Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003081

Physical Location & Seq

Genomic Coordinates Forward (+)

59321535 .. 59325254

Gene Structure 3720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGAACAGAGTCCACAAACAACGAAATATTACATCCACATATGGTGGCATATCATCATCATCAAGTACATACTGCTACGTAATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAATTTCCTAATGGGATTGGGTCGTCGGGCAAATCAGATTTACATCATTGACTTCGGCCTTGCTAAGAAGTATAGAGACACATCAACCCATCAGCATATTCCTTATAGAGATAATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAAGCCGAAGGGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACTTTTTGATGATAAACCAGATTATGCTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGGTTTCAGTTTGATTATGTCTTTGATTGGACGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGACGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTTGGGATGCAGTAATTGTTGGCAGTGAATCCGAGCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCAGTTGTATCTTCAGAGCAGAATCGTACCACTTCTGAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTTAATAGCGACGAGAGAGTACAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

381

Amino Acids

42.78

Weight (kDa)

9.63

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	28 - 145	3.5e-15	Protein kinase domain
Pkinase_fungal	PF17667	36 - 122	2.6e-08	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72710
fragaria_vesca	FvH4_6g34010 FvH4_6g34010 FvH4_6g34010
malus_domestica	MD09G1190100.v1.1 MD17G1173000.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.3G046000_v2.0.a1
pyrus_communis	pycom09g10660 pycom17g17150
rosa_chinensis	RchiOBHm_Chr2g0143801 RchiOBHm_Chr2g0143831 RchiOBHm_Chr2g0143921 RchiOBHm_Chr2g0143961 RchiOBHm_Chr2g0144121 RchiOBHm_Chr2g0144141 RchiOBHm_Chr2g0144191 RchiOBHm_Chr2g0144221 RchiOBHm_Chr2g0144271
rosa_laevigata	RLG00000020070
rosa_multiflora	Rmu_sc0002354.1_g000001 Rmu_sc0012360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101420
rosa_rugosa	Rorug02G0385600 Rorug02G0385700
rosa_samantha	Rh2AG438100 Rh2BG446500 Rh2BG448300 Rh2CG424700 Rh2DG455900 Rh2DG456800 Rh2DG457800
rosa_wichuraiana	Rw2G033290 Rw2G033320 Rw2G035780 Rw2G035830 Rw2G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	695
AccII	CGCG	1 cut(s)	588
AciI	CCGC	2 cut(s)	388, 901
AclWI	GGATC	3 cut(s)	770, 848, 919
AcsI	RAATTY	4 cut(s)	262, 491, 793, 1023
AcuI	CTGAAG	2 cut(s)	578, 1044
AfaI	GTAC	4 cut(s)	70, 362, 1075, 1137
AfiI	CCNNNNNNNGG	2 cut(s)	695, 786
AgsI	TTSAA	4 cut(s)	314, 400, 631, 725
AjnI	CCWGG	3 cut(s)	673, 814, 1006
AluBI	AGCT	2 cut(s)	693, 822
AluI	AGCT	2 cut(s)	693, 822
Alw21I	GWGCWC	1 cut(s)	673
Alw26I	GTCTC	2 cut(s)	213, 1100
AlwI	GGATC	3 cut(s)	770, 848, 919
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	199, 465
ApoI	RAATTY	4 cut(s)	262, 491, 793, 1023
Asp700I	GAANNNNTTC	1 cut(s)	594
AspS9I	GGNCC	2 cut(s)	686, 800
AsuHPI	GGTGA	1 cut(s)	1038
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	686, 800
BanII	GRGCYC	1 cut(s)	978
BarI	GAAGNNNNNNTAC	2 cut(s)	1012, 1044
BauI	CACGAG	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	673
BccI	CCATC	2 cut(s)	240, 865
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	3 cut(s)	675, 816, 1008
BcoDI	GTCTC	2 cut(s)	213, 1100
BfaI	CTAG	3 cut(s)	891, 936, 1016
BfmI	CTRYAG	2 cut(s)	514, 927
BglII	AGATCT	1 cut(s)	518
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	3 cut(s)	675, 816, 1008
Bme18I	GGWCC	2 cut(s)	686, 800
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	686, 800
BmrFI	CCNGG	3 cut(s)	675, 816, 1008
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	937
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	690
BsaAI	YACGTR	2 cut(s)	82, 785
BsaBI	GATNNNNATC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	1100
BsaJI	CCNNGG	2 cut(s)	383, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	695, 786
