RchiOBHm_Chr2g0143801
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
61436288 .. 61439646
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51387

Sequence Viewer

Length: 987 bp
ATGTTCCATATTTACATCATTGACTTCGGCCTCGCTAAGAAGTATAGAGACACATCAACCCATCAGCATATTCCTTATAGAGATAATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAAGCCGAAGCGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAACCAGATTATGGTTATCTGAAGAGATTGTTTCATGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGATGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAACGATCCATCTGTGTCTAAAGACGCAATGTTTTTTGCGGTCAACTGGATCATCAAGGGGGCTGTAGTTTATAGCAGTTGGGATGCAGTAATTGTTGGCAGTGAATCCGAGCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCAGTTGTATCTTCAGAGCAGAATCGTACCACTTCTGGTAGAAATATTTCGACCGTAAAAAACTTAGAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTAAATAGCAACGAGAGAGTACAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

328

Amino Acids

36.77

Weight (kDa)

9.36

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 374, 521
AccII CGCG 1 cut(s) 414
AciI CCGC 1 cut(s) 713
AclWI GGATC 3 cut(s) 596, 674, 731
AcsI RAATTY 4 cut(s) 91, 317, 619, 834
AcuI CTGAAG 2 cut(s) 404, 855
AfaI GTAC 3 cut(s) 191, 886, 978
AfiI CCNNNNNNNGG 4 cut(s) 218, 374, 521, 612
AgsI TTSAA 4 cut(s) 143, 226, 457, 551
AjnI CCWGG 3 cut(s) 499, 640, 817
AluBI AGCT 2 cut(s) 519, 648
AluI AGCT 2 cut(s) 519, 648
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 2 cut(s) 42, 941
AlwI GGATC 3 cut(s) 596, 674, 731
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 28, 291
ApoI RAATTY 4 cut(s) 91, 317, 619, 834
Asp700I GAANNNNTTC 2 cut(s) 420, 904
AspS9I GGNCC 2 cut(s) 512, 626
AsuHPI GGTGA 1 cut(s) 849
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 2 cut(s) 512, 626
BanII GRGCYC 1 cut(s) 789
BarI GAAGNNNNNNTAC 2 cut(s) 823, 855
BauI CACGAG 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 499
BccI CCATC 2 cut(s) 69, 691
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 3 cut(s) 501, 642, 819
BcoDI GTCTC 2 cut(s) 42, 941
BfaI CTAG 1 cut(s) 827
BfmI CTRYAG 2 cut(s) 340, 738
BglII AGATCT 1 cut(s) 344
Bme1390I CCNGG 3 cut(s) 501, 642, 819
Bme18I GGWCC 2 cut(s) 512, 626
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 512, 626
BmrFI CCNGG 3 cut(s) 501, 642, 819
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 748
BmuI ACTGGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 516
BsaAI YACGTR 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 941
BsaJI CCNNGG 2 cut(s) 212, 301
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bsc4I CCNNNNNNNGG 4 cut(s) 218, 374, 521, 612
Bse1I ACTGG 5 cut(s) 103, 533, 589, 725, 860
Bse3DI GCAATG 1 cut(s) 708
BseBI CCWGG 3 cut(s) 501, 642, 819
BseDI CCNNGG 2 cut(s) 212, 301
BseGI GGATG 2 cut(s) 453, 763
BseLI CCNNNNNNNGG 4 cut(s) 218, 374, 521, 612
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 1 cut(s) 949
BseNI ACTGG 5 cut(s) 103, 533, 589, 725, 860
Bsh1236I CGCG 1 cut(s) 414
Bsh1285I CGRYCG 1 cut(s) 912
BshFI GGCC 2 cut(s) 30, 293
BsiEI CGRYCG 1 cut(s) 912
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 4 cut(s) 218, 374, 521, 612
BsmAI GTCTC 2 cut(s) 42, 941
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 2 cut(s) 30, 293
