Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003081

Physical Location & Seq

Genomic Coordinates Reverse (-)

23376390 .. 23377143

Gene Structure 754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACATGGAGTTGCTACATTTTCTTCTTGCTGATTTGTGCTTCTCTTTCTCAGGAAAATGTCAAGACAAAGCATCCACAGCTGCTGTATGAGTCGAAGTTGTATAAAATACTACAGGGAGGAACTGGAATTCCAAATGTGCGATGGTTTGGCACTGAAGGAGACTACAATGTTCTTGTGATGGATTTATTGGGACCTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAACTTCCTAATGGGATTGGGTCGTCGGGCAAATCAGATTTACATCATTGACTTCGGCCTCGCTAAGAAGTATAGAGACACATCAACTCATCAGCATATTCCTTATAGGTTGGTTGCTTTGATTGCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

154

Amino Acids

17.85

Weight (kDa)

9.17

Isoelectric Point (pI)

21.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 141	3e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	44 - 141	1.4e-08	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	44 - 139	6.7e-06	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72710
fragaria_vesca	FvH4_6g34010 FvH4_6g34010 FvH4_6g34010
malus_domestica	MD09G1190100.v1.1 MD17G1173000.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.3G046000_v2.0.a1
pyrus_communis	pycom09g10660 pycom17g17150
rosa_chinensis	RchiOBHm_Chr2g0143801 RchiOBHm_Chr2g0143831 RchiOBHm_Chr2g0143921 RchiOBHm_Chr2g0143961 RchiOBHm_Chr2g0144121 RchiOBHm_Chr2g0144141 RchiOBHm_Chr2g0144191 RchiOBHm_Chr2g0144221 RchiOBHm_Chr2g0144271
rosa_laevigata	RLG00000020070
rosa_multiflora	Rmu_sc0002354.1_g000001 Rmu_sc0012360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101420
rosa_rugosa	Rorug02G0385600 Rorug02G0385700
rosa_samantha	Rh2AG438100 Rh2BG446500 Rh2BG448300 Rh2CG424700 Rh2DG455900 Rh2DG456800 Rh2DG457800
rosa_wichuraiana	Rw2G033290 Rw2G033320 Rw2G035780 Rw2G035830 Rw2G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	177
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	217
AloI	GAACNNNNNNTCC	2 cut(s)	115, 147
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw26I	GTCTC	3 cut(s)	156, 243, 402
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	138, 175
BcoDI	GTCTC	3 cut(s)	156, 243, 402
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	113
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	374
BseGI	GGATG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	207
BsmAI	GTCTC	3 cut(s)	156, 243, 402
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	195
BspTI	CTTAAG	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	51, 396
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	3 cut(s)	156, 243, 402
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 455
BstSFI	CTRYAG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	390
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	194
CviAII	CATG	2 cut(s)	6, 256
CviJI	RGCY	2 cut(s)	82, 390
CviKI_1	RGCY	2 cut(s)	82, 390
DdeI	CTNAG	2 cut(s)	51, 396
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	322
FaeI	CATG	2 cut(s)	9, 259
FaiI	YATR	7 cut(s)	7, 90, 105, 257, 405, 429, 438
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	2 cut(s)	5, 255
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	9, 259
HinfI	GANTC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	4 cut(s)	53, 64, 203, 317
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	225, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 455
HpyF3I	CTNAG	2 cut(s)	51, 396
Hsp92II	CATG	2 cut(s)	9, 259
Kzo9I	GATC	1 cut(s)	265
LpnPI	CCDG	4 cut(s)	38, 101, 111, 342
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	198
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	16
MluCI	AATT	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	113, 199, 401
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	82
MspCI	CTTAAG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	79, 455
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	9, 259
NlaIV	GGNNCC	1 cut(s)	195
PflFI	GACNNNGTC	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	84
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	194
PspPPI	RGGWCCY	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	85
PsyI	GACNNNGTC	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	101
SetI	ASST	3 cut(s)	84, 199, 443
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	203, 242
SmoI	CTYRAG	2 cut(s)	203, 242
Sse9I	AATT	1 cut(s)	129
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	95, 280
TasI	AATT	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.