Bse1I	ACTGG	5 cut(s)	274, 707, 763, 913, 1049
Bse3DI	GCAATG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	3 cut(s)	675, 816, 1008
BseDI	CCNNGG	2 cut(s)	383, 475
BseGI	GGATG	3 cut(s)	35, 334, 952
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	695, 786
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	2 cut(s)	1074, 1108
BseNI	ACTGG	5 cut(s)	274, 707, 763, 913, 1049
Bsh1236I	CGCG	1 cut(s)	588
BshFI	GGCC	2 cut(s)	201, 467
BsiHKAI	GWGCWC	1 cut(s)	673
BsiHKCI	CYCGRG	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	695, 786
BsmAI	GTCTC	2 cut(s)	213, 1100
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	201, 467
Bso31I	GGTCTC	1 cut(s)	1100
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	673, 978
Bsp143I	GATC	7 cut(s)	331, 432, 518, 624, 775, 853, 911
Bsp19I	CCATGG	1 cut(s)	383
Bsp68I	TCGCGA	1 cut(s)	588
BspACI	CCGC	2 cut(s)	388, 901
BspANI	GGCC	2 cut(s)	201, 467
BspCNI	CTCAG	2 cut(s)	1075, 1107
BspFNI	CGCG	1 cut(s)	588
BspPI	GGATC	3 cut(s)	770, 848, 919
BspTNI	GGTCTC	1 cut(s)	1100
BsrDI	GCAATG	1 cut(s)	882
BsrI	ACTGG	5 cut(s)	274, 707, 763, 913, 1049
BssECI	CCNNGG	2 cut(s)	383, 475
BssMI	GATC	7 cut(s)	331, 432, 518, 624, 775, 853, 911
BssSI	CACGAG	1 cut(s)	666
BssT1I	CCWWGG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	666
Bst2UI	CCWGG	3 cut(s)	675, 816, 1008
Bst4CI	ACNGT	2 cut(s)	515, 1140
Bst6I	CTCTTC	1 cut(s)	554
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstBAI	YACGTR	2 cut(s)	82, 785
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	4 cut(s)	207, 368, 1083, 1094
BstDSI	CCRYGG	2 cut(s)	383, 475
BstENI	CCTNNNNNAGG	1 cut(s)	784
BstF5I	GGATG	3 cut(s)	35, 334, 952
BstFNI	CGCG	1 cut(s)	588
BstKTI	GATC	7 cut(s)	334, 435, 521, 627, 778, 856, 914
BstMAI	GTCTC	2 cut(s)	213, 1100
BstMBI	GATC	7 cut(s)	331, 432, 518, 624, 775, 853, 911
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	3 cut(s)	675, 816, 1008
BstSCI	CCNGG	3 cut(s)	673, 814, 1006
BstSFI	CTRYAG	2 cut(s)	514, 927
BstSNI	TACGTA	1 cut(s)	82
BstUI	CGCG	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	2 cut(s)	518, 775
BstYI	RGATCY	2 cut(s)	518, 775
BsuRI	GGCC	2 cut(s)	201, 467
BtgI	CCRYGG	2 cut(s)	383, 475
BtsCI	GGATG	3 cut(s)	35, 334, 952
BtsI	GCAGTG	1 cut(s)	970
BtsIMutI	CAGTG	2 cut(s)	442, 970
BtuMI	TCGCGA	1 cut(s)	588
Cac8I	GCNNGC	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	686, 800
CseI	GACGC	1 cut(s)	881
Csp6I	GTAC	4 cut(s)	69, 361, 1074, 1136
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	2 cut(s)	292, 384
CviJI	RGCY	8 cut(s)	201, 321, 404, 467, 693, 822, 926, 976
CviKI_1	RGCY	8 cut(s)	201, 321, 404, 467, 693, 822, 926, 976
CviQI	GTAC	4 cut(s)	69, 361, 1074, 1136
DdeI	CTNAG	4 cut(s)	207, 368, 1083, 1094
DpnI	GATC	7 cut(s)	333, 434, 520, 626, 777, 855, 913
DpnII	GATC	7 cut(s)	331, 432, 518, 624, 775, 853, 911
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
Eco105I	TACGTA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	383
Eco147I	AGGCCT	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	978
Eco31I	GGTCTC	1 cut(s)	1100
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	686, 800
Eco57I	CTGAAG	2 cut(s)	578, 1044
Eco88I	CYCGRG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	784
EcoRII	CCWGG	3 cut(s)	673, 814, 1006
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	978
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	2 cut(s)	295, 387
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	291, 383
FauNDI	CATATG	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	389
FokI	GGATG	3 cut(s)	22, 341, 959
FriOI	GRGCYC	1 cut(s)	978
Fsp4HI	GCNGC	1 cut(s)	389
FspBI	CTAG	3 cut(s)	891, 936, 1016
GluI	GCNGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	201, 467
HgaI	GACGC	1 cut(s)	881
