Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003081

Physical Location & Seq

Genomic Coordinates Forward (+)

61828202 .. 61832163

Gene Structure 3962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51420

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAGTGCTGAAAATCTGTCTGGAATTCCAAATGTGCGATGGTTTGGCACCGAAGGAGACTACAATGTTCTTGTGATGGATTTATTGGGACCTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAAGTTCCTAATGGGATTGGGTGGTCGGGCAAATCAGATTTACATCATTGACTTCGGCCTCGCTAAGAAGTATAGAGACACATCAACCCATCAGCATATTCCTTATAGAGATAATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAAGCCGAAGGGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATTAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAACCAGATTATGCTTATCTGAAGAAATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGACGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCAGTAATTGTTGGCAGTGAATCCAAGCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCAGTTGTATCTTCAGAGCAGAATCGTACCACTTCTGGTAGAAATATTTCGACAGTAAAAAACTTAGAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTTAATAGCGACGAGAGAGTACAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

416

Amino Acids

46.53

Weight (kDa)

9.59

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	18 - 171	7.2e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 209	2.1e-07	Protein tyrosine and serine/threonine kinase
Pkinase_fungal	PF17667	54 - 150	1.1e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72710
fragaria_vesca	FvH4_6g34010 FvH4_6g34010 FvH4_6g34010
malus_domestica	MD09G1190100.v1.1 MD17G1173000.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.3G046000_v2.0.a1
pyrus_communis	pycom09g10660 pycom17g17150
rosa_chinensis	RchiOBHm_Chr2g0143801 RchiOBHm_Chr2g0143831 RchiOBHm_Chr2g0143921 RchiOBHm_Chr2g0143961 RchiOBHm_Chr2g0144121 RchiOBHm_Chr2g0144141 RchiOBHm_Chr2g0144191 RchiOBHm_Chr2g0144221 RchiOBHm_Chr2g0144271
rosa_laevigata	RLG00000020070
rosa_multiflora	Rmu_sc0002354.1_g000001 Rmu_sc0012360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101420
rosa_rugosa	Rorug02G0385600 Rorug02G0385700
rosa_samantha	Rh2AG438100 Rh2BG446500 Rh2BG448300 Rh2CG424700 Rh2DG455900 Rh2DG456800 Rh2DG457800
rosa_wichuraiana	Rw2G033290 Rw2G033320 Rw2G035780 Rw2G035830 Rw2G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	776
AccII	CGCG	1 cut(s)	669
AciI	CCGC	1 cut(s)	982
AclWI	GGATC	3 cut(s)	851, 929, 1000
AcsI	RAATTY	5 cut(s)	24, 346, 572, 874, 1098
AcuI	CTGAAG	2 cut(s)	659, 1119
AfaI	GTAC	3 cut(s)	446, 1150, 1242
AfiI	CCNNNNNNNGG	3 cut(s)	473, 776, 867
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	112, 398, 481, 712, 806
AjnI	CCWGG	3 cut(s)	754, 895, 1081
AluBI	AGCT	2 cut(s)	774, 903
AluI	AGCT	2 cut(s)	774, 903
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	4 cut(s)	51, 138, 297, 1205
AlwI	GGATC	3 cut(s)	851, 929, 1000
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	283, 546
ApoI	RAATTY	5 cut(s)	24, 346, 572, 874, 1098
Asp700I	GAANNNNTTC	2 cut(s)	675, 1168
