Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006599.1

Orthogroup ID

OG0005208

Physical Location & Seq

Genomic Coordinates Reverse (-)

5740 .. 7358

Gene Structure 1619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006599.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgctagctggtgctgttctcgaatcgtcgtctccggtgacgcaattgaagaggaagcggtcggcgaagctttgcattccgattgtatcgacgagatttggggctgctccggggacaccgtctatggcggcgtggagagagttgtgttcctttgagacgtgtgaattagtcctatgtgattggccttccaccaaggtcgatatttctggggttaatgtggaaaaatttgatgacaagtatttcggaaaggctgtggaaaagaagaagaagaagggggagggagagttttttgaggcagagaaagaggacaagaaagtgttcccacaagagaggaaagatgatcagaatagtgtggatgcttcgttgataaagtccattgacgttgtcccagacttgaagacatacttagttgcaagattctctctgaggtctaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

145

Amino Acids

16.18

Weight (kDa)

8.63

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005208)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0345461 RchiOBHm_Chr2g0159091 RchiOBHm_Chr7g0216831
rosa_laevigata	RLG00000008531 RLG00000013481 RLG00000017164 RLG00000017441 RLG00000029877 RLG00000034337
rosa_multiflora	Rmu_co8412677.1_g000001 Rmu_sc0006599.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235500 Rroxscaffold_4G00316480 Rroxscaffold_7G00212320
rosa_samantha	Rh1AG010200 Rh1BG065200 Rh1CG021200 Rh1CG127000 Rh1CG321700 Rh2BG577300 Rh3AG234900 Rh3CG253700 Rh3CG264700 Rh4AG159800 Rh4CG171800 Rh5AG424100 Rh7BG351700 Rh7BG387000
rosa_wichuraiana	Rw4G001300 Rw4G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	58, 128
AcsI	RAATTY	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	49, 397
AjiI	CACGTC	1 cut(s)	159
AluBI	AGCT	2 cut(s)	8, 70
AluI	AGCT	2 cut(s)	8, 70
Alw26I	GTCTC	2 cut(s)	36, 149
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
Asp700I	GAANNNNTTC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	49
AsuNHI	GCTAGC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	91
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	36, 149
BfaI	CTAG	1 cut(s)	5
BisI	GCNGC	2 cut(s)	105, 129
BlsI	GCNGC	2 cut(s)	106, 130
Bme1390I	CCNGG	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	346
BmtI	GCTAGC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	110, 192
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
BseDI	CCNNGG	2 cut(s)	110, 192
BseGI	GGATG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	184
BsiEI	CGRYCG	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	35, 110
BslFI	GGGAC	2 cut(s)	127, 371
BsmAI	GTCTC	2 cut(s)	36, 149
BsmBI	CGTCTC	2 cut(s)	36, 149
BsmFI	GGGAC	2 cut(s)	127, 371
BsmI	GAATGC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	2 cut(s)	58, 128
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	417
BspOI	GCTAGC	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	110, 192
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	406, 425
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	2 cut(s)	36, 149
BstMBI	GATC	1 cut(s)	340
BstMCI	CGRYCG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	49
CviJI	RGCY	5 cut(s)	8, 70, 104, 184, 251
CviKI_1	RGCY	5 cut(s)	8, 70, 104, 184, 251
DdeI	CTNAG	2 cut(s)	406, 425
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	2 cut(s)	36, 149
FaiI	YATR	3 cut(s)	125, 175, 403
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	2 cut(s)	127, 371
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	105, 129
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	2 cut(s)	105, 129
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	2 cut(s)	105, 129
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	2 cut(s)	35, 110
HgaI	GACGC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	23, 417
HpaII	CCGG	2 cut(s)	35, 110
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	4 cut(s)	81, 245, 345, 426
Hpy188III	TCNNGA	1 cut(s)	20
Hpy99I	CGWCG	2 cut(s)	31, 94
HpyAV	CCTTC	2 cut(s)	195, 265
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4IV	ACGT	2 cut(s)	158, 381
HpyCH4V	TGCA	2 cut(s)	75, 413
HpyF3I	CTNAG	2 cut(s)	406, 425
HpySE526I	ACGT	2 cut(s)	158, 381
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	4 cut(s)	48, 123, 192, 402
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	2 cut(s)	158, 381
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	5 cut(s)	61, 274, 277, 280, 409
MfeI	CAATTG	1 cut(s)	44
MluCI	AATT	4 cut(s)	44, 164, 224, 433
MnlI	CCTC	6 cut(s)	45, 271, 286, 298, 324, 420
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	213
MspI	CCGG	2 cut(s)	35, 110
MspR9I	CCNGG	1 cut(s)	111
MunI	CAATTG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	340
NheI	GCTAGC	1 cut(s)	4
NmuCI	GTSAC	1 cut(s)	37
PctI	GAATGC	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	23, 417
PflFI	GACNNNGTC	2 cut(s)	118, 383
PkrI	GCNGC	2 cut(s)	106, 130
PsyI	GACNNNGTC	2 cut(s)	118, 383
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	105, 129
Sau3AI	GATC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	6 cut(s)	10, 72, 161, 198, 384, 431
SfaNI	GCATC	1 cut(s)	346
Sse9I	AATT	4 cut(s)	44, 164, 224, 433
SsiI	CCGC	2 cut(s)	58, 128
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	120
TaiI	ACGT	2 cut(s)	161, 384
TaqI	TCGA	3 cut(s)	21, 89, 198
TasI	AATT	4 cut(s)	44, 164, 224, 433
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	23, 417
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	37
Tth111I	GACNNNGTC	2 cut(s)	118, 383
XapI	RAATTY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.