Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003081

Physical Location & Seq

Genomic Coordinates Forward (+)

61733000 .. 61737636

Gene Structure 4637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTCAAGACAATGCATCCACAGTTGCTGTATGAGTCGAACTGGAATTCCAAATGTGCGATGGTTTGGCACCGAAGGAGACTACAATGTTCTTGTGATGGATTTATTGGGACCTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAACTTCCTAATGGGATTGGGTCGTCGGGCAAATCAGATTTACATCATTGACTTCGGCCTCGCTAAGAAGTATAGAGACACATCAACCCATCAGCATATTCCTTATAGAGATGATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAAGCCGAAGGGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAACCAGATTATGCTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGATGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGCCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGACGCAATGTTATCAAGTTCTGGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCAGTAATTGTTGGCAGTGAATCCGAGCCCTCTCGCCCTCAAACCAGAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGTTCACCTGTTGTATCTTCAGAGCAGAATCGTACCACTTCTGGTAGAAATATTTCGACAGTAAAAAACTTAGAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTTAATAGCGACGAGAGAGTACAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

424

Amino Acids

47.63

Weight (kDa)

9.51

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 178	1.2e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	27 - 216	1.2e-08	Protein tyrosine and serine/threonine kinase
Pkinase_fungal	PF17667	61 - 157	1.3e-08	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72710
fragaria_vesca	FvH4_6g34010 FvH4_6g34010 FvH4_6g34010
malus_domestica	MD09G1190100.v1.1 MD17G1173000.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.3G046000_v2.0.a1
pyrus_communis	pycom09g10660 pycom17g17150
rosa_chinensis	RchiOBHm_Chr2g0143801 RchiOBHm_Chr2g0143831 RchiOBHm_Chr2g0143921 RchiOBHm_Chr2g0143961 RchiOBHm_Chr2g0144121 RchiOBHm_Chr2g0144141 RchiOBHm_Chr2g0144191 RchiOBHm_Chr2g0144221 RchiOBHm_Chr2g0144271
rosa_laevigata	RLG00000020070
rosa_multiflora	Rmu_sc0002354.1_g000001 Rmu_sc0012360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101420
rosa_rugosa	Rorug02G0385600 Rorug02G0385700
rosa_samantha	Rh2AG438100 Rh2BG446500 Rh2BG448300 Rh2CG424700 Rh2DG455900 Rh2DG456800 Rh2DG457800
rosa_wichuraiana	Rw2G033290 Rw2G033320 Rw2G035780 Rw2G035830 Rw2G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccII	CGCG	1 cut(s)	690
AciI	CCGC	1 cut(s)	1003
AclWI	GGATC	3 cut(s)	872, 950, 1021
AcoI	YGGCCR	1 cut(s)	866
AcsI	RAATTY	5 cut(s)	45, 367, 593, 895, 1125
AcuI	CTGAAG	2 cut(s)	680, 1143
AfaI	GTAC	3 cut(s)	467, 1174, 1266
AfiI	CCNNNNNNNGG	3 cut(s)	494, 797, 888
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	5 cut(s)	133, 419, 502, 733, 827
AjnI	CCWGG	3 cut(s)	775, 916, 1108
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
AluBI	AGCT	2 cut(s)	795, 924
AluI	AGCT	2 cut(s)	795, 924
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	4 cut(s)	72, 159, 318, 1229
AlwI	GGATC	3 cut(s)	872, 950, 1021
AlwNI	CAGNNNCTG	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	3 cut(s)	304, 567, 866
ApoI	RAATTY	5 cut(s)	45, 367, 593, 895, 1125
Asp700I	GAANNNNTTC	2 cut(s)	696, 1192