AspLEI	GCGC	1 cut(s)	1059
AspS9I	GGNCC	3 cut(s)	89, 767, 881
AsuHPI	GGTGA	1 cut(s)	1113
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	3 cut(s)	89, 767, 881
BanI	GGYRCC	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	1087, 1119
BauI	CACGAG	1 cut(s)	747
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	754
BccI	CCATC	4 cut(s)	33, 70, 324, 946
BceAI	ACGGC	1 cut(s)	540
BciT130I	CCWGG	3 cut(s)	756, 897, 1083
BcoDI	GTCTC	4 cut(s)	51, 138, 297, 1205
BfaI	CTAG	4 cut(s)	93, 972, 1017, 1091
BfmI	CTRYAG	2 cut(s)	595, 1008
BfoI	RGCGCY	1 cut(s)	1060
BfrI	CTTAAG	1 cut(s)	137
BglII	AGATCT	1 cut(s)	599
Bme1390I	CCNGG	3 cut(s)	756, 897, 1083
Bme18I	GGWCC	3 cut(s)	89, 767, 881
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	3 cut(s)	89, 767, 881
BmiI	GGNNCC	2 cut(s)	49, 90
BmrFI	CCNGG	3 cut(s)	756, 897, 1083
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	1018
BmuI	ACTGGG	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	455
BpmI	CTGGAG	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	1205
BsaJI	CCNNGG	2 cut(s)	467, 556
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	3 cut(s)	473, 776, 867
Bse1I	ACTGG	5 cut(s)	358, 788, 844, 994, 1124
Bse3DI	GCAATG	1 cut(s)	963
Bse8I	GATNNNNATC	1 cut(s)	269
BseBI	CCWGG	3 cut(s)	756, 897, 1083
BseDI	CCNNGG	2 cut(s)	467, 556
BseGI	GGATG	2 cut(s)	418, 1033
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	3 cut(s)	473, 776, 867
BseMI	GCAATG	1 cut(s)	963
BseMII	CTCAG	1 cut(s)	1213
BseNI	ACTGG	5 cut(s)	358, 788, 844, 994, 1124
Bsh1236I	CGCG	1 cut(s)	669
BshFI	GGCC	2 cut(s)	285, 548
BshNI	GGYRCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	754
BsiHKCI	CYCGRG	1 cut(s)	419
BslFI	GGGAC	2 cut(s)	102, 370
BslI	CCNNNNNNNGG	3 cut(s)	473, 776, 867
BsmAI	GTCTC	4 cut(s)	51, 138, 297, 1205
BsmFI	GGGAC	2 cut(s)	102, 370
BsnI	GGCC	2 cut(s)	285, 548
Bso31I	GGTCTC	1 cut(s)	1205
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp143I	GATC	7 cut(s)	160, 415, 599, 705, 856, 934, 992
Bsp19I	CCATGG	1 cut(s)	467
Bsp68I	TCGCGA	1 cut(s)	669
BspACI	CCGC	1 cut(s)	982
BspANI	GGCC	2 cut(s)	285, 548
BspCNI	CTCAG	1 cut(s)	1212
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	49, 90
BspPI	GGATC	3 cut(s)	851, 929, 1000
BspT107I	GGYRCC	1 cut(s)	47
BspTI	CTTAAG	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	1205
BsrDI	GCAATG	1 cut(s)	963
BsrI	ACTGG	5 cut(s)	358, 788, 844, 994, 1124
BssECI	CCNNGG	2 cut(s)	467, 556
BssMI	GATC	7 cut(s)	160, 415, 599, 705, 856, 934, 992
BssSI	CACGAG	1 cut(s)	747
BssT1I	CCWWGG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	747
Bst2UI	CCWGG	3 cut(s)	756, 897, 1083
Bst4CI	ACNGT	4 cut(s)	145, 596, 1177, 1245
BstAFI	CTTAAG	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	866
BstC8I	GCNNGC	2 cut(s)	156, 373
BstDEI	CTNAG	4 cut(s)	291, 452, 1186, 1199
BstDSI	CCRYGG	2 cut(s)	467, 556
BstENI	CCTNNNNNAGG	1 cut(s)	865
BstF5I	GGATG	2 cut(s)	418, 1033
BstFNI	CGCG	1 cut(s)	669
BstH2I	RGCGCY	1 cut(s)	1060
BstHHI	GCGC	1 cut(s)	1059
