RchiOBHm_Chr2g0143961
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
61551188 .. 61556833
5646 bp
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UTR
Exon/CDS
Intron
PRQ51400

Sequence Viewer

Length: 1425 bp
ATGGAGCCTCGAGTTGGGGGGCGGTTCCGACTCGGCCGGAAGATCGGCAGTGGATCCTTCGGAGAGATCTACTTAGGTACTAATATTCAGACGAACGAGGAGGTTGCGATTAAGCTTGAAAATGTCAAGACAAAGCATCCACAGTTGCTGTATGAGTCGAAGTTGTATAAAATACTACAGGGAGGAACTGGAATTCCAAATGTGCGATGGTTTGGCACTGAAGGAGACTACAATGTTCTTGTGATGGATTTATTGGGACCTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAACTTCCTAATGGGATTGGGTCGTCGGGCAAATCAGATTTACATCATTGACTTCGGCCTCGCTAAGAAGTATAGAGACACATCAACCCATCAGCATATTCCTTATAGAGATAATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAAGCCGAAGGGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAGCCAGATTATGCTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACAATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGACGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCATTAATTGTTGGCAGTGAATCCGAGCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCAGTTGTATCTTCAGAGCAGAATCGTACCACTTCTGGTAGAAATATTTCGACCGTAAAAAACTTAGAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTTAATAGCGACGAGAGAGTACAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

474

Amino Acids

53.16

Weight (kDa)