Bso31I GGTCTC 1 cut(s) 941
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 499, 789
Bsp143I GATC 7 cut(s) 160, 258, 344, 450, 601, 679, 723
Bsp19I CCATGG 1 cut(s) 212
Bsp68I TCGCGA 1 cut(s) 414
BspACI CCGC 1 cut(s) 713
BspANI GGCC 2 cut(s) 30, 293
BspCNI CTCAG 1 cut(s) 948
BspFNI CGCG 1 cut(s) 414
BspHI TCATGA 1 cut(s) 397
BspPI GGATC 3 cut(s) 596, 674, 731
BspTNI GGTCTC 1 cut(s) 941
BsrDI GCAATG 1 cut(s) 708
BsrI ACTGG 5 cut(s) 103, 533, 589, 725, 860
BssECI CCNNGG 2 cut(s) 212, 301
BssMI GATC 7 cut(s) 160, 258, 344, 450, 601, 679, 723
BssSI CACGAG 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 492
Bst2UI CCWGG 3 cut(s) 501, 642, 819
Bst4CI ACNGT 3 cut(s) 341, 913, 981
Bst6I CTCTTC 1 cut(s) 380
BstAPI GCANNNNNTGC 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 4 cut(s) 36, 197, 922, 935
BstDSI CCRYGG 2 cut(s) 212, 301
BstENI CCTNNNNNAGG 1 cut(s) 610
BstF5I GGATG 2 cut(s) 453, 763
BstFNI CGCG 1 cut(s) 414
BstKTI GATC 7 cut(s) 163, 261, 347, 453, 604, 682, 726
BstMAI GTCTC 2 cut(s) 42, 941
BstMBI GATC 7 cut(s) 160, 258, 344, 450, 601, 679, 723
BstMCI CGRYCG 1 cut(s) 912
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 3 cut(s) 501, 642, 819
BstSCI CCNGG 3 cut(s) 499, 640, 817
BstSFI CTRYAG 2 cut(s) 340, 738
BstUI CGCG 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 2 cut(s) 344, 601
BstYI RGATCY 2 cut(s) 344, 601
BsuRI GGCC 2 cut(s) 30, 293
BtgI CCRYGG 2 cut(s) 212, 301
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 2 cut(s) 453, 763
BtsI GCAGTG 1 cut(s) 781
BtsIMutI CAGTG 2 cut(s) 268, 781
BtuMI TCGCGA 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 118
CciI TCATGA 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 512, 626
CseI GACGC 1 cut(s) 707
Csp6I GTAC 3 cut(s) 190, 885, 977
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 3 cut(s) 121, 213, 398
CviJI RGCY 8 cut(s) 30, 150, 230, 293, 519, 648, 737, 787
CviKI_1 RGCY 8 cut(s) 30, 150, 230, 293, 519, 648, 737, 787
CviQI GTAC 3 cut(s) 190, 885, 977
DdeI CTNAG 4 cut(s) 36, 197, 922, 935
DpnI GATC 7 cut(s) 162, 260, 346, 452, 603, 681, 725
DpnII GATC 7 cut(s) 160, 258, 344, 450, 601, 679, 723
DraI TTTAAA 1 cut(s) 960
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Eco130I CCWWGG 1 cut(s) 212
Eco147I AGGCCT 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 789
Eco31I GGTCTC 1 cut(s) 941
Eco47I GGWCC 2 cut(s) 512, 626
Eco57I CTGAAG 2 cut(s) 404, 855
Eco88I CYCGRG 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 610
EcoRII CCWGG 3 cut(s) 499, 640, 817
EcoT14I CCWWGG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 3 cut(s) 124, 216, 401
FaqI GGGAC 1 cut(s) 115
FatI CATG 3 cut(s) 120, 212, 397
FokI GGATG 2 cut(s) 460, 770
FriOI GRGCYC 1 cut(s) 789
FspBI CTAG 1 cut(s) 827
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 2 cut(s) 30, 293
HgaI GACGC 1 cut(s) 707
Hin1II CATG 3 cut(s) 124, 216, 401
HincII GTYRAC 2 cut(s) 279, 718
HindII GTYRAC 2 cut(s) 279, 718
HindIII AAGCTT 1 cut(s) 646
HinfI GANTC 4 cut(s) 167, 779, 880, 926
HphI GGTGA 1 cut(s) 849
Hpy166II GTNNAC 4 cut(s) 279, 718, 857, 930
Hpy188I TCNGA 4 cut(s) 384, 784, 874, 938