BstKTI	GATC	7 cut(s)	163, 418, 602, 708, 859, 937, 995
BstMAI	GTCTC	4 cut(s)	51, 138, 297, 1205
BstMBI	GATC	7 cut(s)	160, 415, 599, 705, 856, 934, 992
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	3 cut(s)	756, 897, 1083
BstSCI	CCNGG	3 cut(s)	754, 895, 1081
BstSFI	CTRYAG	2 cut(s)	595, 1008
BstUI	CGCG	1 cut(s)	669
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	2 cut(s)	599, 856
BstYI	RGATCY	2 cut(s)	599, 856
BsuRI	GGCC	2 cut(s)	285, 548
BtgI	CCRYGG	2 cut(s)	467, 556
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	418, 1033
BtsI	GCAGTG	1 cut(s)	1051
BtsIMutI	CAGTG	1 cut(s)	1051
BtuMI	TCGCGA	1 cut(s)	669
Cac8I	GCNNGC	2 cut(s)	156, 373
CfoI	GCGC	1 cut(s)	1059
Cfr13I	GGNCC	3 cut(s)	89, 767, 881
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	3 cut(s)	445, 1149, 1241
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	3 cut(s)	151, 376, 468
CviJI	RGCY	7 cut(s)	285, 405, 485, 548, 774, 903, 1007
CviKI_1	RGCY	7 cut(s)	285, 405, 485, 548, 774, 903, 1007
CviQI	GTAC	3 cut(s)	445, 1149, 1241
DdeI	CTNAG	4 cut(s)	291, 452, 1186, 1199
DpnI	GATC	7 cut(s)	162, 417, 601, 707, 858, 936, 994
DpnII	GATC	7 cut(s)	160, 415, 599, 705, 856, 934, 992
Eco130I	CCWWGG	1 cut(s)	467
Eco147I	AGGCCT	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	1205
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	3 cut(s)	89, 767, 881
Eco57I	CTGAAG	2 cut(s)	659, 1119
Eco88I	CYCGRG	1 cut(s)	419
EcoNI	CCTNNNNNAGG	1 cut(s)	865
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	3 cut(s)	754, 895, 1081
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	3 cut(s)	154, 379, 471
FaqI	GGGAC	2 cut(s)	102, 370
FatI	CATG	3 cut(s)	150, 375, 467
FokI	GGATG	2 cut(s)	425, 1040
FspBI	CTAG	4 cut(s)	93, 972, 1017, 1091
GlaI	GCGC	1 cut(s)	1058
GsuI	CTGGAG	1 cut(s)	771
HaeII	RGCGCY	1 cut(s)	1060
HaeIII	GGCC	2 cut(s)	285, 548
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	1 cut(s)	1059
Hin1II	CATG	3 cut(s)	154, 379, 471
Hin6I	GCGC	1 cut(s)	1057
HinP1I	GCGC	1 cut(s)	1057
HincII	GTYRAC	2 cut(s)	534, 987
HindII	GTYRAC	2 cut(s)	534, 987
HindIII	AAGCTT	1 cut(s)	901
HinfI	GANTC	4 cut(s)	422, 1049, 1144, 1190
HphI	GGTGA	1 cut(s)	1113
Hpy166II	GTNNAC	4 cut(s)	534, 987, 1121, 1194
Hpy188I	TCNGA	4 cut(s)	264, 639, 1138, 1202
Hpy8I	GTNNAC	4 cut(s)	534, 987, 1121, 1194
Hpy99I	CGWCG	1 cut(s)	1235
HpyAV	CCTTC	5 cut(s)	47, 402, 475, 665, 1226
HpyCH4III	ACNGT	4 cut(s)	145, 596, 1177, 1245
HpyCH4IV	ACGT	2 cut(s)	607, 865
HpyCH4V	TGCA	6 cut(s)	120, 158, 371, 797, 929, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	4 cut(s)	291, 452, 1186, 1199
HpySE526I	ACGT	2 cut(s)	607, 865
Hsp92II	CATG	3 cut(s)	154, 379, 471
HspAI	GCGC	1 cut(s)	1057
Kzo9I	GATC	7 cut(s)	160, 415, 599, 705, 856, 934, 992
LmnI	GCTCC	1 cut(s)	757
LweI	GCATC	1 cut(s)	1018
MaeI	CTAG	4 cut(s)	93, 972, 1017, 1091
MaeII	ACGT	2 cut(s)	607, 865
MaeIII	GTNAC	2 cut(s)	423, 653
MalI	GATC	7 cut(s)	162, 417, 601, 707, 858, 936, 994
MboI	GATC	7 cut(s)	160, 415, 599, 705, 856, 934, 992
