RLG00000020070
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
60739318 .. 60744031
4714 bp
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UTR
Exon/CDS
Intron
RLM00000020070

Sequence Viewer

Length: 1575 bp
ATGAGAGAACTTGAGTTTCCAATTGTACCCCTAGACACCGCCCTGATTTACACGCCTGCCACTCCCTGCGGGGAGCTGATTTATCTATCCAACTCTTTCTCCAAGACTCGGGGGGTAGGGTTTCACTGTGATCGTCGACTTGTTTGGGCTATGGAGCCTCGAGTTGGGGGGCGGTTTCGACTCGGCCGGAAGATCGGTAGTGGATCCTTCGGAGAGATCTACTTAGGTACTAATATTCAGACGAACGAGGAGGTTGCGATTAAGCTTGAAAATGTCAAGACAAAGCATCCACAGTTGCTGTATGAGTCGAAGTTGTATAAAATACTACAGGGAGGAACTGGAATTCCAAATGTGCGATGGTTTGGCACTGAAGGAGACTACAATGTTCTTGTGATGGATTTATTGGGACCTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAACTTCCTAATGGGATTGGGTCGTCGGGCAAATCAGATTTACGTCATTGACTTTGGCCTCGCTAAGAAGTATAGAGACACATCAACTCATCAGCATATTCCTTATAGAGATAATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAAGCCGAAGGGATGATCTAGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACAAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTCGATGATAAACCAGATTATGCTTATCTGAAGAGACTGTTTCGTGACCTTTTTATTCGTGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACAATCCTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCTTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAGGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGATGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCAAGCAGTCGGGATGCAGTAATTGTTGGCAGTGAATCCGATCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCAGTTGTATCTTCAGAGCAGAATCGTACAACTTCTGGTAGAAATATTTCGACCGTAAAAAACTTAGAGTCCACCCTCAGAGGTATTGAAACCCTTCATTTTAATAGTGACGAGAGAGTACAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

525

Amino Acids

58.75

Weight (kDa)

