Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003081

Physical Location & Seq

Genomic Coordinates Forward (+)

64885118 .. 64890875

Gene Structure 5758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG438100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGATTTATTGGGACCTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAACTTCCTAATGGGATTGGGTCGTCGGGCAAATCAGATTTACATCATTGACTTCGGCCTTGCTAAGAAGTATAGAGACACATCAACCCATCAGCATATTCCTTATAGAGATAATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAAGTCGAAGGGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAACCAGATTATGCTTATCTGAAGAGACTGTTCCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGACGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCAGTGATTGTTGGCAGTGAATCCGATCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCTGTTGTATCTTCAGAGCAGAATCGTACGACTTCTGGTAGAAATATTTCGACCGTAAAAAACTTAGAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTTAATAGTGACGAGAGAGTACAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

393

Amino Acids

44.06

Weight (kDa)

9.65

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	8 - 184	5.1e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 146	8.2e-17	Protein kinase domain
Pkinase_fungal	PF17667	31 - 125	1.2e-08	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72710
fragaria_vesca	FvH4_6g34010 FvH4_6g34010 FvH4_6g34010
malus_domestica	MD09G1190100.v1.1 MD17G1173000.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.3G046000_v2.0.a1
pyrus_communis	pycom09g10660 pycom17g17150
rosa_chinensis	RchiOBHm_Chr2g0143801 RchiOBHm_Chr2g0143831 RchiOBHm_Chr2g0143921 RchiOBHm_Chr2g0143961 RchiOBHm_Chr2g0144121 RchiOBHm_Chr2g0144141 RchiOBHm_Chr2g0144191 RchiOBHm_Chr2g0144221 RchiOBHm_Chr2g0144271
rosa_laevigata	RLG00000020070
rosa_multiflora	Rmu_sc0002354.1_g000001 Rmu_sc0012360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101420
rosa_rugosa	Rorug02G0385600 Rorug02G0385700
rosa_samantha	Rh2AG438100 Rh2BG446500 Rh2BG448300 Rh2CG424700 Rh2DG455900 Rh2DG456800 Rh2DG457800
rosa_wichuraiana	Rw2G033290 Rw2G033320 Rw2G035780 Rw2G035830 Rw2G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	701
AccII	CGCG	1 cut(s)	594
AciI	CCGC	1 cut(s)	907
AclWI	GGATC	4 cut(s)	776, 854, 925, 974
AcsI	RAATTY	4 cut(s)	271, 497, 799, 1029
AcuI	CTGAAG	2 cut(s)	584, 1050
AfaI	GTAC	3 cut(s)	371, 1081, 1173
AfiI	CCNNNNNNNGG	3 cut(s)	398, 701, 792
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	5 cut(s)	37, 323, 406, 637, 731
AjnI	CCWGG	3 cut(s)	679, 820, 1012
AluBI	AGCT	2 cut(s)	699, 828
AluI	AGCT	2 cut(s)	699, 828
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	4 cut(s)	63, 222, 562, 1136
AlwI	GGATC	4 cut(s)	776, 854, 925, 974
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	208, 471
ApoI	RAATTY	4 cut(s)	271, 497, 799, 1029
Asp700I	GAANNNNTTC	2 cut(s)	600, 1099
AspS9I	GGNCC	3 cut(s)	14, 692, 806
AsuHPI	GGTGA	1 cut(s)	1044
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	3 cut(s)	14, 692, 806
BarI	GAAGNNNNNNTAC	2 cut(s)	1018, 1050
BauI	CACGAG	1 cut(s)	672
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	679
BccI	CCATC	2 cut(s)	249, 871
