Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003081

Physical Location & Seq

Genomic Coordinates Forward (+)

61768357 .. 61770876

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGACATGGGCTGGAATTCCAAATGTGCGATGGTTTGGCACCGAAGGAGACTACAATGTTCTTGTGATGGATTTATTGGGACGTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAAGTTCCTAATGGGATTGGGTCGTCTGGCAAATCAGATTTACATCATTGACTTCGGCCTCGCTAAGAAGTATAGAGACACATCAACCCATCAGCATATTCCTTATAGAGATAATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAAGCCGAAGCGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAACCAGATTATGGTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGATGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTACAAATGTTGAAAGACAATCAGGTAATTGTATAATCATTCATTTTCTCAATCACTGTCATATTTACGTGGAAAAGCTTTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

290

Amino Acids

33.58

Weight (kDa)

9.21

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 168	2e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 173	1.3e-07	Protein tyrosine and serine/threonine kinase
Pkinase_fungal	PF17667	49 - 147	4.3e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72710
fragaria_vesca	FvH4_6g34010 FvH4_6g34010 FvH4_6g34010
malus_domestica	MD09G1190100.v1.1 MD17G1173000.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.3G046000_v2.0.a1
pyrus_communis	pycom09g10660 pycom17g17150
rosa_chinensis	RchiOBHm_Chr2g0143801 RchiOBHm_Chr2g0143831 RchiOBHm_Chr2g0143921 RchiOBHm_Chr2g0143961 RchiOBHm_Chr2g0144121 RchiOBHm_Chr2g0144141 RchiOBHm_Chr2g0144191 RchiOBHm_Chr2g0144221 RchiOBHm_Chr2g0144271
rosa_laevigata	RLG00000020070
rosa_multiflora	Rmu_sc0002354.1_g000001 Rmu_sc0012360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101420
rosa_rugosa	Rorug02G0385600 Rorug02G0385700
rosa_samantha	Rh2AG438100 Rh2BG446500 Rh2BG448300 Rh2CG424700 Rh2DG455900 Rh2DG456800 Rh2DG457800
rosa_wichuraiana	Rw2G033290 Rw2G033320 Rw2G035780 Rw2G035830 Rw2G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	2 cut(s)	620, 767
AccII	CGCG	1 cut(s)	660
AcsI	RAATTY	3 cut(s)	15, 337, 563
AcuI	CTGAAG	1 cut(s)	650
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	3 cut(s)	464, 620, 767
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	5 cut(s)	103, 389, 472, 703, 797
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	2 cut(s)	765, 862
AluI	AGCT	2 cut(s)	765, 862
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	3 cut(s)	42, 129, 288
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	2 cut(s)	274, 537
ApoI	RAATTY	3 cut(s)	15, 337, 563
Asp700I	GAANNNNTTC	1 cut(s)	666
AspS9I	GGNCC	1 cut(s)	758
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	758
BanI	GGYRCC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	738
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	745
BccI	CCATC	3 cut(s)	24, 61, 315
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	747
BcoDI	GTCTC	3 cut(s)	42, 129, 288
BfmI	CTRYAG	1 cut(s)	586
BfrI	CTTAAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	590
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	758
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	758
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	747
BmrI	ACTGGG	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	853
BsaBI	GATNNNNATC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	458, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	727, 757
Bsc4I	CCNNNNNNNGG	3 cut(s)	464, 620, 767
Bse1I	ACTGG	2 cut(s)	349, 779
Bse8I	GATNNNNATC	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	458, 547
BseGI	GGATG	1 cut(s)	699
BseJI	GATNNNNATC	1 cut(s)	260
BseLI	CCNNNNNNNGG	3 cut(s)	464, 620, 767
BseNI	ACTGG	2 cut(s)	349, 779
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	2 cut(s)	276, 539
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	745
BsiHKCI	CYCGRG	1 cut(s)	410
BslFI	GGGAC	2 cut(s)	93, 361
BslI	CCNNNNNNNGG	3 cut(s)	464, 620, 767
BsmAI	GTCTC	3 cut(s)	42, 129, 288
BsmFI	GGGAC	2 cut(s)	93, 361
BsnI	GGCC	2 cut(s)	276, 539
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp143I	GATC	5 cut(s)	151, 406, 504, 590, 696
Bsp19I	CCATGG	1 cut(s)	458
Bsp68I	TCGCGA	1 cut(s)	660
BspANI	GGCC	2 cut(s)	276, 539
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	38
BspTI	CTTAAG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	349, 779
BssECI	CCNNGG	2 cut(s)	458, 547
BssMI	GATC	5 cut(s)	151, 406, 504, 590, 696
BssSI	CACGAG	1 cut(s)	738
BssT1I	CCWWGG	1 cut(s)	458
Bst2BI	CACGAG	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	136, 587, 842
Bst6I	CTCTTC	1 cut(s)	626