9.54

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 60 - 277 6.7e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 60 - 283 1.1e-15 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 159 - 256 2e-08 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1094
AccI GTMKAC 1 cut(s) 136
AciI CCGC 4 cut(s) 39, 69, 172, 1300
AclWI GGATC 6 cut(s) 198, 211, 1169, 1247, 1318, 1367
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 5 cut(s) 342, 664, 890, 1192, 1422
AcuI CTGAAG 3 cut(s) 390, 977, 1443
AfaI GTAC 5 cut(s) 27, 229, 764, 1474, 1566
AfiI CCNNNNNNNGG 4 cut(s) 108, 164, 791, 1094
AflII CTTAAG 1 cut(s) 455
AgsI TTSAA 7 cut(s) 269, 430, 716, 799, 1124, 1335, 1535
AjnI CCWGG 3 cut(s) 1072, 1213, 1405
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 4 cut(s) 76, 265, 1092, 1221
AluI AGCT 4 cut(s) 76, 265, 1092, 1221
Alw21I GWGCWC 1 cut(s) 1072
Alw26I GTCTC 4 cut(s) 369, 456, 615, 955
AlwI GGATC 6 cut(s) 198, 211, 1169, 1247, 1318, 1367
AlwNI CAGNNNCTG 1 cut(s) 298
Ama87I CYCGRG 2 cut(s) 108, 159
AoxI GGCC 3 cut(s) 184, 601, 864
ApoI RAATTY 5 cut(s) 342, 664, 890, 1192, 1422
Asp700I GAANNNNTTC 3 cut(s) 993, 1492, 1539
AspS9I GGNCC 4 cut(s) 407, 1085, 1199, 1238
AsuHPI GGTGA 1 cut(s) 1437
AvaI CYCGRG 2 cut(s) 108, 159
AvaII GGWCC 4 cut(s) 407, 1085, 1199, 1238
BamHI GGATCC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 1411, 1443
BauI CACGAG 1 cut(s) 1065
BbsI GAAGAC 1 cut(s) 773
Bbv12I GWGCWC 1 cut(s) 1072
BccI CCATC 3 cut(s) 351, 388, 1264
BceAI ACGGC 1 cut(s) 858
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 3 cut(s) 1074, 1215, 1407
BcoDI GTCTC 4 cut(s) 369, 456, 615, 955
BfaI CTAG 5 cut(s) 32, 411, 737, 1290, 1415
BfmI CTRYAG 3 cut(s) 326, 913, 1326
BfrI CTTAAG 1 cut(s) 455
BglII AGATCT 2 cut(s) 216, 917
Bme1390I CCNGG 3 cut(s) 1074, 1215, 1407
Bme18I GGWCC 4 cut(s) 407, 1085, 1199, 1238
BmeT110I CYCGRG 2 cut(s) 108, 159
BmgT120I GGNCC 4 cut(s) 407, 1085, 1199, 1238
BmiI GGNNCC 3 cut(s) 156, 205, 408
BmrFI CCNGG 3 cut(s) 1074, 1215, 1407
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 3 cut(s) 295, 1261, 1336
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 1 cut(s) 773
BpmI CTGGAG 1 cut(s) 1089
BpuEI CTTGAG 2 cut(s) 32, 437
BsaAI YACGTR 1 cut(s) 1184
BsaJI CCNNGG 2 cut(s) 785, 874
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 1054, 1084
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 164, 791, 1094
Bse1I ACTGG 6 cut(s) 343, 676, 1106, 1162, 1312, 1448
Bse3DI GCAATG 1 cut(s) 1281
BseBI CCWGG 3 cut(s) 1074, 1215, 1407
BseDI CCNNGG 2 cut(s) 785, 874
BseGI GGATG 3 cut(s) 286, 736, 1351
BseLI CCNNNNNNNGG 4 cut(s) 108, 164, 791, 1094
BseMI GCAATG 1 cut(s) 1281
BseMII CTCAG 1 cut(s) 1537
BseNI ACTGG 6 cut(s) 343, 676, 1106, 1162, 1312, 1448
BseRI GAGGAG 1 cut(s) 263
BseX3I CGGCCG 1 cut(s) 184
Bsh1285I CGRYCG 2 cut(s) 187, 1500
BshFI GGCC 3 cut(s) 186, 603, 866
BsiEI CGRYCG 2 cut(s) 187, 1500
BsiHKAI GWGCWC 1 cut(s) 1072
BsiHKCI CYCGRG 2 cut(s) 108, 159
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 420, 688
BslI CCNNNNNNNGG 4 cut(s) 108, 164, 791, 1094
BsmAI GTCTC 4 cut(s) 369, 456, 615, 955
BsmFI GGGAC 2 cut(s) 420, 688
BsnI GGCC 3 cut(s) 186, 603, 866
BsoBI CYCGRG 2 cut(s) 108, 159
Bsp1286I GDGCHC 1 cut(s) 1072
Bsp19I CCATGG 1 cut(s) 785
BspACI CCGC 4 cut(s) 39, 69, 172, 1300
BspANI GGCC 3 cut(s) 186, 603, 866
BspCNI CTCAG 1 cut(s) 1536
