Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003081

Physical Location & Seq

Genomic Coordinates Forward (+)

49208064 .. 49214185

Gene Structure 6122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0385700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCAATTATACCTTGTGGAAGTACAACGGTTGCTCAATGGGGCATTCGTCCTCAGCCTATGCTAAGATCCTATGCCATGAACAAGATACGTACATCCCAGTGTTGTGTTTCCAGCCAAATAGGCTCTTTGGGGGCACAAACTTCAAGCATCTTCTCTCGGGATTCCTTGAATGCTCTATTCTGTGCAGGCTCTCACACTTCAAATCGCATTAGGGGAGCAAGATTCGTAGTTAGAGCAGACTCTGACTATTATTCTGTTCTTGGAGTGTCAAGAAATGCGACTAAAGCAGAAATTAAAAGCGCTTACCGGAAGCTTGCAAGAAGTTATCATCCAGATGTGAACAAAGAAGCAGGGGCAGAAACAAAATTCAAGGAAATTAGTAATGCATATGAGGTCTTGTCTGATGATGAAAAACGATCACTATATGACAAATATGGAGAGGCTGGAGTTAAAGGTGCTGGTATGGGTCCAGGGGATTTCAGCAATCCATTTGACCTGTTTGAGTCACTGTTTGAGGGCATGGGAGGTATGGGGTCCAGAGGTGGTGCTGGTTCTAGGAATAGAGCGGTTGATGGCCAAGACGAGTATTATAGTCTTGTCTTGAACTTCAAAGAAGCAGTTTTTGGTGTTGAAAAAGAGATTGAAATAAGTCGATTGGAGACCTGTGGAACTTGCAACGGTTCAGGTGCTAAAGCAGGAACCAAGCCCTCCAGATGCAGCACATGTGGTGGGCAAGGTCAGGTTGTTCAATCAGCAAGGACTCCTTTGGGTGTCTTCCAGCAAGTAATGACATGCTCTTCCTGTGGCGGAACTGGGGAAATATCCACCCCCTGCAACACTTGCTCTGGGGATGGTCGTGTGAGGAGGACAAAGCGAATCAGTCTGAAAGTTCCAGCTGGTGTGGATGTAGGCAGCCGTTTAAGAGTTCGAAATGAAGGCAATGCTGGAAAGCGAGGCGGGTCTCCGGGTGACCTATTTGTTATTATAGAAGTTATCCCAGACCCTGTCCTCAAACGTGATGATACCAACATTATGTACTCCTGCAAGGTGTCCTATATTGATGCAATTTTGGGGACTGCAATTAAGGTTCCAACAGTTGATGGCATGGTTGATTTGAAGATTCCAGCAGGGACTCAACCAAACACGACCCTTGTGATGGCAAAGAAAGGTGTTCCCCTCTTAAACAAAAGCAACATGAGAGGTGATCAGCTGGTGCGAGTGCAGGTTGAAATCCCGAAGAGATTAAGCAGTGATGAAAAGAAGCTCATCGAGGAACTTGCGAATCTGAGCAAGGGAAAGGCTGCAAGCAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

439

Amino Acids

47.04

Weight (kDa)

