RchiOBHm_Chr2g0143831
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
61453470 .. 61456804
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51390

Sequence Viewer

Length: 1485 bp
ATGACATGGGGTTGCTATATTTTCTTCTTGCTGATTTGTGCTTCTCTTTCTCAAGAAAATGTCAAGACAAAGCATCCACAGTTGCTGTATGAGTCGAAGTTTATAAAATACTACAGGGAGGAAGTAATAGCCTTCACCACTATCCTTTTTTGCTTTTTCTCTGGAATTCCAAATGTGCGATGGTTTGGCACCGAAGGAGACTACAACGTTCTTGTGATGGATTTATTGGGACCTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAAGTTCCTAATGGGATTGGGTCGTCGGGCAAATCAGATTTACATCATTGACTTCGGCCTCGCTAAGAAGTATAGAGACACATCAACCCATCAGCGTATTCCTTATAGAGATAATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAAGCCGAAGGGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGTTTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAACCAGATTATGCTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTTGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACGATCTTGAAATATCAGCAGTCGAAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCTGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGACGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCAGTAATTGTTGGCAGTGAATCCGAGCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCAGTTGTATCTTCAGAGCAGAATCGTACCACTTCTGGTAGAAATATTTCGACCGTAAAAAACTTAAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTTAATAGCGACGAGAGAGTACAGTATTAGCAGTCGCTTCTCTCAATATGTCGCCCACTGTAAAATTGAAAAACGGTATACAGTTCTCACACACTTCAGGTGGAATTTGTTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

494

Amino Acids

56.08

Weight (kDa)