BspLI GGNNCC 3 cut(s) 156, 205, 408
BspPI GGATC 6 cut(s) 198, 211, 1169, 1247, 1318, 1367
BspTI CTTAAG 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 1281
BsrI ACTGG 6 cut(s) 343, 676, 1106, 1162, 1312, 1448
BssECI CCNNGG 2 cut(s) 785, 874
BssSI CACGAG 1 cut(s) 1065
BssT1I CCWWGG 1 cut(s) 785
Bst2BI CACGAG 1 cut(s) 1065
Bst2UI CCWGG 3 cut(s) 1074, 1215, 1407
Bst4CI ACNGT 7 cut(s) 128, 294, 463, 914, 966, 1501, 1569
Bst6I CTCTTC 1 cut(s) 953
BstAFI CTTAAG 1 cut(s) 455
BstAPI GCANNNNNTGC 1 cut(s) 686
BstBAI YACGTR 1 cut(s) 1184
BstC8I GCNNGC 3 cut(s) 57, 474, 691
BstDEI CTNAG 5 cut(s) 223, 609, 770, 1510, 1523
BstDSI CCRYGG 2 cut(s) 785, 874
BstF5I GGATG 3 cut(s) 286, 736, 1351
BstMAI GTCTC 4 cut(s) 369, 456, 615, 955
BstMCI CGRYCG 2 cut(s) 187, 1500
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNI CCWGG 3 cut(s) 1074, 1215, 1407
BstSCI CCNGG 3 cut(s) 1072, 1213, 1405
BstSFI CTRYAG 3 cut(s) 326, 913, 1326
BstV2I GAAGAC 1 cut(s) 773
BstX2I RGATCY 4 cut(s) 203, 216, 917, 1174
BstYI RGATCY 4 cut(s) 203, 216, 917, 1174
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 3 cut(s) 186, 603, 866
BtgI CCRYGG 2 cut(s) 785, 874
BtgZI GCGATG 1 cut(s) 370
BtsCI GGATG 3 cut(s) 286, 736, 1351
BtsI GCAGTG 1 cut(s) 1369
BtsIMutI CAGTG 4 cut(s) 124, 366, 841, 1369
Cac8I GCNNGC 3 cut(s) 57, 474, 691
CaiI CAGNNNCTG 1 cut(s) 298
Cfr13I GGNCC 4 cut(s) 407, 1085, 1199, 1238
Csp6I GTAC 5 cut(s) 26, 228, 763, 1473, 1565
CspCI CAANNNNNGTGG 2 cut(s) 874, 909
CviAII CATG 3 cut(s) 469, 694, 786
CviQI GTAC 5 cut(s) 26, 228, 763, 1473, 1565
DdeI CTNAG 5 cut(s) 223, 609, 770, 1510, 1523
EaeI YGGCCR 1 cut(s) 184
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 953
EarI CTCTTC 1 cut(s) 953
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 785
Eco147I AGGCCT 1 cut(s) 866
Eco32I GATATC 1 cut(s) 535
Eco47I GGWCC 4 cut(s) 407, 1085, 1199, 1238
Eco52I CGGCCG 1 cut(s) 184
Eco57I CTGAAG 3 cut(s) 390, 977, 1443
Eco88I CYCGRG 2 cut(s) 108, 159
EcoO109I RGGNCCY 2 cut(s) 407, 1238
EcoRI GAATTC 1 cut(s) 342
EcoRII CCWGG 3 cut(s) 1072, 1213, 1405
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 785
ErhI CCWWGG 1 cut(s) 785
FaeI CATG 3 cut(s) 472, 697, 789
FaqI GGGAC 2 cut(s) 420, 688
FatI CATG 3 cut(s) 468, 693, 785
FauI CCCGC 1 cut(s) 62
FblI GTMKAC 1 cut(s) 136
FokI GGATG 3 cut(s) 273, 743, 1358
FspBI CTAG 5 cut(s) 32, 411, 737, 1290, 1415
GsuI CTGGAG 1 cut(s) 1089
HaeIII GGCC 3 cut(s) 186, 603, 866
HapII CCGG 1 cut(s) 187
Hin1II CATG 3 cut(s) 472, 697, 789
HincII GTYRAC 3 cut(s) 137, 852, 1305
HindII GTYRAC 3 cut(s) 137, 852, 1305
HindIII AAGCTT 2 cut(s) 263, 1219
HinfI GANTC 7 cut(s) 106, 180, 305, 740, 1367, 1468, 1514
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 1437
Hpy166II GTNNAC 5 cut(s) 137, 852, 1305, 1445, 1518
Hpy188I TCNGA 7 cut(s) 212, 240, 582, 957, 1372, 1462, 1526
Hpy8I GTNNAC 5 cut(s) 137, 852, 1305, 1445, 1518
Hpy99I CGWCG 2 cut(s) 138, 573
HpyAV CCTTC 7 cut(s) 217, 365, 720, 793, 983, 1188, 1550
HpyCH4III ACNGT 7 cut(s) 128, 294, 463, 914, 966, 1501, 1569
HpyCH4IV ACGT 3 cut(s) 588, 925, 1183
HpyCH4V TGCA 7 cut(s) 438, 476, 689, 1115, 1247, 1274, 1349
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 5 cut(s) 223, 609, 770, 1510, 1523
HpySE526I ACGT 3 cut(s) 588, 925, 1183
Hsp92II CATG 3 cut(s) 472, 697, 789
LmnI GCTCC 3 cut(s) 73, 154, 1075
LweI GCATC 3 cut(s) 295, 1261, 1336
MaeI CTAG 5 cut(s) 32, 411, 737, 1290, 1415