MboII	GAAGA	5 cut(s)	455, 523, 652, 1095, 1125
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	2 cut(s)	599, 856
MhlI	GDGCHC	1 cut(s)	754
MluCI	AATT	8 cut(s)	24, 346, 540, 572, 644, 874, 1035, 1098
MlyI	GAGTC	2 cut(s)	431, 1199
MroXI	GAANNNNTTC	2 cut(s)	675, 1168
MseI	TTAA	2 cut(s)	138, 1224
MspCI	CTTAAG	1 cut(s)	137
MspR9I	CCNGG	3 cut(s)	756, 897, 1083
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	3 cut(s)	756, 897, 1083
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	467
NdeII	GATC	7 cut(s)	160, 415, 599, 705, 856, 934, 992
NlaIII	CATG	3 cut(s)	154, 379, 471
NlaIV	GGNNCC	2 cut(s)	49, 90
NmuCI	GTSAC	2 cut(s)	423, 653
NruI	TCGCGA	1 cut(s)	669
PaeR7I	CTCGAG	1 cut(s)	419
PceI	AGGCCT	1 cut(s)	548
PdmI	GAANNNNTTC	2 cut(s)	675, 1168
PfeI	GAWTC	2 cut(s)	1049, 1144
PflFI	GACNNNGTC	1 cut(s)	93
PflMI	CCANNNNNTGG	1 cut(s)	776
PfoI	TCCNGGA	2 cut(s)	895, 1081
PleI	GAGTC	2 cut(s)	430, 1198
PpsI	GAGTC	2 cut(s)	430, 1198
Ppu21I	YACGTR	1 cut(s)	866
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	3 cut(s)	754, 895, 1081
PspGI	CCWGG	3 cut(s)	754, 895, 1081
PspN4I	GGNNCC	2 cut(s)	49, 90
PspPI	GGNCC	3 cut(s)	89, 767, 881
PspPPI	RGGWCCY	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	599, 856
PsyI	GACNNNGTC	1 cut(s)	93
RruI	TCGCGA	1 cut(s)	669
RsaI	GTAC	3 cut(s)	446, 1150, 1242
RsaNI	GTAC	3 cut(s)	445, 1149, 1241
SaqAI	TTAA	2 cut(s)	138, 1224
Sau3AI	GATC	7 cut(s)	160, 415, 599, 705, 856, 934, 992
Sau96I	GGNCC	3 cut(s)	89, 767, 881
SchI	GAGTC	2 cut(s)	431, 1199
ScrFI	CCNGG	3 cut(s)	756, 897, 1083
SduI	GDGCHC	1 cut(s)	754
SfaNI	GCATC	1 cut(s)	1018
SfcI	CTRYAG	2 cut(s)	595, 1008
Sfr274I	CTCGAG	1 cut(s)	419
SinI	GGWCC	3 cut(s)	89, 767, 881
SlaI	CTCGAG	1 cut(s)	419
SmlI	CTYRAG	3 cut(s)	98, 137, 419
SmoI	CTYRAG	3 cut(s)	98, 137, 419
Sse9I	AATT	8 cut(s)	24, 346, 540, 572, 644, 874, 1035, 1098
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	1 cut(s)	982
SspI	AATATT	1 cut(s)	1168
SspMI	CTAG	4 cut(s)	93, 972, 1017, 1091
StuI	AGGCCT	1 cut(s)	548
StyD4I	CCNGG	3 cut(s)	754, 895, 1081
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	4 cut(s)	145, 596, 1177, 1245
TaiI	ACGT	2 cut(s)	610, 868
TaqI	TCGA	3 cut(s)	175, 420, 1172
TaqII	GACCGA	1 cut(s)	898
TasI	AATT	8 cut(s)	24, 346, 540, 572, 644, 874, 1035, 1098
TatI	WGTACW	2 cut(s)	444, 1240
TfiI	GAWTC	2 cut(s)	1049, 1144
Tru1I	TTAA	2 cut(s)	138, 1224
Tru9I	TTAA	2 cut(s)	138, 1224
TscAI	CASTG	1 cut(s)	1051
TseFI	GTSAC	2 cut(s)	423, 653
Tsp45I	GTSAC	2 cut(s)	423, 653
TspDTI	ATGAA	3 cut(s)	179, 392, 1208
TspRI	CASTG	1 cut(s)	1051
Tth111I	GACNNNGTC	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	776
Vha464I	CTTAAG	1 cut(s)	137
VpaK11BI	GGWCC	3 cut(s)	89, 767, 881
XagI	CCTNNNNNAGG	1 cut(s)	865
XapI	RAATTY	5 cut(s)	24, 346, 572, 874, 1098
XcmI	CCANNNNNNNNNTGG	1 cut(s)	36
XhoI	CTCGAG	1 cut(s)	419
XmnI	GAANNNNTTC	2 cut(s)	675, 1168
XspI	CTAG	4 cut(s)	93, 972, 1017, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.