Rh2BG448300
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003081
Physical Location & Seq
Forward (+)
63276208 .. 63278657
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG448300.1

Sequence Viewer

Length: 888 bp
ATGATTGCTCTAGAGCAGGGATTTAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAACCAGATTATGCATATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGATGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCAGTAATTGTTGGCAGTGAATCCGAGCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCAGTTGTATCTTCAGAGCAGAATCGTACCACTTCTGGTAGAAATATTTCGACCGTAAAAAACTTAAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTTAATAGCGACGAGAGAGTACAGTATTAGCAGTCGCTTCTCTCAATATGTCGCCCACTGTAAATTTGAAAAACGGTATACAGTTCTCACACACTTCGGGTGGAATTTGTTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04392 map04011 map04392
Pfam Domains
Protein Families
Pkinase

Protein Analysis

295

Amino Acids

32.7

Weight (kDa)

9.83

Isoelectric Point (pI)

70.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 320
AccI GTMKAC 1 cut(s) 848
AccII CGCG 1 cut(s) 213
AciI CCGC 1 cut(s) 526
AclWI GGATC 3 cut(s) 395, 473, 544
AcsI RAATTY 5 cut(s) 116, 418, 648, 833, 874
AcuI CTGAAG 2 cut(s) 203, 669
AfaI GTAC 2 cut(s) 700, 791
AfiI CCNNNNNNNGG 2 cut(s) 320, 411
AflII CTTAAG 1 cut(s) 736
AgsI TTSAA 3 cut(s) 256, 350, 839
AjnI CCWGG 3 cut(s) 298, 439, 631
AluBI AGCT 2 cut(s) 318, 447
AluI AGCT 2 cut(s) 318, 447
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 3 cut(s) 395, 473, 544
AoxI GGCC 1 cut(s) 90
ApoI RAATTY 5 cut(s) 116, 418, 648, 833, 874
Asp700I GAANNNNTTC 2 cut(s) 219, 718
AspS9I GGNCC 2 cut(s) 311, 425
AsuHPI GGTGA 1 cut(s) 663
AvaII GGWCC 2 cut(s) 311, 425
BanII GRGCYC 1 cut(s) 603
BarI GAAGNNNNNNTAC 2 cut(s) 637, 669
BauI CACGAG 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 298
BccI CCATC 1 cut(s) 490
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 3 cut(s) 300, 441, 633
BcoDI GTCTC 1 cut(s) 754
BfaI CTAG 4 cut(s) 11, 516, 561, 641
BfmI CTRYAG 2 cut(s) 139, 552
BfrI CTTAAG 1 cut(s) 736
BglII AGATCT 1 cut(s) 143
Bme1390I CCNGG 3 cut(s) 300, 441, 633
Bme18I GGWCC 2 cut(s) 311, 425
BmgT120I GGNCC 2 cut(s) 311, 425
BmrFI CCNGG 3 cut(s) 300, 441, 633
BmsI GCATC 2 cut(s) 487, 562
BpmI CTGGAG 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 411
Bse1I ACTGG 4 cut(s) 332, 388, 538, 674
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 3 cut(s) 300, 441, 633
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 2 cut(s) 320, 411
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 4 cut(s) 332, 388, 538, 674
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 726
BshFI GGCC 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 726
BsiHKAI GWGCWC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 320, 411
BsmAI GTCTC 1 cut(s) 754
BsnI GGCC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 754