9.62

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 65 - 218 6.8e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 68 - 223 4.1e-07 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 101 - 197 8.6e-07 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 917
AccI GTMKAC 1 cut(s) 1445
AciI CCGC 1 cut(s) 1123
AclI AACGTT 1 cut(s) 207
AclWI GGATC 3 cut(s) 992, 1070, 1141
AcsI RAATTY 6 cut(s) 165, 487, 713, 1015, 1245, 1471
AcuI CTGAAG 3 cut(s) 800, 1266, 1447
AfaI GTAC 3 cut(s) 587, 1297, 1388
AfiI CCNNNNNNNGG 3 cut(s) 614, 917, 1008
AflII CTTAAG 2 cut(s) 278, 1333
AgsI TTSAA 6 cut(s) 253, 539, 622, 853, 947, 1436
AjnI CCWGG 3 cut(s) 895, 1036, 1228
AluBI AGCT 2 cut(s) 915, 1044
AluI AGCT 2 cut(s) 915, 1044
Alw21I GWGCWC 1 cut(s) 895
Alw26I GTCTC 4 cut(s) 192, 279, 438, 1351
AlwI GGATC 3 cut(s) 992, 1070, 1141
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 1 cut(s) 424
ApoI RAATTY 6 cut(s) 165, 487, 713, 1015, 1245, 1471
Asp700I GAANNNNTTC 2 cut(s) 816, 1315
AspS9I GGNCC 3 cut(s) 230, 908, 1022
AsuHPI GGTGA 2 cut(s) 127, 1260
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 3 cut(s) 230, 908, 1022
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 1200
BarI GAAGNNNNNNTAC 2 cut(s) 1234, 1266
BauI CACGAG 1 cut(s) 888
BbsI GAAGAC 1 cut(s) 596
Bbv12I GWGCWC 1 cut(s) 895
BccI CCATC 4 cut(s) 174, 211, 465, 1087
BceAI ACGGC 1 cut(s) 681
BciT130I CCWGG 3 cut(s) 897, 1038, 1230
BcoDI GTCTC 4 cut(s) 192, 279, 438, 1351
BfaI CTAG 4 cut(s) 234, 1113, 1158, 1238
BfmI CTRYAG 3 cut(s) 112, 736, 1149
BfrI CTTAAG 2 cut(s) 278, 1333
BglII AGATCT 1 cut(s) 740
Bme1390I CCNGG 3 cut(s) 897, 1038, 1230
Bme18I GGWCC 3 cut(s) 230, 908, 1022
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 3 cut(s) 230, 908, 1022
BmiI GGNNCC 2 cut(s) 190, 231
BmrFI CCNGG 3 cut(s) 897, 1038, 1230
BmrI ACTGGG 1 cut(s) 504
BmsI GCATC 2 cut(s) 82, 1159
BmuI ACTGGG 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 596
BpuEI CTTGAG 2 cut(s) 36, 260
BsaAI YACGTR 1 cut(s) 1007
BsaBI GATNNNNATC 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 1351
BsaJI CCNNGG 2 cut(s) 608, 697
BsaXI ACNNNNNCTCC 2 cut(s) 877, 907
Bsc4I CCNNNNNNNGG 3 cut(s) 614, 917, 1008
Bse1I ACTGG 4 cut(s) 499, 985, 1135, 1271
Bse3DI GCAATG 1 cut(s) 1104
Bse8I GATNNNNATC 1 cut(s) 410
BseBI CCWGG 3 cut(s) 897, 1038, 1230
BseDI CCNNGG 2 cut(s) 608, 697
BseGI GGATG 3 cut(s) 73, 559, 1174
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 3 cut(s) 614, 917, 1008
BseMI GCAATG 1 cut(s) 1104
BseMII CTCAG 1 cut(s) 1359
BseNI ACTGG 4 cut(s) 499, 985, 1135, 1271
Bsh1285I CGRYCG 1 cut(s) 1323
BshFI GGCC 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 1323
BsiHKAI GWGCWC 1 cut(s) 895
BsiHKCI CYCGRG 1 cut(s) 560
BslFI GGGAC 2 cut(s) 243, 511
BslI CCNNNNNNNGG 3 cut(s) 614, 917, 1008
BsmAI GTCTC 4 cut(s) 192, 279, 438, 1351
BsmFI GGGAC 2 cut(s) 243, 511
BsnI GGCC 1 cut(s) 426
Bso31I GGTCTC 1 cut(s) 1351
BsoBI CYCGRG 1 cut(s) 560
Bsp1286I GDGCHC 2 cut(s) 895, 1200
Bsp143I GATC 8 cut(s) 301, 556, 654, 740, 846, 997, 1075, 1133
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 1 cut(s) 1123
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 1 cut(s) 1358
BspLI GGNNCC 2 cut(s) 190, 231
BspPI GGATC 3 cut(s) 992, 1070, 1141
BspT107I GGYRCC 1 cut(s) 188
BspTI CTTAAG 2 cut(s) 278, 1333
BspTNI GGTCTC 1 cut(s) 1351
BsrDI GCAATG 1 cut(s) 1104
BsrI ACTGG 4 cut(s) 499, 985, 1135, 1271
BssECI CCNNGG 2 cut(s) 608, 697