AspS9I	GGNCC	3 cut(s)	110, 788, 902
AsuHPI	GGTGA	1 cut(s)	1137
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	3 cut(s)	110, 788, 902
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	1080
BarI	GAAGNNNNNNTAC	2 cut(s)	1114, 1146
BauI	CACGAG	1 cut(s)	768
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	775
BccI	CCATC	4 cut(s)	54, 91, 345, 967
BceAI	ACGGC	2 cut(s)	561, 853
BciT130I	CCWGG	3 cut(s)	777, 918, 1110
BcoDI	GTCTC	4 cut(s)	72, 159, 318, 1229
BfaI	CTAG	3 cut(s)	114, 1038, 1118
BfmI	CTRYAG	2 cut(s)	616, 1029
BfrI	CTTAAG	1 cut(s)	158
BglII	AGATCT	1 cut(s)	620
Bme1390I	CCNGG	3 cut(s)	777, 918, 1110
Bme18I	GGWCC	3 cut(s)	110, 788, 902
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	3 cut(s)	110, 788, 902
BmiI	GGNNCC	2 cut(s)	70, 111
BmrFI	CCNGG	3 cut(s)	777, 918, 1110
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	24, 1039
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	140
BsaAI	YACGTR	1 cut(s)	887
BsaBI	GATNNNNATC	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	1229
BsaJI	CCNNGG	2 cut(s)	488, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	757, 787
Bsc4I	CCNNNNNNNGG	3 cut(s)	494, 797, 888
Bse1I	ACTGG	5 cut(s)	46, 379, 809, 865, 1015
Bse3DI	GCAATG	1 cut(s)	984
Bse8I	GATNNNNATC	1 cut(s)	290
BseBI	CCWGG	3 cut(s)	777, 918, 1110
BseDI	CCNNGG	2 cut(s)	488, 577
BseGI	GGATG	4 cut(s)	15, 439, 729, 1054
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	3 cut(s)	494, 797, 888
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	1 cut(s)	1237
BseNI	ACTGG	5 cut(s)	46, 379, 809, 865, 1015
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	3 cut(s)	306, 569, 868
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	775
BsiHKCI	CYCGRG	1 cut(s)	440
BslFI	GGGAC	2 cut(s)	123, 391
BslI	CCNNNNNNNGG	3 cut(s)	494, 797, 888
BsmAI	GTCTC	4 cut(s)	72, 159, 318, 1229
BsmFI	GGGAC	2 cut(s)	123, 391
BsnI	GGCC	3 cut(s)	306, 569, 868
Bso31I	GGTCTC	1 cut(s)	1229
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	775, 1080
Bsp143I	GATC	8 cut(s)	181, 436, 534, 620, 726, 877, 955, 1013
Bsp19I	CCATGG	1 cut(s)	488
Bsp68I	TCGCGA	1 cut(s)	690
BspACI	CCGC	1 cut(s)	1003
BspANI	GGCC	3 cut(s)	306, 569, 868
BspCNI	CTCAG	1 cut(s)	1236
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	2 cut(s)	70, 111
BspPI	GGATC	3 cut(s)	872, 950, 1021
BspT107I	GGYRCC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	1229
BsrDI	GCAATG	1 cut(s)	984
BsrI	ACTGG	5 cut(s)	46, 379, 809, 865, 1015
BssECI	CCNNGG	2 cut(s)	488, 577
BssMI	GATC	8 cut(s)	181, 436, 534, 620, 726, 877, 955, 1013
BssSI	CACGAG	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	488
Bst2BI	CACGAG	1 cut(s)	768
Bst2UI	CCWGG	3 cut(s)	777, 918, 1110
Bst4CI	ACNGT	5 cut(s)	23, 166, 617, 1201, 1269
Bst6I	CTCTTC	1 cut(s)	656
BstAFI	CTTAAG	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstBAI	YACGTR	1 cut(s)	887
BstC8I	GCNNGC	2 cut(s)	177, 394
BstDEI	CTNAG	4 cut(s)	312, 473, 1210, 1223
BstDSI	CCRYGG	2 cut(s)	488, 577
BstENI	CCTNNNNNAGG	1 cut(s)	886
BstF5I	GGATG	4 cut(s)	15, 439, 729, 1054
BstFNI	CGCG	1 cut(s)	690
BstKTI	GATC	8 cut(s)	184, 439, 537, 623, 729, 880, 958, 1016