9.32

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	83 - 144	1.7e-27	DnaJ domain
DnaJ_C	PF01556	198 - 413	2.2e-44	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	223 - 286	1.3e-14	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72710
fragaria_vesca	FvH4_6g34010 FvH4_6g34010 FvH4_6g34010
malus_domestica	MD09G1190100.v1.1 MD17G1173000.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.3G046000_v2.0.a1
pyrus_communis	pycom09g10660 pycom17g17150
rosa_chinensis	RchiOBHm_Chr2g0143801 RchiOBHm_Chr2g0143831 RchiOBHm_Chr2g0143921 RchiOBHm_Chr2g0143961 RchiOBHm_Chr2g0144121 RchiOBHm_Chr2g0144141 RchiOBHm_Chr2g0144191 RchiOBHm_Chr2g0144221 RchiOBHm_Chr2g0144271
rosa_laevigata	RLG00000020070
rosa_multiflora	Rmu_sc0002354.1_g000001 Rmu_sc0012360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101420
rosa_rugosa	Rorug02G0385600 Rorug02G0385700
rosa_samantha	Rh2AG438100 Rh2BG446500 Rh2BG448300 Rh2CG424700 Rh2DG455900 Rh2DG456800 Rh2DG457800
rosa_wichuraiana	Rw2G033290 Rw2G033320 Rw2G035780 Rw2G035830 Rw2G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1216
AccBSI	CCGCTC	1 cut(s)	569
AciI	CCGC	3 cut(s)	569, 810, 960
AclWI	GGATC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	368
AfaI	GTAC	3 cut(s)	25, 94, 1040
AfeI	AGCGCT	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	1159
AflIII	ACRYGT	1 cut(s)	725
AjnI	CCWGG	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	2 cut(s)	609, 641
AluBI	AGCT	4 cut(s)	316, 899, 1213, 1267
AluI	AGCT	4 cut(s)	316, 899, 1213, 1267
Alw26I	GTCTC	2 cut(s)	656, 969
AlwI	GGATC	1 cut(s)	63
AlwNI	CAGNNNCTG	2 cut(s)	245, 1007
Ama87I	CYCGRG	1 cut(s)	159
Aor51HI	AGCGCT	1 cut(s)	304
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	3 cut(s)	720, 915, 1304
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	470, 537
AsuC2I	CCSGG	1 cut(s)	969
AsuHPI	GGTGA	2 cut(s)	983, 1217
AsuII	TTCGAA	1 cut(s)	931
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	2 cut(s)	470, 537
BaeGI	GKGCMC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	769
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	732, 927, 1291
BccI	CCATC	4 cut(s)	569, 848, 1097, 1153
BceAI	ACGGC	1 cut(s)	903
BcgI	CGANNNNNNTGC	2 cut(s)	1262, 1296
BciT130I	CCWGG	1 cut(s)	474
BclI	TGATCA	1 cut(s)	1207
BcnI	CCSGG	1 cut(s)	969
BcoDI	GTCTC	2 cut(s)	656, 969
BfaI	CTAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	1216
BglI	GCCNNNNNGGC	1 cut(s)	123
BisI	GCNGC	3 cut(s)	721, 916, 1305
BlsI	GCNGC	3 cut(s)	722, 917, 1306
Bme1390I	CCNGG	2 cut(s)	474, 969
Bme18I	GGWCC	2 cut(s)	470, 537
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	470, 537
BmiI	GGNNCC	4 cut(s)	471, 538, 703, 1092
BmrFI	CCNGG	2 cut(s)	474, 969
BmrI	ACTGGG	2 cut(s)	94, 825
BmsI	GCATC	3 cut(s)	159, 707, 1054
BmuI	ACTGGG	2 cut(s)	94, 825
BpiI	GAAGAC	1 cut(s)	769
BpmI	CTGGAG	2 cut(s)	468, 697
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	931
BpuMI	CCSGG	1 cut(s)	969
BsaAI	YACGTR	1 cut(s)	92
BsaI	GGTCTC	2 cut(s)	656, 969
BsaJI	CCNNGG	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	1159
Bse1I	ACTGG	2 cut(s)	100, 820
Bse3DI	GCAATG	1 cut(s)	949
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	4 cut(s)	95, 331, 859, 913
BseLI	CCNNNNNNNGG	1 cut(s)	1159
BseMI	GCAATG	1 cut(s)	949
BseMII	CTCAG	2 cut(s)	68, 1280
BseNI	ACTGG	2 cut(s)	100, 820
BseRI	GAGGAG	1 cut(s)	880
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	732, 927, 1291
BsgI	GTGCAG	2 cut(s)	207, 1244
BshFI	GGCC	1 cut(s)	579
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	310, 968
BslFI	GGGAC	2 cut(s)	1090, 1147
BslI	CCNNNNNNNGG	1 cut(s)	1159
BsmAI	GTCTC	2 cut(s)	656, 969
BsmFI	GGGAC	2 cut(s)	1090, 1147