BssMI GATC 8 cut(s) 301, 556, 654, 740, 846, 997, 1075, 1133
BssNAI GTATAC 1 cut(s) 1446
BssSI CACGAG 1 cut(s) 888
BssT1I CCWWGG 1 cut(s) 608
Bst1107I GTATAC 1 cut(s) 1446
Bst2BI CACGAG 1 cut(s) 888
Bst2UI CCWGG 3 cut(s) 897, 1038, 1230
Bst4CI ACNGT 8 cut(s) 81, 286, 737, 1324, 1391, 1427, 1443, 1450
Bst6I CTCTTC 1 cut(s) 776
BstAFI CTTAAG 2 cut(s) 278, 1333
BstAPI GCANNNNNTGC 1 cut(s) 509
BstBAI YACGTR 1 cut(s) 1007
BstC8I GCNNGC 2 cut(s) 297, 514
BstDEI CTNAG 3 cut(s) 432, 593, 1345
BstDSI CCRYGG 2 cut(s) 608, 697
BstENI CCTNNNNNAGG 1 cut(s) 1006
BstF5I GGATG 3 cut(s) 73, 559, 1174
BstKTI GATC 8 cut(s) 304, 559, 657, 743, 849, 1000, 1078, 1136
BstMAI GTCTC 4 cut(s) 192, 279, 438, 1351
BstMBI GATC 8 cut(s) 301, 556, 654, 740, 846, 997, 1075, 1133
BstMCI CGRYCG 1 cut(s) 1323
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstNI CCWGG 3 cut(s) 897, 1038, 1230
BstSCI CCNGG 3 cut(s) 895, 1036, 1228
BstSFI CTRYAG 3 cut(s) 112, 736, 1149
BstV2I GAAGAC 1 cut(s) 596
BstX2I RGATCY 2 cut(s) 740, 997
BstYI RGATCY 2 cut(s) 740, 997
BstZ17I GTATAC 1 cut(s) 1446
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 2 cut(s) 608, 697
BtgZI GCGATG 1 cut(s) 193
BtsCI GGATG 3 cut(s) 73, 559, 1174
BtsI GCAGTG 1 cut(s) 1192
BtsIMutI CAGTG 3 cut(s) 664, 1192, 1423
Cac8I GCNNGC 2 cut(s) 297, 514
CaiI CAGNNNCTG 1 cut(s) 85
Cfr13I GGNCC 3 cut(s) 230, 908, 1022
CseI GACGC 1 cut(s) 1103
Csp6I GTAC 3 cut(s) 586, 1296, 1387
CspCI CAANNNNNGTGG 2 cut(s) 697, 732
CviAII CATG 4 cut(s) 6, 292, 517, 609
CviJI RGCY 8 cut(s) 131, 426, 546, 626, 915, 1044, 1148, 1198
CviKI_1 RGCY 8 cut(s) 131, 426, 546, 626, 915, 1044, 1148, 1198
CviQI GTAC 3 cut(s) 586, 1296, 1387
DdeI CTNAG 3 cut(s) 432, 593, 1345
DpnI GATC 8 cut(s) 303, 558, 656, 742, 848, 999, 1077, 1135
DpnII GATC 8 cut(s) 301, 556, 654, 740, 846, 997, 1075, 1133
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
Eco130I CCWWGG 1 cut(s) 608
Eco24I GRGCYC 1 cut(s) 1200
Eco31I GGTCTC 1 cut(s) 1351
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 3 cut(s) 230, 908, 1022
Eco57I CTGAAG 3 cut(s) 800, 1266, 1447
Eco88I CYCGRG 1 cut(s) 560
EcoNI CCTNNNNNAGG 1 cut(s) 1006
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 3 cut(s) 895, 1036, 1228
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 608
EcoT38I GRGCYC 1 cut(s) 1200
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 4 cut(s) 9, 295, 520, 612
FaqI GGGAC 2 cut(s) 243, 511
FatI CATG 4 cut(s) 5, 291, 516, 608
FblI GTMKAC 1 cut(s) 1445
FokI GGATG 3 cut(s) 60, 566, 1181
FriOI GRGCYC 1 cut(s) 1200
FspBI CTAG 4 cut(s) 234, 1113, 1158, 1238
HaeIII GGCC 1 cut(s) 426
HgaI GACGC 1 cut(s) 1103
Hin1II CATG 4 cut(s) 9, 295, 520, 612
HincII GTYRAC 2 cut(s) 675, 1128
HindII GTYRAC 2 cut(s) 675, 1128
HindIII AAGCTT 1 cut(s) 1042
HinfI GANTC 4 cut(s) 92, 563, 1190, 1291
HphI GGTGA 2 cut(s) 127, 1260
Hpy166II GTNNAC 5 cut(s) 675, 1128, 1268, 1340, 1446
Hpy188I TCNGA 5 cut(s) 405, 780, 1195, 1285, 1348
Hpy8I GTNNAC 5 cut(s) 675, 1128, 1268, 1340, 1446
Hpy99I CGWCG 2 cut(s) 396, 1381
HpyAV CCTTC 6 cut(s) 142, 188, 543, 616, 806, 1372
HpyCH4III ACNGT 8 cut(s) 81, 286, 737, 1324, 1391, 1427, 1443, 1450
HpyCH4IV ACGT 3 cut(s) 207, 748, 1006
HpyCH4V TGCA 6 cut(s) 261, 299, 512, 938, 1070, 1172
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 3 cut(s) 432, 593, 1345
HpySE526I ACGT 3 cut(s) 207, 748, 1006
Hsp92II CATG 4 cut(s) 9, 295, 520, 612
Kzo9I GATC 8 cut(s) 301, 556, 654, 740, 846, 997, 1075, 1133
