Rh2DG457800
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003081
Physical Location & Seq
Forward (+)
66192635 .. 66197425
4791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG457800.1

Sequence Viewer

Length: 969 bp
ATGAATACTCATCTTGGCATTGAACAAAGCCGAAGGGATGATCTCGAATCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTTAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAACCAGATTATGCATATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGATGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCAGTAATTGTTGGCAGTGAATCCGAGCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCAGTTGTATCTTCAGAGCAGAATCGTACCACTTCTGGTAGAAATATTTCGACCGTAAAAAACTTAAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTTAATAGCGACGAGAGAGTACAGTATTAGCAGTCGCTTCTCTCAATATGTCGCCCACTGTAAATTTGAAAAACGGTATACAGTTCTCACACACTTCGGGTGGAATTTGTTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

322

Amino Acids

35.93

Weight (kDa)

9.78

Isoelectric Point (pI)

71.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 401
AccI GTMKAC 1 cut(s) 929
AccII CGCG 1 cut(s) 294
AciI CCGC 1 cut(s) 607
AclWI GGATC 3 cut(s) 476, 554, 625
AcsI RAATTY 5 cut(s) 197, 499, 729, 914, 955
AcuI CTGAAG 2 cut(s) 284, 750
AfaI GTAC 3 cut(s) 71, 781, 872
AfiI CCNNNNNNNGG 3 cut(s) 98, 401, 492
AflII CTTAAG 1 cut(s) 817
AgsI TTSAA 4 cut(s) 23, 337, 431, 920
AjnI CCWGG 3 cut(s) 379, 520, 712
AluBI AGCT 2 cut(s) 399, 528
AluI AGCT 2 cut(s) 399, 528
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 3 cut(s) 476, 554, 625
AoxI GGCC 1 cut(s) 171
ApoI RAATTY 5 cut(s) 197, 499, 729, 914, 955
Asp700I GAANNNNTTC 2 cut(s) 300, 799
AspS9I GGNCC 2 cut(s) 392, 506
AsuHPI GGTGA 1 cut(s) 744
AvaII GGWCC 2 cut(s) 392, 506
BanII GRGCYC 1 cut(s) 684
BarI GAAGNNNNNNTAC 2 cut(s) 718, 750
BauI CACGAG 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 379
BccI CCATC 1 cut(s) 571
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 3 cut(s) 381, 522, 714
BcoDI GTCTC 1 cut(s) 835
BfaI CTAG 3 cut(s) 597, 642, 722
BfmI CTRYAG 2 cut(s) 220, 633
BfrI CTTAAG 1 cut(s) 817
BglII AGATCT 1 cut(s) 224
Bme1390I CCNGG 3 cut(s) 381, 522, 714
Bme18I GGWCC 2 cut(s) 392, 506
BmgT120I GGNCC 2 cut(s) 392, 506
BmrFI CCNGG 3 cut(s) 381, 522, 714
BmsI GCATC 2 cut(s) 568, 643
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 396
BsaAI YACGTR 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 835
BsaJI CCNNGG 2 cut(s) 92, 181
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 401, 492
Bse1I ACTGG 4 cut(s) 413, 469, 619, 755
Bse3DI GCAATG 1 cut(s) 588
BseBI CCWGG 3 cut(s) 381, 522, 714
BseDI CCNNGG 2 cut(s) 92, 181
BseGI GGATG 2 cut(s) 43, 658
BseLI CCNNNNNNNGG 3 cut(s) 98, 401, 492
BseMI GCAATG 1 cut(s) 588
BseMII CTCAG 1 cut(s) 843
BseNI ACTGG 4 cut(s) 413, 469, 619, 755
Bsh1236I CGCG 1 cut(s) 294
Bsh1285I CGRYCG 1 cut(s) 807
BshFI GGCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 807
BsiHKAI GWGCWC 1 cut(s) 379
BslI CCNNNNNNNGG 3 cut(s) 98, 401, 492
BsmAI GTCTC 1 cut(s) 835