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	3 cut(s)	681, 822, 1014
BcoDI	GTCTC	4 cut(s)	63, 222, 562, 1136
BfaI	CTAG	4 cut(s)	18, 897, 942, 1022
BfmI	CTRYAG	2 cut(s)	520, 933
BfrI	CTTAAG	1 cut(s)	62
BglII	AGATCT	1 cut(s)	524
Bme1390I	CCNGG	3 cut(s)	681, 822, 1014
Bme18I	GGWCC	3 cut(s)	14, 692, 806
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	14, 692, 806
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	3 cut(s)	681, 822, 1014
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	943
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	791
BsaBI	GATNNNNATC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	1136
BsaJI	CCNNGG	2 cut(s)	392, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	661, 691
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 701, 792
Bse1I	ACTGG	4 cut(s)	283, 713, 769, 919
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	3 cut(s)	681, 822, 1014
BseDI	CCNNGG	2 cut(s)	392, 481
BseGI	GGATG	2 cut(s)	343, 958
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	3 cut(s)	398, 701, 792
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	1 cut(s)	1144
BseNI	ACTGG	4 cut(s)	283, 713, 769, 919
Bsh1236I	CGCG	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	1107
BshFI	GGCC	2 cut(s)	210, 473
BsiEI	CGRYCG	1 cut(s)	1107
BsiHKAI	GWGCWC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	344
BsiWI	CGTACG	1 cut(s)	1079
BslFI	GGGAC	2 cut(s)	27, 295
BslI	CCNNNNNNNGG	3 cut(s)	398, 701, 792
BsmAI	GTCTC	4 cut(s)	63, 222, 562, 1136
BsmFI	GGGAC	2 cut(s)	27, 295
BsnI	GGCC	2 cut(s)	210, 473
Bso31I	GGTCTC	1 cut(s)	1136
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	9 cut(s)	85, 340, 438, 524, 630, 781, 859, 917, 979
Bsp19I	CCATGG	1 cut(s)	392
Bsp68I	TCGCGA	1 cut(s)	594
BspACI	CCGC	1 cut(s)	907
BspANI	GGCC	2 cut(s)	210, 473
BspCNI	CTCAG	1 cut(s)	1143
BspFNI	CGCG	1 cut(s)	594
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	4 cut(s)	776, 854, 925, 974
BspTI	CTTAAG	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	1136
BsrDI	GCAATG	1 cut(s)	888
BsrI	ACTGG	4 cut(s)	283, 713, 769, 919
BssECI	CCNNGG	2 cut(s)	392, 481
BssMI	GATC	9 cut(s)	85, 340, 438, 524, 630, 781, 859, 917, 979
BssSI	CACGAG	1 cut(s)	672
BssT1I	CCWWGG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	672
Bst2UI	CCWGG	3 cut(s)	681, 822, 1014
Bst4CI	ACNGT	5 cut(s)	70, 521, 573, 1108, 1176
Bst6I	CTCTTC	1 cut(s)	560
BstAFI	CTTAAG	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	791
BstC8I	GCNNGC	2 cut(s)	81, 298
BstDEI	CTNAG	4 cut(s)	216, 377, 1117, 1130
BstDSI	CCRYGG	2 cut(s)	392, 481
BstENI	CCTNNNNNAGG	1 cut(s)	790
BstF5I	GGATG	2 cut(s)	343, 958
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	9 cut(s)	88, 343, 441, 527, 633, 784, 862, 920, 982
BstMAI	GTCTC	4 cut(s)	63, 222, 562, 1136
BstMBI	GATC	9 cut(s)	85, 340, 438, 524, 630, 781, 859, 917, 979
BstMCI	CGRYCG	1 cut(s)	1107
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	3 cut(s)	681, 822, 1014
BstSCI	CCNGG	3 cut(s)	679, 820, 1012
BstSFI	CTRYAG	2 cut(s)	520, 933
BstUI	CGCG	1 cut(s)	594
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	2 cut(s)	524, 781