Bsp1286I GDGCHC 2 cut(s) 298, 603
Bsp143I GATC 6 cut(s) 57, 143, 249, 400, 478, 536
Bsp68I TCGCGA 1 cut(s) 213
BspACI CCGC 1 cut(s) 526
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 761
BspFNI CGCG 1 cut(s) 213
BspPI GGATC 3 cut(s) 395, 473, 544
BspTI CTTAAG 1 cut(s) 736
BspTNI GGTCTC 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 4 cut(s) 332, 388, 538, 674
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 6 cut(s) 57, 143, 249, 400, 478, 536
BssNAI GTATAC 1 cut(s) 849
BssSI CACGAG 1 cut(s) 291
Bst1107I GTATAC 1 cut(s) 849
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 3 cut(s) 300, 441, 633
Bst4CI ACNGT 6 cut(s) 140, 727, 794, 830, 846, 853
Bst6I CTCTTC 1 cut(s) 179
BstAFI CTTAAG 1 cut(s) 736
BstBAI YACGTR 1 cut(s) 410
BstDEI CTNAG 1 cut(s) 748
BstDSI CCRYGG 1 cut(s) 100
BstENI CCTNNNNNAGG 1 cut(s) 409
BstF5I GGATG 1 cut(s) 577
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 6 cut(s) 60, 146, 252, 403, 481, 539
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 6 cut(s) 57, 143, 249, 400, 478, 536
BstMCI CGRYCG 1 cut(s) 726
BstNI CCWGG 3 cut(s) 300, 441, 633
BstSCI CCNGG 3 cut(s) 298, 439, 631
BstSFI CTRYAG 2 cut(s) 139, 552
BstUI CGCG 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 143, 400
BstYI RGATCY 2 cut(s) 143, 400
BstZ17I GTATAC 1 cut(s) 849
BsuRI GGCC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 577
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 3 cut(s) 67, 595, 826
BtuMI TCGCGA 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 311, 425
Csp6I GTAC 2 cut(s) 699, 790
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviJI RGCY 6 cut(s) 29, 92, 318, 447, 551, 601
CviKI_1 RGCY 6 cut(s) 29, 92, 318, 447, 551, 601
CviQI GTAC 2 cut(s) 699, 790
DdeI CTNAG 1 cut(s) 748
DpnI GATC 6 cut(s) 59, 145, 251, 402, 480, 538
DpnII GATC 6 cut(s) 57, 143, 249, 400, 478, 536
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 603
Eco31I GGTCTC 1 cut(s) 754
Eco47I GGWCC 2 cut(s) 311, 425
Eco57I CTGAAG 2 cut(s) 203, 669
EcoNI CCTNNNNNAGG 1 cut(s) 409
EcoRII CCWGG 3 cut(s) 298, 439, 631
EcoT22I ATGCAT 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 603
FaiI YATR 8 cut(s) 51, 97, 127, 174, 178, 234, 819, 849
FblI GTMKAC 1 cut(s) 848
FokI GGATG 1 cut(s) 584
FriOI GRGCYC 1 cut(s) 603
FspBI CTAG 4 cut(s) 11, 516, 561, 641
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 92
HincII GTYRAC 2 cut(s) 78, 531
HindII GTYRAC 2 cut(s) 78, 531
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 2 cut(s) 593, 694
HphI GGTGA 1 cut(s) 663
Hpy166II GTNNAC 5 cut(s) 78, 531, 671, 743, 849
Hpy188I TCNGA 4 cut(s) 183, 598, 688, 751
Hpy188III TCNNGA 7 cut(s) 11, 197, 212, 253, 321, 423, 569
Hpy8I GTNNAC 5 cut(s) 78, 531, 671, 743, 849
Hpy99I CGWCG 1 cut(s) 784
HpyAV CCTTC 2 cut(s) 209, 775
