	ACATGT	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	6 cut(s)	59, 65, 80, 144, 351, 399
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	52
ScaI	AGTACT	1 cut(s)	170
SetI	ASST	4 cut(s)	129, 150, 240, 343
SfaNI	GCATC	2 cut(s)	19, 400
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	244, 381, 406
TasI	AATT	1 cut(s)	81
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	3 cut(s)	246, 284, 403
Tru1I	TTAA	6 cut(s)	59, 65, 80, 144, 351, 399
Tru9I	TTAA	6 cut(s)	59, 65, 80, 144, 351, 399
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	45
TspRI	CASTG	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	65
XceI	RCATGY	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.