Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003081

Physical Location & Seq

Genomic Coordinates Forward (+)

61803449 .. 61810311

Gene Structure 6863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51417

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCTAAAGTACCAGCATTAGATTCACATGGACTTTCAAGGACAGATAATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAGGCCGAAGCGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAACCAGATTATGGTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGATGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAACGATCCATCTGTGTCTAAAGACGCAATGTTTTTTGCGGTCAACTGGATCATCAAGGGGGCTGTAGTTTATAGCAGTTGGGATGCAGTAATTGTTGGCAGTGAATCCGAGCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCAGTTGTATCTTCAGAGCAGAATCGTACCACTTCTGGTAGAAATATTTCGACCGTAAAAAACTTAGAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTAAATAGCGACGAGAGAGTACAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

316

Amino Acids

35.0

Weight (kDa)

9.34

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72710
fragaria_vesca	FvH4_6g34010 FvH4_6g34010 FvH4_6g34010
malus_domestica	MD09G1190100.v1.1 MD17G1173000.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.3G046000_v2.0.a1
pyrus_communis	pycom09g10660 pycom17g17150
rosa_chinensis	RchiOBHm_Chr2g0143801 RchiOBHm_Chr2g0143831 RchiOBHm_Chr2g0143921 RchiOBHm_Chr2g0143961 RchiOBHm_Chr2g0144121 RchiOBHm_Chr2g0144141 RchiOBHm_Chr2g0144191 RchiOBHm_Chr2g0144221 RchiOBHm_Chr2g0144271
rosa_laevigata	RLG00000020070
rosa_multiflora	Rmu_sc0002354.1_g000001 Rmu_sc0012360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101420
rosa_rugosa	Rorug02G0385600 Rorug02G0385700
rosa_samantha	Rh2AG438100 Rh2BG446500 Rh2BG448300 Rh2CG424700 Rh2DG455900 Rh2DG456800 Rh2DG457800
rosa_wichuraiana	Rw2G033290 Rw2G033320 Rw2G035780 Rw2G035830 Rw2G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	338, 485
AccII	CGCG	1 cut(s)	378
AciI	CCGC	1 cut(s)	677
AclWI	GGATC	3 cut(s)	560, 638, 695
AcsI	RAATTY	4 cut(s)	55, 281, 583, 798
AcuI	CTGAAG	2 cut(s)	368, 819
AfaI	GTAC	4 cut(s)	12, 155, 850, 942
AfiI	CCNNNNNNNGG	4 cut(s)	182, 338, 485, 576
AgsI	TTSAA	5 cut(s)	39, 107, 190, 421, 515
AjnI	CCWGG	3 cut(s)	463, 604, 781
AluBI	AGCT	2 cut(s)	483, 612
AluI	AGCT	2 cut(s)	483, 612
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	1 cut(s)	905
AlwI	GGATC	3 cut(s)	560, 638, 695
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	112, 255
ApoI	RAATTY	4 cut(s)	55, 281, 583, 798
Asp700I	GAANNNNTTC	2 cut(s)	384, 868
AspS9I	GGNCC	2 cut(s)	476, 590
AsuHPI	GGTGA	1 cut(s)	813
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	476, 590
BanII	GRGCYC	1 cut(s)	753
BarI	GAAGNNNNNNTAC	2 cut(s)	787, 819
BauI	CACGAG	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	463
BccI	CCATC	1 cut(s)	655
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	3 cut(s)	465, 606, 783
BcoDI	GTCTC	1 cut(s)	905
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	2 cut(s)	304, 702
BglII	AGATCT	1 cut(s)	308
Bme1390I	CCNGG	3 cut(s)	465, 606, 783
Bme18I	GGWCC	2 cut(s)	476, 590
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	476, 590
BmrFI	CCNGG	3 cut(s)	465, 606, 783
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	712
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	480
BsaAI	YACGTR	1 cut(s)	575
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	2 cut(s)	176, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 338, 485, 576