BsmI	GAATGC	2 cut(s)	45, 178
BsnI	GGCC	1 cut(s)	579
Bso31I	GGTCTC	2 cut(s)	656, 969
BsoBI	CYCGRG	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	931
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	68, 419, 1207
BspACI	CCGC	3 cut(s)	569, 810, 960
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	2 cut(s)	67, 1281
BspLI	GGNNCC	4 cut(s)	471, 538, 703, 1092
BspMI	ACCTGC	1 cut(s)	1216
BspPI	GGATC	1 cut(s)	63
BspQI	GCTCTTC	1 cut(s)	805
BspT104I	TTCGAA	1 cut(s)	931
BspTNI	GGTCTC	2 cut(s)	656, 969
BsrBI	CCGCTC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	949
BsrI	ACTGG	2 cut(s)	100, 820
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	3 cut(s)	68, 419, 1207
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	4 cut(s)	31, 513, 683, 1099
Bst6I	CTCTTC	2 cut(s)	805, 1235
BstAPI	GCANNNNNTGC	1 cut(s)	843
BstBAI	YACGTR	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	931
BstC8I	GCNNGC	3 cut(s)	190, 318, 1309
BstDEI	CTNAG	3 cut(s)	54, 65, 1289
BstEII	GGTNACC	1 cut(s)	971
BstF5I	GGATG	4 cut(s)	95, 331, 859, 913
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	3 cut(s)	71, 422, 1210
BstMAI	GTCTC	2 cut(s)	656, 969
BstMBI	GATC	3 cut(s)	68, 419, 1207
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 287, 843
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	2 cut(s)	729, 798
BstPI	GGTNACC	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	472, 967
BstSLI	GKGCMC	1 cut(s)	139
BstSNI	TACGTA	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	732, 927, 1291
BstV2I	GAAGAC	1 cut(s)	769
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	579
BtsCI	GGATG	4 cut(s)	95, 331, 859, 913
BtsI	GCAGTG	1 cut(s)	1258
BtsIMutI	CAGTG	3 cut(s)	107, 509, 1258
BveI	ACCTGC	1 cut(s)	1216
Cac8I	GCNNGC	3 cut(s)	190, 318, 1309
CaiI	CAGNNNCTG	2 cut(s)	245, 1007
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	470, 537
Csp6I	GTAC	3 cut(s)	24, 93, 1039
CviAII	CATG	6 cut(s)	79, 523, 726, 795, 1108, 1198
CviQI	GTAC	3 cut(s)	24, 93, 1039
DdeI	CTNAG	3 cut(s)	54, 65, 1289
DpnI	GATC	3 cut(s)	70, 421, 1209
DpnII	GATC	3 cut(s)	68, 419, 1207
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	805, 1235
EarI	CTCTTC	2 cut(s)	805, 1235
EciI	GGCGGA	1 cut(s)	825
Eco105I	TACGTA	1 cut(s)	92
Eco31I	GGTCTC	2 cut(s)	656, 969
Eco47I	GGWCC	2 cut(s)	470, 537
Eco47III	AGCGCT	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	971
EcoO65I	GGTNACC	1 cut(s)	971
EcoRII	CCWGG	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	391
FaeI	CATG	6 cut(s)	82, 526, 729, 798, 1111, 1201
FalI	AAGNNNNNCTT	2 cut(s)	751, 783
FaqI	GGGAC	2 cut(s)	1090, 1147
FatI	CATG	6 cut(s)	78, 522, 725, 794, 1107, 1197
FauI	CCCGC	1 cut(s)	953
FauNDI	CATATG	1 cut(s)	391
FbaI	TGATCA	1 cut(s)	1207
Fnu4HI	GCNGC	3 cut(s)	721, 916, 1305
FokI	GGATG	4 cut(s)	82, 318, 866, 920
Fsp4HI	GCNGC	3 cut(s)	721, 916, 1305
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	3 cut(s)	721, 916, 1305
GsuI	CTGGAG	2 cut(s)	468, 697
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	579
HapII	CCGG	2 cut(s)	310, 968
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	6 cut(s)	82, 526, 729, 798, 1111, 1201
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	9 cut(s)	164, 225, 242, 506, 763, 879, 1123, 1135, 1285
HpaII	CCGG	2 cut(s)	310, 968
HphI	GGTGA	2 cut(s)	983, 1217
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	4 cut(s)	247, 406, 888, 1290
Hpy188III	TCNNGA	7 cut(s)	161, 273, 335, 540, 604, 714, 1237
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	932
HpyCH4III	ACNGT	4 cut(s)	31, 513, 683, 1099
HpyCH4IV	ACGT	2 cut(s)	91, 1018
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 287, 843