LmnI GCTCC 1 cut(s) 898
LweI GCATC 2 cut(s) 82, 1159
MaeI CTAG 4 cut(s) 234, 1113, 1158, 1238
MaeII ACGT 3 cut(s) 207, 748, 1006
MaeIII GTNAC 2 cut(s) 564, 794
MalI GATC 8 cut(s) 303, 558, 656, 742, 848, 999, 1077, 1135
MboI GATC 8 cut(s) 301, 556, 654, 740, 846, 997, 1075, 1133
MboII GAAGA 7 cut(s) 16, 596, 664, 793, 880, 1242, 1272
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 2 cut(s) 740, 997
MhlI GDGCHC 2 cut(s) 895, 1200
MluCI AATT 9 cut(s) 165, 487, 681, 713, 1015, 1176, 1245, 1431, 1471
MlyI GAGTC 2 cut(s) 101, 572
MroXI GAANNNNTTC 2 cut(s) 816, 1315
MseI TTAA 4 cut(s) 279, 1334, 1370, 1483
MspCI CTTAAG 2 cut(s) 278, 1333
MspR9I CCNGG 3 cut(s) 897, 1038, 1230
MunI CAATTG 1 cut(s) 681
MvaI CCWGG 3 cut(s) 897, 1038, 1230
MwoI GCNNNNNNNGC 1 cut(s) 509
NcoI CCATGG 1 cut(s) 608
NdeII GATC 8 cut(s) 301, 556, 654, 740, 846, 997, 1075, 1133
NlaIII CATG 4 cut(s) 9, 295, 520, 612
NlaIV GGNNCC 2 cut(s) 190, 231
NmuCI GTSAC 2 cut(s) 564, 794
PaeR7I CTCGAG 1 cut(s) 560
PdmI GAANNNNTTC 2 cut(s) 816, 1315
PfeI GAWTC 2 cut(s) 1190, 1291
PflFI GACNNNGTC 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 917
PfoI TCCNGGA 2 cut(s) 1036, 1228
PleI GAGTC 2 cut(s) 100, 571
PpsI GAGTC 2 cut(s) 100, 571
Ppu21I YACGTR 1 cut(s) 1007
PpuMI RGGWCCY 1 cut(s) 230
PsiI TTATAA 1 cut(s) 104
Psp1406I AACGTT 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 3 cut(s) 895, 1036, 1228
PspGI CCWGG 3 cut(s) 895, 1036, 1228
PspN4I GGNNCC 2 cut(s) 190, 231
PspPI GGNCC 3 cut(s) 230, 908, 1022
PspPPI RGGWCCY 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 2 cut(s) 740, 997
PsyI GACNNNGTC 1 cut(s) 234
RsaI GTAC 3 cut(s) 587, 1297, 1388
RsaNI GTAC 3 cut(s) 586, 1296, 1387
SaqAI TTAA 4 cut(s) 279, 1334, 1370, 1483
Sau3AI GATC 8 cut(s) 301, 556, 654, 740, 846, 997, 1075, 1133
Sau96I GGNCC 3 cut(s) 230, 908, 1022
SchI GAGTC 2 cut(s) 101, 572
ScrFI CCNGG 3 cut(s) 897, 1038, 1230
SduI GDGCHC 2 cut(s) 895, 1200
SfaNI GCATC 2 cut(s) 82, 1159
SfcI CTRYAG 3 cut(s) 112, 736, 1149
Sfr274I CTCGAG 1 cut(s) 560
SinI GGWCC 3 cut(s) 230, 908, 1022
SlaI CTCGAG 1 cut(s) 560
SmlI CTYRAG 5 cut(s) 51, 239, 278, 560, 1333
SmoI CTYRAG 5 cut(s) 51, 239, 278, 560, 1333
Sse9I AATT 9 cut(s) 165, 487, 681, 713, 1015, 1176, 1245, 1431, 1471
SsiI CCGC 1 cut(s) 1123
SspI AATATT 1 cut(s) 1315
SspMI CTAG 4 cut(s) 234, 1113, 1158, 1238
StyD4I CCNGG 3 cut(s) 895, 1036, 1228
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 8 cut(s) 81, 286, 737, 1324, 1391, 1427, 1443, 1450
TaiI ACGT 3 cut(s) 210, 751, 1009
TaqI TCGA 5 cut(s) 95, 316, 561, 866, 1319
TaqII GACCGA 1 cut(s) 1039
TasI AATT 9 cut(s) 165, 487, 681, 713, 1015, 1176, 1245, 1431, 1471
TatI WGTACW 2 cut(s) 585, 1386
TfiI GAWTC 2 cut(s) 1190, 1291
Tru1I TTAA 4 cut(s) 279, 1334, 1370, 1483
Tru9I TTAA 4 cut(s) 279, 1334, 1370, 1483
TscAI CASTG 3 cut(s) 664, 1192, 1430
TseFI GTSAC 2 cut(s) 564, 794
Tsp45I GTSAC 2 cut(s) 564, 794
TspDTI ATGAA 3 cut(s) 320, 533, 1354
TspRI CASTG 3 cut(s) 664, 1192, 1430
Tth111I GACNNNGTC 1 cut(s) 234
Van91I CCANNNNNTGG 1 cut(s) 917
Vha464I CTTAAG 2 cut(s) 278, 1333
VpaK11BI GGWCC 3 cut(s) 230, 908, 1022
XagI CCTNNNNNAGG 1 cut(s) 1006
XapI RAATTY 6 cut(s) 165, 487, 713, 1015, 1245, 1471
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XhoI CTCGAG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 1445
XmnI GAANNNNTTC 2 cut(s) 816, 1315
XspI CTAG 4 cut(s) 234, 1113, 1158, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.