Bse1I	ACTGG	5 cut(s)	67, 497, 553, 689, 824
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	3 cut(s)	465, 606, 783
BseDI	CCNNGG	2 cut(s)	176, 265
BseGI	GGATG	2 cut(s)	417, 727
BseLI	CCNNNNNNNGG	4 cut(s)	182, 338, 485, 576
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	1 cut(s)	913
BseNI	ACTGG	5 cut(s)	67, 497, 553, 689, 824
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	876
BshFI	GGCC	2 cut(s)	114, 257
BsiEI	CGRYCG	1 cut(s)	876
BsiHKAI	GWGCWC	1 cut(s)	463
BsiHKCI	CYCGRG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	4 cut(s)	182, 338, 485, 576
BsmAI	GTCTC	1 cut(s)	905
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	114, 257
Bso31I	GGTCTC	1 cut(s)	905
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	463, 753
Bsp143I	GATC	7 cut(s)	124, 222, 308, 414, 565, 643, 687
Bsp19I	CCATGG	1 cut(s)	176
Bsp68I	TCGCGA	1 cut(s)	378
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	2 cut(s)	114, 257
BspCNI	CTCAG	1 cut(s)	912
BspFNI	CGCG	1 cut(s)	378
BspPI	GGATC	3 cut(s)	560, 638, 695
BspTNI	GGTCTC	1 cut(s)	905
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	5 cut(s)	67, 497, 553, 689, 824
BssECI	CCNNGG	2 cut(s)	176, 265
BssMI	GATC	7 cut(s)	124, 222, 308, 414, 565, 643, 687
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	3 cut(s)	465, 606, 783
Bst4CI	ACNGT	3 cut(s)	305, 877, 945
Bst6I	CTCTTC	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	3 cut(s)	161, 886, 899
BstDSI	CCRYGG	2 cut(s)	176, 265
BstENI	CCTNNNNNAGG	1 cut(s)	574
BstF5I	GGATG	2 cut(s)	417, 727
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	7 cut(s)	127, 225, 311, 417, 568, 646, 690
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	7 cut(s)	124, 222, 308, 414, 565, 643, 687
BstMCI	CGRYCG	1 cut(s)	876
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	3 cut(s)	465, 606, 783
BstSCI	CCNGG	3 cut(s)	463, 604, 781
BstSFI	CTRYAG	2 cut(s)	304, 702
BstUI	CGCG	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	2 cut(s)	308, 565
BstYI	RGATCY	2 cut(s)	308, 565
BsuRI	GGCC	2 cut(s)	114, 257
BtgI	CCRYGG	2 cut(s)	176, 265
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	417, 727
BtsI	GCAGTG	1 cut(s)	745
BtsIMutI	CAGTG	2 cut(s)	232, 745
BtuMI	TCGCGA	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	476, 590
CseI	GACGC	1 cut(s)	671
Csp6I	GTAC	4 cut(s)	11, 154, 849, 941
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	3 cut(s)	29, 85, 177
CviJI	RGCY	7 cut(s)	114, 194, 257, 483, 612, 701, 751
CviKI_1	RGCY	7 cut(s)	114, 194, 257, 483, 612, 701, 751
CviQI	GTAC	4 cut(s)	11, 154, 849, 941
DdeI	CTNAG	3 cut(s)	161, 886, 899
DpnI	GATC	7 cut(s)	126, 224, 310, 416, 567, 645, 689
DpnII	GATC	7 cut(s)	124, 222, 308, 414, 565, 643, 687
DraI	TTTAAA	1 cut(s)	924
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	753
Eco31I	GGTCTC	1 cut(s)	905
Eco47I	GGWCC	2 cut(s)	476, 590
Eco57I	CTGAAG	2 cut(s)	368, 819
Eco88I	CYCGRG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	574
EcoRII	CCWGG	3 cut(s)	463, 604, 781
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	3 cut(s)	32, 88, 180
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	3 cut(s)	28, 84, 176
FokI	GGATG	2 cut(s)	424, 734
FriOI	GRGCYC	1 cut(s)	753
FspBI	CTAG	1 cut(s)	791
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	2 cut(s)	114, 257
HgaI	GACGC	1 cut(s)	671
Hin1II	CATG	3 cut(s)	32, 88, 180
HincII	GTYRAC	2 cut(s)	243, 682
HindII	GTYRAC	2 cut(s)	243, 682