BstMAI	GTCTC	4 cut(s)	72, 159, 318, 1229
BstMBI	GATC	8 cut(s)	181, 436, 534, 620, 726, 877, 955, 1013
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	3 cut(s)	777, 918, 1110
BstSCI	CCNGG	3 cut(s)	775, 916, 1108
BstSFI	CTRYAG	2 cut(s)	616, 1029
BstUI	CGCG	1 cut(s)	690
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	2 cut(s)	620, 877
BstYI	RGATCY	2 cut(s)	620, 877
BsuRI	GGCC	3 cut(s)	306, 569, 868
BtgI	CCRYGG	2 cut(s)	488, 577
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	4 cut(s)	15, 439, 729, 1054
BtsI	GCAGTG	1 cut(s)	1072
BtsIMutI	CAGTG	2 cut(s)	544, 1072
BtuMI	TCGCGA	1 cut(s)	690
Cac8I	GCNNGC	2 cut(s)	177, 394
CaiI	CAGNNNCTG	1 cut(s)	27
Cfr13I	GGNCC	3 cut(s)	110, 788, 902
CseI	GACGC	1 cut(s)	983
Csp6I	GTAC	3 cut(s)	466, 1173, 1265
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	3 cut(s)	172, 397, 489
CviJI	RGCY	9 cut(s)	306, 426, 506, 569, 795, 868, 924, 1028, 1078
CviKI_1	RGCY	9 cut(s)	306, 426, 506, 569, 795, 868, 924, 1028, 1078
CviQI	GTAC	3 cut(s)	466, 1173, 1265
DdeI	CTNAG	4 cut(s)	312, 473, 1210, 1223
DpnI	GATC	8 cut(s)	183, 438, 536, 622, 728, 879, 957, 1015
DpnII	GATC	8 cut(s)	181, 436, 534, 620, 726, 877, 955, 1013
EaeI	YGGCCR	1 cut(s)	866
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
Eco130I	CCWWGG	1 cut(s)	488
Eco147I	AGGCCT	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	1080
Eco31I	GGTCTC	1 cut(s)	1229
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	3 cut(s)	110, 788, 902
Eco57I	CTGAAG	2 cut(s)	680, 1143
Eco88I	CYCGRG	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	886
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	45
EcoRII	CCWGG	3 cut(s)	775, 916, 1108
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	488
EcoT22I	ATGCAT	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	1080
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	3 cut(s)	175, 400, 492
FaqI	GGGAC	2 cut(s)	123, 391
FatI	CATG	3 cut(s)	171, 396, 488
FokI	GGATG	4 cut(s)	2, 446, 736, 1061
FriOI	GRGCYC	1 cut(s)	1080
FspBI	CTAG	3 cut(s)	114, 1038, 1118
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	3 cut(s)	306, 569, 868
HgaI	GACGC	1 cut(s)	983
Hin1II	CATG	3 cut(s)	175, 400, 492
HincII	GTYRAC	2 cut(s)	555, 1008
HindII	GTYRAC	2 cut(s)	555, 1008
HindIII	AAGCTT	1 cut(s)	922
HinfI	GANTC	5 cut(s)	34, 443, 1070, 1168, 1214
HphI	GGTGA	1 cut(s)	1137
Hpy166II	GTNNAC	4 cut(s)	555, 1008, 1145, 1218
Hpy188I	TCNGA	5 cut(s)	285, 660, 1075, 1162, 1226
Hpy8I	GTNNAC	4 cut(s)	555, 1008, 1145, 1218
Hpy99I	CGWCG	2 cut(s)	276, 1259
HpyAV	CCTTC	5 cut(s)	68, 423, 496, 686, 1250
HpyCH4III	ACNGT	5 cut(s)	23, 166, 617, 1201, 1269
HpyCH4IV	ACGT	2 cut(s)	628, 886
HpyCH4V	TGCA	7 cut(s)	15, 141, 179, 392, 818, 950, 1052
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	4 cut(s)	312, 473, 1210, 1223
HpySE526I	ACGT	2 cut(s)	628, 886
Hsp92II	CATG	3 cut(s)	175, 400, 492
Kzo9I	GATC	8 cut(s)	181, 436, 534, 620, 726, 877, 955, 1013
LmnI	GCTCC	1 cut(s)	778
LweI	GCATC	2 cut(s)	24, 1039
MaeI	CTAG	3 cut(s)	114, 1038, 1118
MaeII	ACGT	2 cut(s)	628, 886
MaeIII	GTNAC	2 cut(s)	444, 674
MalI	GATC	8 cut(s)	183, 438, 536, 622, 728, 879, 957, 1015