Hpy188III TCNNGA 6 cut(s) 164, 398, 413, 454, 522, 624
Hpy8I GTNNAC 4 cut(s) 279, 718, 857, 930
HpyAV CCTTC 3 cut(s) 220, 410, 962
HpyCH4III ACNGT 3 cut(s) 341, 913, 981
HpyCH4IV ACGT 2 cut(s) 352, 610
HpyCH4V TGCA 4 cut(s) 116, 542, 674, 761
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 4 cut(s) 36, 197, 922, 935
HpySE526I ACGT 2 cut(s) 352, 610
Hsp92II CATG 3 cut(s) 124, 216, 401
Kzo9I GATC 7 cut(s) 160, 258, 344, 450, 601, 679, 723
LmnI GCTCC 1 cut(s) 502
LweI GCATC 1 cut(s) 748
MaeI CTAG 1 cut(s) 827
MaeII ACGT 2 cut(s) 352, 610
MaeIII GTNAC 1 cut(s) 168
MalI GATC 7 cut(s) 162, 260, 346, 452, 603, 681, 725
MboI GATC 7 cut(s) 160, 258, 344, 450, 601, 679, 723
MboII GAAGA 5 cut(s) 200, 268, 397, 831, 861
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 2 cut(s) 344, 601
MhlI GDGCHC 2 cut(s) 499, 789
MluCI AATT 6 cut(s) 91, 285, 317, 619, 765, 834
MlyI GAGTC 2 cut(s) 176, 935
MroXI GAANNNNTTC 2 cut(s) 420, 904
MseI TTAA 1 cut(s) 959
MspR9I CCNGG 3 cut(s) 501, 642, 819
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 3 cut(s) 501, 642, 819
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 113
NcoI CCATGG 1 cut(s) 212
NdeII GATC 7 cut(s) 160, 258, 344, 450, 601, 679, 723
NlaIII CATG 3 cut(s) 124, 216, 401
NmuCI GTSAC 1 cut(s) 168
NruI TCGCGA 1 cut(s) 414
PaeR7I CTCGAG 1 cut(s) 164
PagI TCATGA 1 cut(s) 397
PceI AGGCCT 1 cut(s) 293
PdmI GAANNNNTTC 2 cut(s) 420, 904
PfeI GAWTC 2 cut(s) 779, 880
PflMI CCANNNNNTGG 2 cut(s) 374, 521
PfoI TCCNGGA 2 cut(s) 640, 817
PleI GAGTC 2 cut(s) 175, 934
PpsI GAGTC 2 cut(s) 175, 934
Ppu21I YACGTR 1 cut(s) 611
Psp6I CCWGG 3 cut(s) 499, 640, 817
PspGI CCWGG 3 cut(s) 499, 640, 817
PspPI GGNCC 2 cut(s) 512, 626
PsuI RGATCY 2 cut(s) 344, 601
RruI TCGCGA 1 cut(s) 414
RsaI GTAC 3 cut(s) 191, 886, 978
RsaNI GTAC 3 cut(s) 190, 885, 977
SaqAI TTAA 1 cut(s) 959
Sau3AI GATC 7 cut(s) 160, 258, 344, 450, 601, 679, 723
Sau96I GGNCC 2 cut(s) 512, 626
SchI GAGTC 2 cut(s) 176, 935
ScrFI CCNGG 3 cut(s) 501, 642, 819
SduI GDGCHC 2 cut(s) 499, 789
SfaNI GCATC 1 cut(s) 748
SfcI CTRYAG 2 cut(s) 340, 738
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 2 cut(s) 512, 626
SlaI CTCGAG 1 cut(s) 164
SmiI ATTTAAAT 1 cut(s) 960
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 6 cut(s) 91, 285, 317, 619, 765, 834
SseBI AGGCCT 1 cut(s) 293
SsiI CCGC 1 cut(s) 713
SspI AATATT 1 cut(s) 904
SspMI CTAG 1 cut(s) 827
StuI AGGCCT 1 cut(s) 293
StyD4I CCNGG 3 cut(s) 499, 640, 817
StyI CCWWGG 1 cut(s) 212
SwaI ATTTAAAT 1 cut(s) 960
TaaI ACNGT 3 cut(s) 341, 913, 981
TaiI ACGT 2 cut(s) 355, 613
TaqI TCGA 2 cut(s) 165, 908
TaqII GACCGA 1 cut(s) 643
TasI AATT 6 cut(s) 91, 285, 317, 619, 765, 834
TatI WGTACW 2 cut(s) 189, 976
TfiI GAWTC 2 cut(s) 779, 880
Tru1I TTAA 1 cut(s) 959
Tru9I TTAA 1 cut(s) 959
TscAI CASTG 2 cut(s) 268, 781
TseFI GTSAC 1 cut(s) 168
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 3 cut(s) 137, 386, 944
TspRI CASTG 2 cut(s) 268, 781
Van91I CCANNNNNTGG 2 cut(s) 374, 521
VpaK11BI GGWCC 2 cut(s) 512, 626
XagI CCTNNNNNAGG 1 cut(s) 610
XapI RAATTY 4 cut(s) 91, 317, 619, 834
XhoI CTCGAG 1 cut(s) 164
XmnI GAANNNNTTC 2 cut(s) 420, 904
XspI CTAG 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.