Hin1II	CATG	2 cut(s)	295, 387
HincII	GTYRAC	2 cut(s)	453, 906
HindII	GTYRAC	2 cut(s)	453, 906
HindIII	AAGCTT	1 cut(s)	820
HinfI	GANTC	5 cut(s)	12, 338, 968, 1069, 1085
HphI	GGTGA	1 cut(s)	1038
Hpy166II	GTNNAC	5 cut(s)	16, 453, 906, 1046, 1089
Hpy188I	TCNGA	6 cut(s)	180, 558, 973, 1063, 1084, 1097
Hpy188III	TCNNGA	7 cut(s)	128, 335, 572, 587, 628, 696, 798
Hpy8I	GTNNAC	5 cut(s)	16, 453, 906, 1046, 1089
Hpy99I	CGWCG	2 cut(s)	171, 1130
HpyAV	CCTTC	4 cut(s)	318, 394, 584, 1121
HpyCH4III	ACNGT	2 cut(s)	515, 1140
HpyCH4IV	ACGT	2 cut(s)	81, 784
HpyCH4V	TGCA	4 cut(s)	287, 716, 848, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	4 cut(s)	207, 368, 1083, 1094
HpySE526I	ACGT	2 cut(s)	81, 784
Hsp92II	CATG	2 cut(s)	295, 387
Kzo9I	GATC	7 cut(s)	331, 432, 518, 624, 775, 853, 911
LmnI	GCTCC	1 cut(s)	676
LweI	GCATC	1 cut(s)	937
MaeI	CTAG	3 cut(s)	891, 936, 1016
MaeII	ACGT	2 cut(s)	81, 784
MaeIII	GTNAC	2 cut(s)	339, 572
MalI	GATC	7 cut(s)	333, 434, 520, 626, 777, 855, 913
MboI	GATC	7 cut(s)	331, 432, 518, 624, 775, 853, 911
MboII	GAAGA	5 cut(s)	371, 442, 571, 1020, 1050
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	2 cut(s)	518, 775
MhlI	GDGCHC	2 cut(s)	673, 978
MluCI	AATT	7 cut(s)	145, 262, 459, 491, 793, 954, 1023
MlyI	GAGTC	3 cut(s)	21, 347, 1094
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	1 cut(s)	1119
MspR9I	CCNGG	3 cut(s)	675, 816, 1008
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	3 cut(s)	675, 816, 1008
MvnI	CGCG	1 cut(s)	588
MwoI	GCNNNNNNNGC	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	383
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	7 cut(s)	331, 432, 518, 624, 775, 853, 911
NlaIII	CATG	2 cut(s)	295, 387
NmuCI	GTSAC	2 cut(s)	339, 572
NruI	TCGCGA	1 cut(s)	588
PaeR7I	CTCGAG	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	968, 1069
PflMI	CCANNNNNTGG	1 cut(s)	695
PfoI	TCCNGGA	2 cut(s)	814, 1006
PkrI	GCNGC	1 cut(s)	390
PleI	GAGTC	3 cut(s)	20, 346, 1093
PpsI	GAGTC	3 cut(s)	20, 346, 1093
Ppu21I	YACGTR	2 cut(s)	82, 785
Psp6I	CCWGG	3 cut(s)	673, 814, 1006
PspGI	CCWGG	3 cut(s)	673, 814, 1006
PspPI	GGNCC	2 cut(s)	686, 800
PsuI	RGATCY	2 cut(s)	518, 775
RruI	TCGCGA	1 cut(s)	588
RsaI	GTAC	4 cut(s)	70, 362, 1075, 1137
RsaNI	GTAC	4 cut(s)	69, 361, 1074, 1136
SaqAI	TTAA	1 cut(s)	1119
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	7 cut(s)	331, 432, 518, 624, 775, 853, 911
Sau96I	GGNCC	2 cut(s)	686, 800
SchI	GAGTC	3 cut(s)	21, 347, 1094
ScrFI	CCNGG	3 cut(s)	675, 816, 1008
SduI	GDGCHC	2 cut(s)	673, 978
SfaNI	GCATC	1 cut(s)	937
SfcI	CTRYAG	2 cut(s)	514, 927
Sfr274I	CTCGAG	1 cut(s)	335
SinI	GGWCC	2 cut(s)	686, 800
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SnaBI	TACGTA	1 cut(s)	82
Sse9I	AATT	7 cut(s)	145, 262, 459, 491, 793, 954, 1023
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	2 cut(s)	388, 901
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	3 cut(s)	891, 936, 1016
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	3 cut(s)	673, 814, 1006
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	515, 1140
TaiI	ACGT	2 cut(s)	84, 787
TaqI	TCGA	2 cut(s)	91, 336
TaqII	GACCGA	1 cut(s)	817
TasI	AATT	7 cut(s)	145, 262, 459, 491, 793, 954, 1023
TatI	WGTACW	3 cut(s)	68, 360, 1135
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	968, 1069
Tru1I	TTAA	1 cut(s)	1119
Tru9I	TTAA	1 cut(s)	1119
TscAI	CASTG	2 cut(s)	442, 970
TseFI	GTSAC	2 cut(s)	339, 572
Tsp45I	GTSAC	2 cut(s)	339, 572
TspDTI	ATGAA	3 cut(s)	95, 308, 1103
TspRI	CASTG	2 cut(s)	442, 970
Van91I	CCANNNNNTGG	1 cut(s)	695
VpaK11BI	GGWCC	2 cut(s)	686, 800
XagI	CCTNNNNNAGG	1 cut(s)	784
XapI	RAATTY	4 cut(s)	262, 491, 793, 1023
XhoI	CTCGAG	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	3 cut(s)	891, 936, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.