MboI	GATC	8 cut(s)	181, 436, 534, 620, 726, 877, 955, 1013
MboII	GAAGA	5 cut(s)	476, 544, 673, 1122, 1149
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	2 cut(s)	620, 877
MhlI	GDGCHC	2 cut(s)	775, 1080
MluCI	AATT	7 cut(s)	45, 367, 561, 593, 895, 1056, 1125
MlyI	GAGTC	3 cut(s)	43, 452, 1223
Mph1103I	ATGCAT	1 cut(s)	17
MroXI	GAANNNNTTC	2 cut(s)	696, 1192
MseI	TTAA	2 cut(s)	159, 1248
MspCI	CTTAAG	1 cut(s)	158
MspR9I	CCNGG	3 cut(s)	777, 918, 1110
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	3 cut(s)	777, 918, 1110
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	8 cut(s)	181, 436, 534, 620, 726, 877, 955, 1013
NlaIII	CATG	3 cut(s)	175, 400, 492
NlaIV	GGNNCC	2 cut(s)	70, 111
NmuCI	GTSAC	2 cut(s)	444, 674
NruI	TCGCGA	1 cut(s)	690
NsiI	ATGCAT	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	569
PdmI	GAANNNNTTC	2 cut(s)	696, 1192
PfeI	GAWTC	2 cut(s)	1070, 1168
PflFI	GACNNNGTC	1 cut(s)	114
PflMI	CCANNNNNTGG	1 cut(s)	797
PfoI	TCCNGGA	2 cut(s)	916, 1108
PleI	GAGTC	3 cut(s)	42, 451, 1222
PpsI	GAGTC	3 cut(s)	42, 451, 1222
Ppu21I	YACGTR	1 cut(s)	887
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	3 cut(s)	775, 916, 1108
PspGI	CCWGG	3 cut(s)	775, 916, 1108
PspN4I	GGNNCC	2 cut(s)	70, 111
PspPI	GGNCC	3 cut(s)	110, 788, 902
PspPPI	RGGWCCY	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	620, 877
PsyI	GACNNNGTC	1 cut(s)	114
RruI	TCGCGA	1 cut(s)	690
RsaI	GTAC	3 cut(s)	467, 1174, 1266
RsaNI	GTAC	3 cut(s)	466, 1173, 1265
SaqAI	TTAA	2 cut(s)	159, 1248
Sau3AI	GATC	8 cut(s)	181, 436, 534, 620, 726, 877, 955, 1013
Sau96I	GGNCC	3 cut(s)	110, 788, 902
SchI	GAGTC	3 cut(s)	43, 452, 1223
ScrFI	CCNGG	3 cut(s)	777, 918, 1110
SduI	GDGCHC	2 cut(s)	775, 1080
SfaNI	GCATC	2 cut(s)	24, 1039
SfcI	CTRYAG	2 cut(s)	616, 1029
Sfr274I	CTCGAG	1 cut(s)	440
SinI	GGWCC	3 cut(s)	110, 788, 902
SlaI	CTCGAG	1 cut(s)	440
SmlI	CTYRAG	3 cut(s)	119, 158, 440
SmoI	CTYRAG	3 cut(s)	119, 158, 440
Sse9I	AATT	7 cut(s)	45, 367, 561, 593, 895, 1056, 1125
SseBI	AGGCCT	1 cut(s)	569
SsiI	CCGC	1 cut(s)	1003
SspI	AATATT	1 cut(s)	1192
SspMI	CTAG	3 cut(s)	114, 1038, 1118
StuI	AGGCCT	1 cut(s)	569
StyD4I	CCNGG	3 cut(s)	775, 916, 1108
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	5 cut(s)	23, 166, 617, 1201, 1269
TaiI	ACGT	2 cut(s)	631, 889
TaqI	TCGA	4 cut(s)	37, 196, 441, 1196
TaqII	GACCGA	1 cut(s)	919
TasI	AATT	7 cut(s)	45, 367, 561, 593, 895, 1056, 1125
TatI	WGTACW	2 cut(s)	465, 1264
TfiI	GAWTC	2 cut(s)	1070, 1168
Tru1I	TTAA	2 cut(s)	159, 1248
Tru9I	TTAA	2 cut(s)	159, 1248
TscAI	CASTG	2 cut(s)	544, 1072
TseFI	GTSAC	2 cut(s)	444, 674
Tsp45I	GTSAC	2 cut(s)	444, 674
TspDTI	ATGAA	3 cut(s)	200, 413, 1232
TspRI	CASTG	2 cut(s)	544, 1072
Tth111I	GACNNNGTC	1 cut(s)	114
Van91I	CCANNNNNTGG	1 cut(s)	797
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	3 cut(s)	110, 788, 902
XagI	CCTNNNNNAGG	1 cut(s)	886
XapI	RAATTY	5 cut(s)	45, 367, 593, 895, 1125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XhoI	CTCGAG	1 cut(s)	440
XmnI	GAANNNNTTC	2 cut(s)	696, 1192
XspI	CTAG	3 cut(s)	114, 1038, 1118
Zsp2I	ATGCAT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.