HpyCH4III ACNGT 6 cut(s) 140, 727, 794, 830, 846, 853
HpyCH4IV ACGT 2 cut(s) 151, 409
HpyCH4V TGCA 5 cut(s) 176, 341, 473, 500, 575
HpyF3I CTNAG 1 cut(s) 748
HpySE526I ACGT 2 cut(s) 151, 409
Kzo9I GATC 6 cut(s) 57, 143, 249, 400, 478, 536
LmnI GCTCC 1 cut(s) 301
LweI GCATC 2 cut(s) 487, 562
MaeI CTAG 4 cut(s) 11, 516, 561, 641
MaeII ACGT 2 cut(s) 151, 409
MaeIII GTNAC 1 cut(s) 197
MalI GATC 6 cut(s) 59, 145, 251, 402, 480, 538
MboI GATC 6 cut(s) 57, 143, 249, 400, 478, 536
MboII GAAGA 4 cut(s) 67, 196, 645, 675
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 2 cut(s) 143, 400
MhlI GDGCHC 2 cut(s) 298, 603
MluCI AATT 7 cut(s) 84, 116, 418, 579, 648, 833, 874
Mph1103I ATGCAT 1 cut(s) 178
MroXI GAANNNNTTC 2 cut(s) 219, 718
MseI TTAA 4 cut(s) 24, 737, 773, 886
MspCI CTTAAG 1 cut(s) 736
MspR9I CCNGG 3 cut(s) 300, 441, 633
MunI CAATTG 1 cut(s) 84
MvaI CCWGG 3 cut(s) 300, 441, 633
MvnI CGCG 1 cut(s) 213
NdeII GATC 6 cut(s) 57, 143, 249, 400, 478, 536
NmuCI GTSAC 1 cut(s) 197
NruI TCGCGA 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 178
PceI AGGCCT 1 cut(s) 92
PdmI GAANNNNTTC 2 cut(s) 219, 718
PfeI GAWTC 2 cut(s) 593, 694
PflMI CCANNNNNTGG 1 cut(s) 320
PfoI TCCNGGA 2 cut(s) 439, 631
Ppu21I YACGTR 1 cut(s) 410
Psp6I CCWGG 3 cut(s) 298, 439, 631
PspGI CCWGG 3 cut(s) 298, 439, 631
PspPI GGNCC 2 cut(s) 311, 425
PsuI RGATCY 2 cut(s) 143, 400
RruI TCGCGA 1 cut(s) 213
RsaI GTAC 2 cut(s) 700, 791
RsaNI GTAC 2 cut(s) 699, 790
SaqAI TTAA 4 cut(s) 24, 737, 773, 886
Sau3AI GATC 6 cut(s) 57, 143, 249, 400, 478, 536
Sau96I GGNCC 2 cut(s) 311, 425
ScrFI CCNGG 3 cut(s) 300, 441, 633
SduI GDGCHC 2 cut(s) 298, 603
SfaNI GCATC 2 cut(s) 487, 562
SfcI CTRYAG 2 cut(s) 139, 552
SinI GGWCC 2 cut(s) 311, 425
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
Sse9I AATT 7 cut(s) 84, 116, 418, 579, 648, 833, 874
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 1 cut(s) 526
SspI AATATT 1 cut(s) 718
SspMI CTAG 4 cut(s) 11, 516, 561, 641
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 3 cut(s) 298, 439, 631
TaaI ACNGT 6 cut(s) 140, 727, 794, 830, 846, 853
TaiI ACGT 2 cut(s) 154, 412
TaqI TCGA 1 cut(s) 722
TaqII GACCGA 1 cut(s) 442
TasI AATT 7 cut(s) 84, 116, 418, 579, 648, 833, 874
TatI WGTACW 1 cut(s) 789
TfiI GAWTC 2 cut(s) 593, 694
Tru1I TTAA 4 cut(s) 24, 737, 773, 886
Tru9I TTAA 4 cut(s) 24, 737, 773, 886
TscAI CASTG 3 cut(s) 67, 595, 833
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 757
TspRI CASTG 3 cut(s) 67, 595, 833
Van91I CCANNNNNTGG 1 cut(s) 320
Vha464I CTTAAG 1 cut(s) 736
VpaK11BI GGWCC 2 cut(s) 311, 425
XagI CCTNNNNNAGG 1 cut(s) 409
XapI RAATTY 5 cut(s) 116, 418, 648, 833, 874
XbaI TCTAGA 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 848
XmnI GAANNNNTTC 2 cut(s) 219, 718
XspI CTAG 4 cut(s) 11, 516, 561, 641
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.