BstAFI	CTTAAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstBAI	YACGTR	1 cut(s)	853
BstC8I	GCNNGC	2 cut(s)	147, 364
BstDEI	CTNAG	2 cut(s)	282, 443
BstDSI	CCRYGG	2 cut(s)	458, 547
BstF5I	GGATG	1 cut(s)	699
BstFNI	CGCG	1 cut(s)	660
BstKTI	GATC	5 cut(s)	154, 409, 507, 593, 699
BstMAI	GTCTC	3 cut(s)	42, 129, 288
BstMBI	GATC	5 cut(s)	151, 406, 504, 590, 696
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	747
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	1 cut(s)	586
BstUI	CGCG	1 cut(s)	660
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BsuRI	GGCC	2 cut(s)	276, 539
BtgI	CCRYGG	2 cut(s)	458, 547
BtgZI	GCGATG	2 cut(s)	43, 417
BtsCI	GGATG	1 cut(s)	699
BtsIMutI	CAGTG	2 cut(s)	514, 838
BtuMI	TCGCGA	1 cut(s)	660
Cac8I	GCNNGC	2 cut(s)	147, 364
Cfr13I	GGNCC	1 cut(s)	758
Csp6I	GTAC	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	547, 582
CviAII	CATG	4 cut(s)	6, 142, 367, 459
CviJI	RGCY	7 cut(s)	11, 276, 396, 476, 539, 765, 862
CviKI_1	RGCY	7 cut(s)	11, 276, 396, 476, 539, 765, 862
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	2 cut(s)	282, 443
DpnI	GATC	5 cut(s)	153, 408, 506, 592, 698
DpnII	GATC	5 cut(s)	151, 406, 504, 590, 696
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	458
Eco147I	AGGCCT	1 cut(s)	539
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	745
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	4 cut(s)	9, 145, 370, 462
FaqI	GGGAC	2 cut(s)	93, 361
FatI	CATG	4 cut(s)	5, 141, 366, 458
FokI	GGATG	1 cut(s)	706
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	2 cut(s)	276, 539
Hin1II	CATG	4 cut(s)	9, 145, 370, 462
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	860
HinfI	GANTC	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	2 cut(s)	255, 630
Hpy188III	TCNNGA	7 cut(s)	89, 203, 410, 644, 659, 700, 768
Hpy8I	GTNNAC	1 cut(s)	525
HpyAV	CCTTC	3 cut(s)	38, 466, 656
HpyCH4III	ACNGT	3 cut(s)	136, 587, 842
HpyCH4IV	ACGT	3 cut(s)	82, 598, 852
HpyCH4V	TGCA	3 cut(s)	111, 149, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	282, 443
HpySE526I	ACGT	3 cut(s)	82, 598, 852
Hsp92II	CATG	4 cut(s)	9, 145, 370, 462
Kzo9I	GATC	5 cut(s)	151, 406, 504, 590, 696
LmnI	GCTCC	1 cut(s)	748
MaeII	ACGT	3 cut(s)	82, 598, 852
MaeIII	GTNAC	3 cut(s)	414, 644, 784
MalI	GATC	5 cut(s)	153, 408, 506, 592, 698
MboI	GATC	5 cut(s)	151, 406, 504, 590, 696
MboII	GAAGA	3 cut(s)	446, 514, 643
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	590
MhlI	GDGCHC	1 cut(s)	745
MluCI	AATT	5 cut(s)	15, 337, 531, 563, 811
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	7 cut(s)	85, 287, 440, 529, 580, 741, 786
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	2 cut(s)	129, 871
MspCI	CTTAAG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	747
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	458
NdeII	GATC	5 cut(s)	151, 406, 504, 590, 696
NlaIII	CATG	4 cut(s)	9, 145, 370, 462
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	414, 644
NruI	TCGCGA	1 cut(s)	660
PaeR7I	CTCGAG	1 cut(s)	410
PceI	AGGCCT	1 cut(s)	539
PdmI	GAANNNNTTC	1 cut(s)	666
PflFI	GACNNNGTC	1 cut(s)	84
PflMI	CCANNNNNTGG	2 cut(s)	620, 767
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	853
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	758
PsuI	RGATCY	1 cut(s)	590
PsyI	GACNNNGTC	1 cut(s)	84
RruI	TCGCGA	1 cut(s)	660
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	129, 871
Sau3AI	GATC	5 cut(s)	151, 406, 504, 590, 696
Sau96I	GGNCC	1 cut(s)	758
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	1 cut(s)	745
SetI	ASST	9 cut(s)	85, 601, 651, 667, 733, 767, 811, 855, 864
SfcI	CTRYAG	1 cut(s)	586
Sfr274I	CTCGAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	758
SlaI	CTCGAG	1 cut(s)	410
SmlI	CTYRAG	3 cut(s)	89, 128, 410
SmoI	CTYRAG	3 cut(s)	89, 128, 410
Sse9I	AATT	5 cut(s)	15, 337, 531, 563, 811
SseBI	AGGCCT	1 cut(s)	539
StuI	AGGCCT	1 cut(s)	539
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	3 cut(s)	136, 587, 842
TaiI	ACGT	3 cut(s)	85, 601, 855
TaqI	TCGA	2 cut(s)	166, 411
TasI	AATT	5 cut(s)	15, 337, 531, 563, 811
TatI	WGTACW	1 cut(s)	435
Tru1I	TTAA	2 cut(s)	129, 871
Tru9I	TTAA	2 cut(s)	129, 871
TscAI	CASTG	2 cut(s)	514, 845
TseFI	GTSAC	2 cut(s)	414, 644
Tsp45I	GTSAC	2 cut(s)	414, 644
TspDTI	ATGAA	3 cut(s)	170, 383, 815
TspRI	CASTG	2 cut(s)	514, 845
Tth111I	GACNNNGTC	1 cut(s)	84
Van91I	CCANNNNNTGG	2 cut(s)	620, 767
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	758
XapI	RAATTY	3 cut(s)	15, 337, 563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XhoI	CTCGAG	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.