9.64

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 10 - 227 1.6e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 10 - 233 4.2e-16 Protein tyrosine and serine/threonine kinase
Pkinase_fungal PF17667 109 - 206 1.5e-08 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 944
AccII CGCG 1 cut(s) 837
AciI CCGC 2 cut(s) 22, 1150
AclWI GGATC 5 cut(s) 48, 61, 1019, 1097, 1168
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 5 cut(s) 192, 514, 740, 1042, 1272
AcuI CTGAAG 3 cut(s) 240, 827, 1293
AfaI GTAC 4 cut(s) 79, 614, 1324, 1416
AfiI CCNNNNNNNGG 4 cut(s) 14, 641, 944, 1035
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 6 cut(s) 119, 280, 566, 649, 880, 974
AjnI CCWGG 3 cut(s) 922, 1063, 1255
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 3 cut(s) 115, 942, 1071
AluI AGCT 3 cut(s) 115, 942, 1071
Alw21I GWGCWC 1 cut(s) 922
Alw26I GTCTC 4 cut(s) 219, 306, 465, 1379
AlwI GGATC 5 cut(s) 48, 61, 1019, 1097, 1168
AlwNI CAGNNNCTG 1 cut(s) 148
Ama87I CYCGRG 2 cut(s) 9, 587
AoxI GGCC 3 cut(s) 34, 451, 714
ApoI RAATTY 5 cut(s) 192, 514, 740, 1042, 1272
AseI ATTAAT 1 cut(s) 1202
Asp700I GAANNNNTTC 2 cut(s) 843, 1342
AspS9I GGNCC 3 cut(s) 257, 935, 1049
AsuHPI GGTGA 1 cut(s) 1287
AvaI CYCGRG 2 cut(s) 9, 587
AvaII GGWCC 3 cut(s) 257, 935, 1049
BamHI GGATCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 1227
BarI GAAGNNNNNNTAC 2 cut(s) 1261, 1293
BauI CACGAG 1 cut(s) 915
BbsI GAAGAC 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 922
BccI CCATC 4 cut(s) 201, 238, 492, 1114
BceAI ACGGC 1 cut(s) 708
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 3 cut(s) 924, 1065, 1257
BcoDI GTCTC 4 cut(s) 219, 306, 465, 1379
BfaI CTAG 4 cut(s) 261, 1140, 1185, 1265
BfmI CTRYAG 3 cut(s) 176, 763, 1176
BfrI CTTAAG 1 cut(s) 305
BglII AGATCT 2 cut(s) 66, 767
Bme1390I CCNGG 3 cut(s) 924, 1065, 1257
Bme18I GGWCC 3 cut(s) 257, 935, 1049
BmeT110I CYCGRG 2 cut(s) 9, 587
BmgT120I GGNCC 3 cut(s) 257, 935, 1049
BmiI GGNNCC 4 cut(s) 6, 26, 55, 258
BmrFI CCNGG 3 cut(s) 924, 1065, 1257
BmrI ACTGGG 1 cut(s) 531
BmsI GCATC 2 cut(s) 145, 1186
BmuI ACTGGG 1 cut(s) 531
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 287
BsaAI YACGTR 1 cut(s) 1034
BsaBI GATNNNNATC 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 1379
BsaJI CCNNGG 2 cut(s) 635, 724
BsaXI ACNNNNNCTCC 2 cut(s) 904, 934
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 641, 944, 1035
Bse1I ACTGG 6 cut(s) 193, 526, 956, 1012, 1162, 1298
Bse3DI GCAATG 1 cut(s) 1131
Bse8I GATNNNNATC 1 cut(s) 437
BseBI CCWGG 3 cut(s) 924, 1065, 1257
BseDI CCNNGG 2 cut(s) 635, 724
BseGI GGATG 3 cut(s) 136, 586, 1201
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 4 cut(s) 14, 641, 944, 1035
BseMI GCAATG 1 cut(s) 1131
BseMII CTCAG 1 cut(s) 1387
BseNI ACTGG 6 cut(s) 193, 526, 956, 1012, 1162, 1298
BseRI GAGGAG 1 cut(s) 113
BseX3I CGGCCG 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 837
Bsh1285I CGRYCG 2 cut(s) 37, 1350
BshFI GGCC 3 cut(s) 36, 453, 716
BsiEI CGRYCG 2 cut(s) 37, 1350
BsiHKAI GWGCWC 1 cut(s) 922
BsiHKCI CYCGRG 2 cut(s) 9, 587
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 2 cut(s) 270, 538
BslI CCNNNNNNNGG 4 cut(s) 14, 641, 944, 1035
BsmAI GTCTC 4 cut(s) 219, 306, 465, 1379
BsmFI GGGAC 2 cut(s) 270, 538
BsnI GGCC 3 cut(s) 36, 453, 716
Bso31I GGTCTC 1 cut(s) 1379
BsoBI CYCGRG 2 cut(s) 9, 587
Bsp1286I GDGCHC 2 cut(s) 922, 1227
Bsp19I CCATGG 1 cut(s) 635
Bsp68I TCGCGA 1 cut(s) 837
BspACI CCGC 2 cut(s) 22, 1150
BspANI GGCC 3 cut(s) 36, 453, 716
BspCNI CTCAG 1 cut(s) 1386