BsnI GGCC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 835
Bsp1286I GDGCHC 2 cut(s) 379, 684
Bsp143I GATC 7 cut(s) 40, 138, 224, 330, 481, 559, 617
Bsp19I CCATGG 1 cut(s) 92
Bsp68I TCGCGA 1 cut(s) 294
BspACI CCGC 1 cut(s) 607
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 842
BspFNI CGCG 1 cut(s) 294
BspPI GGATC 3 cut(s) 476, 554, 625
BspTI CTTAAG 1 cut(s) 817
BspTNI GGTCTC 1 cut(s) 835
BsrDI GCAATG 1 cut(s) 588
BsrI ACTGG 4 cut(s) 413, 469, 619, 755
BssECI CCNNGG 2 cut(s) 92, 181
BssMI GATC 7 cut(s) 40, 138, 224, 330, 481, 559, 617
BssNAI GTATAC 1 cut(s) 930
BssSI CACGAG 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 92
Bst1107I GTATAC 1 cut(s) 930
Bst2BI CACGAG 1 cut(s) 372
Bst2UI CCWGG 3 cut(s) 381, 522, 714
Bst4CI ACNGT 6 cut(s) 221, 808, 875, 911, 927, 934
Bst6I CTCTTC 1 cut(s) 260
BstAFI CTTAAG 1 cut(s) 817
BstBAI YACGTR 1 cut(s) 491
BstDEI CTNAG 2 cut(s) 77, 829
BstDSI CCRYGG 2 cut(s) 92, 181
BstENI CCTNNNNNAGG 1 cut(s) 490
BstF5I GGATG 2 cut(s) 43, 658
BstFNI CGCG 1 cut(s) 294
BstKTI GATC 7 cut(s) 43, 141, 227, 333, 484, 562, 620
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 7 cut(s) 40, 138, 224, 330, 481, 559, 617
BstMCI CGRYCG 1 cut(s) 807
BstNI CCWGG 3 cut(s) 381, 522, 714
BstSCI CCNGG 3 cut(s) 379, 520, 712
BstSFI CTRYAG 2 cut(s) 220, 633
BstUI CGCG 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 2 cut(s) 224, 481
BstYI RGATCY 2 cut(s) 224, 481
BstZ17I GTATAC 1 cut(s) 930
BsuRI GGCC 1 cut(s) 173
BtgI CCRYGG 2 cut(s) 92, 181
BtsCI GGATG 2 cut(s) 43, 658
BtsI GCAGTG 1 cut(s) 676
BtsIMutI CAGTG 3 cut(s) 148, 676, 907
BtuMI TCGCGA 1 cut(s) 294
Cfr13I GGNCC 2 cut(s) 392, 506
Csp6I GTAC 3 cut(s) 70, 780, 871
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 1 cut(s) 93
CviJI RGCY 7 cut(s) 30, 110, 173, 399, 528, 632, 682
CviKI_1 RGCY 7 cut(s) 30, 110, 173, 399, 528, 632, 682
CviQI GTAC 3 cut(s) 70, 780, 871
DdeI CTNAG 2 cut(s) 77, 829
DpnI GATC 7 cut(s) 42, 140, 226, 332, 483, 561, 619
DpnII GATC 7 cut(s) 40, 138, 224, 330, 481, 559, 617
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 92
Eco147I AGGCCT 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 684
Eco31I GGTCTC 1 cut(s) 835
Eco47I GGWCC 2 cut(s) 392, 506
Eco57I CTGAAG 2 cut(s) 284, 750
EcoNI CCTNNNNNAGG 1 cut(s) 490
EcoRII CCWGG 3 cut(s) 379, 520, 712
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 96
FatI CATG 1 cut(s) 92
FblI GTMKAC 1 cut(s) 929
FokI GGATG 2 cut(s) 50, 665
FriOI GRGCYC 1 cut(s) 684
FspBI CTAG 3 cut(s) 597, 642, 722
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 1 cut(s) 96
HincII GTYRAC 2 cut(s) 159, 612
HindII GTYRAC 2 cut(s) 159, 612
HindIII AAGCTT 1 cut(s) 526
HinfI GANTC 3 cut(s) 47, 674, 775
HphI GGTGA 1 cut(s) 744
Hpy166II GTNNAC 5 cut(s) 159, 612, 752, 824, 930
Hpy188I TCNGA 4 cut(s) 264, 679, 769, 832
Hpy188III TCNNGA 7 cut(s) 44, 278, 293, 334, 402, 504, 650
Hpy8I GTNNAC 5 cut(s) 159, 612, 752, 824, 930
Hpy99I CGWCG 1 cut(s) 865
HpyAV CCTTC 3 cut(s) 27, 290, 856