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	5 cut(s)	23, 131, 743, 844, 890
HphI	GGTGA	1 cut(s)	813
Hpy166II	GTNNAC	4 cut(s)	243, 682, 821, 894
Hpy188I	TCNGA	4 cut(s)	348, 748, 838, 902
Hpy188III	TCNNGA	6 cut(s)	128, 362, 377, 418, 486, 588
Hpy8I	GTNNAC	4 cut(s)	243, 682, 821, 894
Hpy99I	CGWCG	1 cut(s)	935
HpyAV	CCTTC	3 cut(s)	184, 374, 926
HpyCH4III	ACNGT	3 cut(s)	305, 877, 945
HpyCH4IV	ACGT	2 cut(s)	316, 574
HpyCH4V	TGCA	4 cut(s)	80, 506, 638, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	3 cut(s)	161, 886, 899
HpySE526I	ACGT	2 cut(s)	316, 574
Hsp92II	CATG	3 cut(s)	32, 88, 180
Kzo9I	GATC	7 cut(s)	124, 222, 308, 414, 565, 643, 687
LmnI	GCTCC	1 cut(s)	466
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	2 cut(s)	316, 574
MaeIII	GTNAC	2 cut(s)	132, 362
MalI	GATC	7 cut(s)	126, 224, 310, 416, 567, 645, 689
MboI	GATC	7 cut(s)	124, 222, 308, 414, 565, 643, 687
MboII	GAAGA	5 cut(s)	164, 232, 361, 795, 825
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	2 cut(s)	308, 565
MhlI	GDGCHC	2 cut(s)	463, 753
MluCI	AATT	6 cut(s)	55, 249, 281, 583, 729, 798
MlyI	GAGTC	2 cut(s)	140, 899
MroXI	GAANNNNTTC	2 cut(s)	384, 868
MseI	TTAA	1 cut(s)	923
MspR9I	CCNGG	3 cut(s)	465, 606, 783
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	3 cut(s)	465, 606, 783
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	176
NdeII	GATC	7 cut(s)	124, 222, 308, 414, 565, 643, 687
NlaIII	CATG	3 cut(s)	32, 88, 180
NmuCI	GTSAC	2 cut(s)	132, 362
NruI	TCGCGA	1 cut(s)	378
PaeR7I	CTCGAG	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	257
PdmI	GAANNNNTTC	2 cut(s)	384, 868
PfeI	GAWTC	3 cut(s)	23, 743, 844
PflMI	CCANNNNNTGG	2 cut(s)	338, 485
PfoI	TCCNGGA	2 cut(s)	604, 781
PleI	GAGTC	2 cut(s)	139, 898
PpsI	GAGTC	2 cut(s)	139, 898
Ppu21I	YACGTR	1 cut(s)	575
Psp6I	CCWGG	3 cut(s)	463, 604, 781
PspGI	CCWGG	3 cut(s)	463, 604, 781
PspPI	GGNCC	2 cut(s)	476, 590
PsuI	RGATCY	2 cut(s)	308, 565
RruI	TCGCGA	1 cut(s)	378
RsaI	GTAC	4 cut(s)	12, 155, 850, 942
RsaNI	GTAC	4 cut(s)	11, 154, 849, 941
SaqAI	TTAA	1 cut(s)	923
Sau3AI	GATC	7 cut(s)	124, 222, 308, 414, 565, 643, 687
Sau96I	GGNCC	2 cut(s)	476, 590
SchI	GAGTC	2 cut(s)	140, 899
ScrFI	CCNGG	3 cut(s)	465, 606, 783
SduI	GDGCHC	2 cut(s)	463, 753
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	2 cut(s)	304, 702
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	2 cut(s)	476, 590
SlaI	CTCGAG	1 cut(s)	128
SmiI	ATTTAAAT	1 cut(s)	924
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	6 cut(s)	55, 249, 281, 583, 729, 798
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	677
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	1 cut(s)	791
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	463, 604, 781
StyI	CCWWGG	1 cut(s)	176
SwaI	ATTTAAAT	1 cut(s)	924
TaaI	ACNGT	3 cut(s)	305, 877, 945
TaiI	ACGT	2 cut(s)	319, 577
TaqI	TCGA	2 cut(s)	129, 872
TaqII	GACCGA	1 cut(s)	607
TasI	AATT	6 cut(s)	55, 249, 281, 583, 729, 798
TatI	WGTACW	2 cut(s)	153, 940
TfiI	GAWTC	3 cut(s)	23, 743, 844
Tru1I	TTAA	1 cut(s)	923
Tru9I	TTAA	1 cut(s)	923
TscAI	CASTG	2 cut(s)	232, 745
TseFI	GTSAC	2 cut(s)	132, 362
Tsp45I	GTSAC	2 cut(s)	132, 362
TspDTI	ATGAA	2 cut(s)	101, 908
TspRI	CASTG	2 cut(s)	232, 745
Van91I	CCANNNNNTGG	2 cut(s)	338, 485
VpaK11BI	GGWCC	2 cut(s)	476, 590
XagI	CCTNNNNNAGG	1 cut(s)	574
XapI	RAATTY	4 cut(s)	55, 281, 583, 798
XhoI	CTCGAG	1 cut(s)	128
XmnI	GAANNNNTTC	2 cut(s)	384, 868
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.