BspFNI CGCG 1 cut(s) 837
BspLI GGNNCC 4 cut(s) 6, 26, 55, 258
BspPI GGATC 5 cut(s) 48, 61, 1019, 1097, 1168
BspTI CTTAAG 1 cut(s) 305
BspTNI GGTCTC 1 cut(s) 1379
BsrDI GCAATG 1 cut(s) 1131
BsrI ACTGG 6 cut(s) 193, 526, 956, 1012, 1162, 1298
BssECI CCNNGG 2 cut(s) 635, 724
BssSI CACGAG 1 cut(s) 915
BssT1I CCWWGG 1 cut(s) 635
Bst2BI CACGAG 1 cut(s) 915
Bst2UI CCWGG 3 cut(s) 924, 1065, 1257
Bst4CI ACNGT 5 cut(s) 144, 313, 764, 1351, 1419
Bst6I CTCTTC 1 cut(s) 803
BstAFI CTTAAG 1 cut(s) 305
BstAPI GCANNNNNTGC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 1034
BstC8I GCNNGC 2 cut(s) 324, 541
BstDEI CTNAG 5 cut(s) 73, 459, 620, 1360, 1373
BstDSI CCRYGG 2 cut(s) 635, 724
BstENI CCTNNNNNAGG 1 cut(s) 1033
BstF5I GGATG 3 cut(s) 136, 586, 1201
BstFNI CGCG 1 cut(s) 837
BstMAI GTCTC 4 cut(s) 219, 306, 465, 1379
BstMCI CGRYCG 2 cut(s) 37, 1350
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 3 cut(s) 924, 1065, 1257
BstSCI CCNGG 3 cut(s) 922, 1063, 1255
BstSFI CTRYAG 3 cut(s) 176, 763, 1176
BstUI CGCG 1 cut(s) 837
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 4 cut(s) 53, 66, 767, 1024
BstYI RGATCY 4 cut(s) 53, 66, 767, 1024
BstZI CGGCCG 1 cut(s) 34
BsuRI GGCC 3 cut(s) 36, 453, 716
BtgI CCRYGG 2 cut(s) 635, 724
BtgZI GCGATG 1 cut(s) 220
BtsCI GGATG 3 cut(s) 136, 586, 1201
BtsI GCAGTG 2 cut(s) 55, 1219
BtsIMutI CAGTG 4 cut(s) 55, 216, 691, 1219
BtuMI TCGCGA 1 cut(s) 837
Cac8I GCNNGC 2 cut(s) 324, 541
CaiI CAGNNNCTG 1 cut(s) 148
Cfr13I GGNCC 3 cut(s) 257, 935, 1049
CseI GACGC 1 cut(s) 1130
Csp6I GTAC 4 cut(s) 78, 613, 1323, 1415
CspCI CAANNNNNGTGG 2 cut(s) 724, 759
CviAII CATG 3 cut(s) 319, 544, 636
CviQI GTAC 4 cut(s) 78, 613, 1323, 1415
DdeI CTNAG 5 cut(s) 73, 459, 620, 1360, 1373
EaeI YGGCCR 1 cut(s) 34
EagI CGGCCG 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
EclXI CGGCCG 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 635
Eco147I AGGCCT 1 cut(s) 716
Eco24I GRGCYC 1 cut(s) 1227
Eco31I GGTCTC 1 cut(s) 1379
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 3 cut(s) 257, 935, 1049
Eco52I CGGCCG 1 cut(s) 34
Eco57I CTGAAG 3 cut(s) 240, 827, 1293
Eco88I CYCGRG 2 cut(s) 9, 587
EcoNI CCTNNNNNAGG 1 cut(s) 1033
EcoO109I RGGNCCY 1 cut(s) 257
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 3 cut(s) 922, 1063, 1255
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 635
EcoT22I ATGCAT 1 cut(s) 1201
EcoT38I GRGCYC 1 cut(s) 1227
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 3 cut(s) 322, 547, 639
FaqI GGGAC 2 cut(s) 270, 538
FatI CATG 3 cut(s) 318, 543, 635
FokI GGATG 3 cut(s) 123, 593, 1208
FriOI GRGCYC 1 cut(s) 1227
FspBI CTAG 4 cut(s) 261, 1140, 1185, 1265
GsuI CTGGAG 1 cut(s) 939
HaeIII GGCC 3 cut(s) 36, 453, 716
HapII CCGG 1 cut(s) 37
HgaI GACGC 1 cut(s) 1130
Hin1II CATG 3 cut(s) 322, 547, 639
HincII GTYRAC 2 cut(s) 702, 1155
HindII GTYRAC 2 cut(s) 702, 1155
HindIII AAGCTT 2 cut(s) 113, 1069
HinfI GANTC 6 cut(s) 30, 155, 590, 1217, 1318, 1364
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 1287
Hpy166II GTNNAC 4 cut(s) 702, 1155, 1295, 1368
Hpy188I TCNGA 8 cut(s) 29, 62, 90, 432, 807, 1222, 1312, 1376
Hpy8I GTNNAC 4 cut(s) 702, 1155, 1295, 1368
Hpy99I CGWCG 2 cut(s) 423, 1409
HpyAV CCTTC 6 cut(s) 67, 215, 570, 643, 833, 1400
HpyCH4III ACNGT 5 cut(s) 144, 313, 764, 1351, 1419
HpyCH4IV ACGT 2 cut(s) 775, 1033
HpyCH4V TGCA 6 cut(s) 288, 326, 539, 965, 1097, 1199
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 5 cut(s) 73, 459, 620, 1360, 1373
HpySE526I ACGT 2 cut(s) 775, 1033
Hsp92II CATG 3 cut(s) 322, 547, 639