HpyCH4III ACNGT 6 cut(s) 221, 808, 875, 911, 927, 934
HpyCH4IV ACGT 2 cut(s) 232, 490
HpyCH4V TGCA 5 cut(s) 257, 422, 554, 581, 656
HpyF3I CTNAG 2 cut(s) 77, 829
HpySE526I ACGT 2 cut(s) 232, 490
Hsp92II CATG 1 cut(s) 96
Kzo9I GATC 7 cut(s) 40, 138, 224, 330, 481, 559, 617
LmnI GCTCC 1 cut(s) 382
LweI GCATC 2 cut(s) 568, 643
MaeI CTAG 3 cut(s) 597, 642, 722
MaeII ACGT 2 cut(s) 232, 490
MaeIII GTNAC 1 cut(s) 278
MalI GATC 7 cut(s) 42, 140, 226, 332, 483, 561, 619
MboI GATC 7 cut(s) 40, 138, 224, 330, 481, 559, 617
MboII GAAGA 5 cut(s) 80, 148, 277, 726, 756
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 2 cut(s) 224, 481
MhlI GDGCHC 2 cut(s) 379, 684
MluCI AATT 7 cut(s) 165, 197, 499, 660, 729, 914, 955
Mph1103I ATGCAT 1 cut(s) 259
MroXI GAANNNNTTC 2 cut(s) 300, 799
MseI TTAA 4 cut(s) 105, 818, 854, 967
MspCI CTTAAG 1 cut(s) 817
MspR9I CCNGG 3 cut(s) 381, 522, 714
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 3 cut(s) 381, 522, 714
MvnI CGCG 1 cut(s) 294
NcoI CCATGG 1 cut(s) 92
NdeII GATC 7 cut(s) 40, 138, 224, 330, 481, 559, 617
NlaIII CATG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 278
NruI TCGCGA 1 cut(s) 294
NsiI ATGCAT 1 cut(s) 259
PceI AGGCCT 1 cut(s) 173
PdmI GAANNNNTTC 2 cut(s) 300, 799
PfeI GAWTC 3 cut(s) 47, 674, 775
PflMI CCANNNNNTGG 1 cut(s) 401
PfoI TCCNGGA 2 cut(s) 520, 712
Ppu21I YACGTR 1 cut(s) 491
Psp6I CCWGG 3 cut(s) 379, 520, 712
PspGI CCWGG 3 cut(s) 379, 520, 712
PspPI GGNCC 2 cut(s) 392, 506
PsuI RGATCY 2 cut(s) 224, 481
RruI TCGCGA 1 cut(s) 294
RsaI GTAC 3 cut(s) 71, 781, 872
RsaNI GTAC 3 cut(s) 70, 780, 871
SaqAI TTAA 4 cut(s) 105, 818, 854, 967
Sau3AI GATC 7 cut(s) 40, 138, 224, 330, 481, 559, 617
Sau96I GGNCC 2 cut(s) 392, 506
ScrFI CCNGG 3 cut(s) 381, 522, 714
SduI GDGCHC 2 cut(s) 379, 684
SfaNI GCATC 2 cut(s) 568, 643
SfcI CTRYAG 2 cut(s) 220, 633
SinI GGWCC 2 cut(s) 392, 506
SmlI CTYRAG 1 cut(s) 817
SmoI CTYRAG 1 cut(s) 817
Sse9I AATT 7 cut(s) 165, 197, 499, 660, 729, 914, 955
SseBI AGGCCT 1 cut(s) 173
SsiI CCGC 1 cut(s) 607
SspI AATATT 1 cut(s) 799
SspMI CTAG 3 cut(s) 597, 642, 722
StuI AGGCCT 1 cut(s) 173
StyD4I CCNGG 3 cut(s) 379, 520, 712
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 6 cut(s) 221, 808, 875, 911, 927, 934
TaiI ACGT 2 cut(s) 235, 493
TaqI TCGA 2 cut(s) 45, 803
TaqII GACCGA 1 cut(s) 523
TasI AATT 7 cut(s) 165, 197, 499, 660, 729, 914, 955
TatI WGTACW 2 cut(s) 69, 870
TfiI GAWTC 3 cut(s) 47, 674, 775
Tru1I TTAA 4 cut(s) 105, 818, 854, 967
Tru9I TTAA 4 cut(s) 105, 818, 854, 967
TscAI CASTG 3 cut(s) 148, 676, 914
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 17, 838
TspRI CASTG 3 cut(s) 148, 676, 914
Van91I CCANNNNNTGG 1 cut(s) 401
Vha464I CTTAAG 1 cut(s) 817
VpaK11BI GGWCC 2 cut(s) 392, 506
XagI CCTNNNNNAGG 1 cut(s) 490
XapI RAATTY 5 cut(s) 197, 499, 729, 914, 955
XmiI GTMKAC 1 cut(s) 929
XmnI GAANNNNTTC 2 cut(s) 300, 799
XspI CTAG 3 cut(s) 597, 642, 722
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.