HpyF3I	CTNAG	3 cut(s)	54, 65, 1289
HpySE526I	ACGT	2 cut(s)	91, 1018
Hsp92II	CATG	6 cut(s)	82, 526, 729, 798, 1111, 1201
HspAI	GCGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	1207
Kzo9I	GATC	3 cut(s)	68, 419, 1207
LguI	GCTCTTC	1 cut(s)	805
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	3 cut(s)	732, 927, 1291
LweI	GCATC	3 cut(s)	159, 707, 1054
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	2 cut(s)	91, 1018
MaeIII	GTNAC	2 cut(s)	507, 971
MalI	GATC	3 cut(s)	70, 421, 1209
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	3 cut(s)	68, 419, 1207
MboII	GAAGA	5 cut(s)	145, 769, 792, 1132, 1252
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	6 cut(s)	6, 294, 368, 378, 1068, 1083
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	4 cut(s)	236, 515, 757, 1129
MmeI	TCCRAC	1 cut(s)	1118
Mox20I	TGGCCA	1 cut(s)	579
Mph1103I	ATGCAT	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	6 cut(s)	297, 453, 923, 1086, 1184, 1247
MslI	CAYNNNNRTG	2 cut(s)	100, 336
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	2 cut(s)	899, 1213
MspI	CCGG	2 cut(s)	310, 968
MspR9I	CCNGG	2 cut(s)	474, 969
Mva1269I	GAATGC	2 cut(s)	45, 178
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	123, 287, 843
NciI	CCSGG	1 cut(s)	969
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	3 cut(s)	68, 419, 1207
NlaIII	CATG	6 cut(s)	82, 526, 729, 798, 1111, 1201
NlaIV	GGNNCC	4 cut(s)	471, 538, 703, 1092
NmuCI	GTSAC	2 cut(s)	507, 971
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	2 cut(s)	729, 798
NspV	TTCGAA	1 cut(s)	931
PciI	ACATGT	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	805
PctI	GAATGC	2 cut(s)	45, 178
PfeI	GAWTC	5 cut(s)	164, 225, 879, 1123, 1285
PflFI	GACNNNGTC	1 cut(s)	1007
PkrI	GCNGC	3 cut(s)	722, 917, 1306
PleI	GAGTC	4 cut(s)	236, 514, 757, 1129
PpsI	GAGTC	4 cut(s)	236, 514, 757, 1129
Ppu21I	YACGTR	1 cut(s)	92
PscI	ACATGT	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	472
PspEI	GGTNACC	1 cut(s)	971
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	4 cut(s)	471, 538, 703, 1092
PspPI	GGNCC	2 cut(s)	470, 537
PstNI	CAGNNNCTG	2 cut(s)	245, 1007
PsuI	RGATCY	1 cut(s)	68
PsyI	GACNNNGTC	1 cut(s)	1007
PvuII	CAGCTG	2 cut(s)	899, 1213
RsaI	GTAC	3 cut(s)	25, 94, 1040
RsaNI	GTAC	3 cut(s)	24, 93, 1039
RseI	CAYNNNNRTG	2 cut(s)	100, 336
SapI	GCTCTTC	1 cut(s)	805
SaqAI	TTAA	6 cut(s)	297, 453, 923, 1086, 1184, 1247
SatI	GCNGC	3 cut(s)	721, 916, 1305
Sau3AI	GATC	3 cut(s)	68, 419, 1207
Sau96I	GGNCC	2 cut(s)	470, 537
SchI	GAGTC	4 cut(s)	236, 515, 757, 1129
ScrFI	CCNGG	2 cut(s)	474, 969
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	3 cut(s)	159, 707, 1054
SfuI	TTCGAA	1 cut(s)	931
SinI	GGWCC	2 cut(s)	470, 537
SmiMI	CAYNNNNRTG	2 cut(s)	100, 336
SnaBI	TACGTA	1 cut(s)	92
Sse9I	AATT	6 cut(s)	6, 294, 368, 378, 1068, 1083
SsiI	CCGC	3 cut(s)	569, 810, 960
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	2 cut(s)	472, 967
TaaI	ACNGT	4 cut(s)	31, 513, 683, 1099
TaiI	ACGT	2 cut(s)	94, 1021
TaqI	TCGA	3 cut(s)	655, 931, 1272
TasI	AATT	6 cut(s)	6, 294, 368, 378, 1068, 1083
TatI	WGTACW	2 cut(s)	23, 1038
TfiI	GAWTC	5 cut(s)	164, 225, 879, 1123, 1285
Tru1I	TTAA	6 cut(s)	297, 453, 923, 1086, 1184, 1247
Tru9I	TTAA	6 cut(s)	297, 453, 923, 1086, 1184, 1247
TscAI	CASTG	3 cut(s)	107, 516, 1258
TseFI	GTSAC	2 cut(s)	507, 971
TseI	GCWGC	3 cut(s)	720, 915, 1304
Tsp45I	GTSAC	2 cut(s)	507, 971
TspDTI	ATGAA	4 cut(s)	95, 426, 951, 1272
TspRI	CASTG	3 cut(s)	107, 516, 1258
Tth111I	GACNNNGTC	1 cut(s)	1007
VpaK11BI	GGWCC	2 cut(s)	470, 537
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	2 cut(s)	729, 798
XspI	CTAG	1 cut(s)	558
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.