LmnI GCTCC 2 cut(s) 4, 925
LweI GCATC 2 cut(s) 145, 1186
MaeI CTAG 4 cut(s) 261, 1140, 1185, 1265
MaeII ACGT 2 cut(s) 775, 1033
MaeIII GTNAC 2 cut(s) 591, 821
MboII GAAGA 6 cut(s) 52, 623, 691, 820, 1269, 1299
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 4 cut(s) 53, 66, 767, 1024
MhlI GDGCHC 2 cut(s) 922, 1227
MluCI AATT 7 cut(s) 192, 514, 708, 740, 1042, 1203, 1272
MlyI GAGTC 4 cut(s) 24, 164, 599, 1373
MmeI TCCRAC 1 cut(s) 52
Mph1103I ATGCAT 1 cut(s) 1201
MroXI GAANNNNTTC 2 cut(s) 843, 1342
MseI TTAA 4 cut(s) 111, 306, 1202, 1398
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 3 cut(s) 924, 1065, 1257
MunI CAATTG 1 cut(s) 708
MvaI CCWGG 3 cut(s) 924, 1065, 1257
MvnI CGCG 1 cut(s) 837
MwoI GCNNNNNNNGC 1 cut(s) 536
NcoI CCATGG 1 cut(s) 635
NlaIII CATG 3 cut(s) 322, 547, 639
NlaIV GGNNCC 4 cut(s) 6, 26, 55, 258
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 2 cut(s) 591, 821
NruI TCGCGA 1 cut(s) 837
NsiI ATGCAT 1 cut(s) 1201
PaeR7I CTCGAG 2 cut(s) 9, 587
PceI AGGCCT 1 cut(s) 716
PdmI GAANNNNTTC 2 cut(s) 843, 1342
PfeI GAWTC 2 cut(s) 1217, 1318
PflFI GACNNNGTC 1 cut(s) 261
PflMI CCANNNNNTGG 1 cut(s) 944
PfoI TCCNGGA 2 cut(s) 1063, 1255
PleI GAGTC 4 cut(s) 24, 163, 598, 1372
PpsI GAGTC 4 cut(s) 24, 163, 598, 1372
Ppu21I YACGTR 1 cut(s) 1034
PpuMI RGGWCCY 1 cut(s) 257
PshBI ATTAAT 1 cut(s) 1202
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 3 cut(s) 922, 1063, 1255
PspGI CCWGG 3 cut(s) 922, 1063, 1255
PspN4I GGNNCC 4 cut(s) 6, 26, 55, 258
PspPI GGNCC 3 cut(s) 257, 935, 1049
PspPPI RGGWCCY 1 cut(s) 257
PspXI VCTCGAGB 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 4 cut(s) 53, 66, 767, 1024
PsyI GACNNNGTC 1 cut(s) 261
RruI TCGCGA 1 cut(s) 837
RsaI GTAC 4 cut(s) 79, 614, 1324, 1416
RsaNI GTAC 4 cut(s) 78, 613, 1323, 1415
SaqAI TTAA 4 cut(s) 111, 306, 1202, 1398
Sau96I GGNCC 3 cut(s) 257, 935, 1049
SchI GAGTC 4 cut(s) 24, 164, 599, 1373
ScrFI CCNGG 3 cut(s) 924, 1065, 1257
SduI GDGCHC 2 cut(s) 922, 1227
SfaNI GCATC 2 cut(s) 145, 1186
SfcI CTRYAG 3 cut(s) 176, 763, 1176
Sfr274I CTCGAG 2 cut(s) 9, 587
SinI GGWCC 3 cut(s) 257, 935, 1049
SlaI CTCGAG 2 cut(s) 9, 587
SmlI CTYRAG 4 cut(s) 9, 266, 305, 587
SmoI CTYRAG 4 cut(s) 9, 266, 305, 587
Sse9I AATT 7 cut(s) 192, 514, 708, 740, 1042, 1203, 1272
SseBI AGGCCT 1 cut(s) 716
SsiI CCGC 2 cut(s) 22, 1150
SspI AATATT 2 cut(s) 85, 1342
SspMI CTAG 4 cut(s) 261, 1140, 1185, 1265
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 3 cut(s) 922, 1063, 1255
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 5 cut(s) 144, 313, 764, 1351, 1419
TaiI ACGT 2 cut(s) 778, 1036
TaqI TCGA 5 cut(s) 10, 158, 343, 588, 1346
TaqII GACCGA 1 cut(s) 1066
TasI AATT 7 cut(s) 192, 514, 708, 740, 1042, 1203, 1272
TatI WGTACW 2 cut(s) 612, 1414
TfiI GAWTC 2 cut(s) 1217, 1318
Tru1I TTAA 4 cut(s) 111, 306, 1202, 1398
Tru9I TTAA 4 cut(s) 111, 306, 1202, 1398
TscAI CASTG 4 cut(s) 55, 223, 691, 1219
TseFI GTSAC 2 cut(s) 591, 821
Tsp45I GTSAC 2 cut(s) 591, 821
TspDTI ATGAA 3 cut(s) 347, 560, 1382
TspRI CASTG 4 cut(s) 55, 223, 691, 1219
Tth111I GACNNNGTC 1 cut(s) 261
Van91I CCANNNNNTGG 1 cut(s) 944
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 3 cut(s) 257, 935, 1049
VspI ATTAAT 1 cut(s) 1202
XagI CCTNNNNNAGG 1 cut(s) 1033
XapI RAATTY 5 cut(s) 192, 514, 740, 1042, 1272
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XhoI CTCGAG 2 cut(s) 9, 587
XmnI GAANNNNTTC 2 cut(s) 843, 1342
XspI CTAG 4 cut(s) 261, 1140, 1185, 1265
Zsp2I ATGCAT 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.