MaeII ACGT 3 cut(s) 588, 925, 1183
MaeIII GTNAC 3 cut(s) 741, 971, 1553
MboII GAAGA 6 cut(s) 202, 773, 841, 970, 1419, 1449
MfeI CAATTG 2 cut(s) 21, 858
MflI RGATCY 4 cut(s) 203, 216, 917, 1174
MhlI GDGCHC 1 cut(s) 1072
MluCI AATT 8 cut(s) 21, 342, 664, 858, 890, 1192, 1353, 1422
MlyI GAGTC 5 cut(s) 100, 174, 314, 749, 1523
MmeI TCCRAC 1 cut(s) 114
MroXI GAANNNNTTC 3 cut(s) 993, 1492, 1539
MseI TTAA 3 cut(s) 261, 456, 1548
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 3 cut(s) 1074, 1215, 1407
MunI CAATTG 2 cut(s) 21, 858
MvaI CCWGG 3 cut(s) 1074, 1215, 1407
MwoI GCNNNNNNNGC 1 cut(s) 686
NcoI CCATGG 1 cut(s) 785
NlaIII CATG 3 cut(s) 472, 697, 789
NlaIV GGNNCC 3 cut(s) 156, 205, 408
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 3 cut(s) 741, 971, 1553
PaeR7I CTCGAG 1 cut(s) 159
PceI AGGCCT 1 cut(s) 866
PdmI GAANNNNTTC 3 cut(s) 993, 1492, 1539
PfeI GAWTC 2 cut(s) 1367, 1468
PflFI GACNNNGTC 1 cut(s) 411
PflMI CCANNNNNTGG 1 cut(s) 1094
PfoI TCCNGGA 2 cut(s) 1213, 1405
PleI GAGTC 5 cut(s) 100, 174, 313, 748, 1522
PpsI GAGTC 5 cut(s) 100, 174, 313, 748, 1522
Ppu21I YACGTR 1 cut(s) 1184
PpuMI RGGWCCY 2 cut(s) 407, 1238
Psp5II RGGWCCY 2 cut(s) 407, 1238
Psp6I CCWGG 3 cut(s) 1072, 1213, 1405
PspGI CCWGG 3 cut(s) 1072, 1213, 1405
PspN4I GGNNCC 3 cut(s) 156, 205, 408
PspPI GGNCC 4 cut(s) 407, 1085, 1199, 1238
PspPPI RGGWCCY 2 cut(s) 407, 1238
PspXI VCTCGAGB 1 cut(s) 159
PstNI CAGNNNCTG 1 cut(s) 298
PsuI RGATCY 4 cut(s) 203, 216, 917, 1174
PsyI GACNNNGTC 1 cut(s) 411
RsaI GTAC 5 cut(s) 27, 229, 764, 1474, 1566
RsaNI GTAC 5 cut(s) 26, 228, 763, 1473, 1565
SalI GTCGAC 1 cut(s) 135
SaqAI TTAA 3 cut(s) 261, 456, 1548
Sau96I GGNCC 4 cut(s) 407, 1085, 1199, 1238
SchI GAGTC 5 cut(s) 100, 174, 314, 749, 1523
ScrFI CCNGG 3 cut(s) 1074, 1215, 1407
SduI GDGCHC 1 cut(s) 1072
SfaNI GCATC 3 cut(s) 295, 1261, 1336
SfcI CTRYAG 3 cut(s) 326, 913, 1326
Sfr274I CTCGAG 1 cut(s) 159
SinI GGWCC 4 cut(s) 407, 1085, 1199, 1238
SlaI CTCGAG 1 cut(s) 159
SmlI CTYRAG 4 cut(s) 11, 159, 416, 455
SmoI CTYRAG 4 cut(s) 11, 159, 416, 455
Sse9I AATT 8 cut(s) 21, 342, 664, 858, 890, 1192, 1353, 1422
SseBI AGGCCT 1 cut(s) 866
SsiI CCGC 4 cut(s) 39, 69, 172, 1300
SspI AATATT 2 cut(s) 235, 1492
SspMI CTAG 5 cut(s) 32, 411, 737, 1290, 1415
StuI AGGCCT 1 cut(s) 866
StyD4I CCNGG 3 cut(s) 1072, 1213, 1405
StyI CCWWGG 1 cut(s) 785
TaaI ACNGT 7 cut(s) 128, 294, 463, 914, 966, 1501, 1569
TaiI ACGT 3 cut(s) 591, 928, 1186
TaqI TCGA 7 cut(s) 136, 160, 178, 308, 493, 930, 1496
TaqII GACCGA 1 cut(s) 1216
TasI AATT 8 cut(s) 21, 342, 664, 858, 890, 1192, 1353, 1422
TatI WGTACW 2 cut(s) 762, 1564
TfiI GAWTC 2 cut(s) 1367, 1468
Tru1I TTAA 3 cut(s) 261, 456, 1548
Tru9I TTAA 3 cut(s) 261, 456, 1548
TscAI CASTG 4 cut(s) 131, 373, 841, 1369
TseFI GTSAC 3 cut(s) 741, 971, 1553
Tsp45I GTSAC 3 cut(s) 741, 971, 1553
TspDTI ATGAA 3 cut(s) 497, 710, 1532
TspRI CASTG 4 cut(s) 131, 373, 841, 1369
Tth111I GACNNNGTC 1 cut(s) 411
Van91I CCANNNNNTGG 1 cut(s) 1094
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 4 cut(s) 407, 1085, 1199, 1238
XapI RAATTY 5 cut(s) 342, 664, 890, 1192, 1422
XbaI TCTAGA 1 cut(s) 736
XcmI CCANNNNNNNNNTGG 1 cut(s) 354
XhoI CTCGAG 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 136
XmnI GAANNNNTTC 3 cut(s) 993, 1492, 1539
XspI CTAG 5 cut(s) 32, 411, 737, 1290, 1415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.