BstYI	RGATCY	2 cut(s)	524, 781
BsuRI	GGCC	2 cut(s)	210, 473
BtgI	CCRYGG	2 cut(s)	392, 481
BtsCI	GGATG	2 cut(s)	343, 958
BtsI	GCAGTG	2 cut(s)	963, 976
BtsIMutI	CAGTG	3 cut(s)	448, 963, 976
BtuMI	TCGCGA	1 cut(s)	594
Cac8I	GCNNGC	2 cut(s)	81, 298
Cfr13I	GGNCC	3 cut(s)	14, 692, 806
CseI	GACGC	1 cut(s)	887
Csp6I	GTAC	3 cut(s)	370, 1080, 1172
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	3 cut(s)	76, 301, 393
CviJI	RGCY	6 cut(s)	210, 410, 473, 699, 828, 932
CviKI_1	RGCY	6 cut(s)	210, 410, 473, 699, 828, 932
CviQI	GTAC	3 cut(s)	370, 1080, 1172
DdeI	CTNAG	4 cut(s)	216, 377, 1117, 1130
DpnI	GATC	9 cut(s)	87, 342, 440, 526, 632, 783, 861, 919, 981
DpnII	GATC	9 cut(s)	85, 340, 438, 524, 630, 781, 859, 917, 979
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	392
Eco147I	AGGCCT	1 cut(s)	473
Eco31I	GGTCTC	1 cut(s)	1136
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	3 cut(s)	14, 692, 806
Eco57I	CTGAAG	2 cut(s)	584, 1050
Eco88I	CYCGRG	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	790
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRII	CCWGG	3 cut(s)	679, 820, 1012
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	3 cut(s)	79, 304, 396
FaqI	GGGAC	2 cut(s)	27, 295
FatI	CATG	3 cut(s)	75, 300, 392
FokI	GGATG	2 cut(s)	350, 965
FspBI	CTAG	4 cut(s)	18, 897, 942, 1022
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	2 cut(s)	210, 473
HgaI	GACGC	1 cut(s)	887
Hin1II	CATG	3 cut(s)	79, 304, 396
HincII	GTYRAC	2 cut(s)	459, 912
HindII	GTYRAC	2 cut(s)	459, 912
HindIII	AAGCTT	1 cut(s)	826
HinfI	GANTC	4 cut(s)	347, 974, 1075, 1121
HphI	GGTGA	1 cut(s)	1044
Hpy166II	GTNNAC	4 cut(s)	459, 912, 1052, 1125
Hpy188I	TCNGA	5 cut(s)	189, 564, 979, 1069, 1133
Hpy188III	TCNNGA	8 cut(s)	23, 137, 344, 593, 634, 702, 804, 950
Hpy8I	GTNNAC	4 cut(s)	459, 912, 1052, 1125
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	4 cut(s)	327, 400, 590, 1157
HpyCH4III	ACNGT	5 cut(s)	70, 521, 573, 1108, 1176
HpyCH4IV	ACGT	2 cut(s)	532, 790
HpyCH4V	TGCA	6 cut(s)	45, 83, 296, 722, 854, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	4 cut(s)	216, 377, 1117, 1130
HpySE526I	ACGT	2 cut(s)	532, 790
Hsp92II	CATG	3 cut(s)	79, 304, 396
Kzo9I	GATC	9 cut(s)	85, 340, 438, 524, 630, 781, 859, 917, 979
LmnI	GCTCC	1 cut(s)	682
LweI	GCATC	1 cut(s)	943
MaeI	CTAG	4 cut(s)	18, 897, 942, 1022
MaeII	ACGT	2 cut(s)	532, 790
MaeIII	GTNAC	3 cut(s)	348, 578, 1160
MalI	GATC	9 cut(s)	87, 342, 440, 526, 632, 783, 861, 919, 981
MboI	GATC	9 cut(s)	85, 340, 438, 524, 630, 781, 859, 917, 979
MboII	GAAGA	5 cut(s)	380, 448, 577, 1026, 1056
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	2 cut(s)	524, 781
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	5 cut(s)	271, 465, 497, 799, 1029
MlyI	GAGTC	2 cut(s)	356, 1130
MroXI	GAANNNNTTC	2 cut(s)	600, 1099
MseI	TTAA	2 cut(s)	63, 1155
MspCI	CTTAAG	1 cut(s)	62
MspR9I	CCNGG	3 cut(s)	681, 822, 1014
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	3 cut(s)	681, 822, 1014
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	9 cut(s)	85, 340, 438, 524, 630, 781, 859, 917, 979
NlaIII	CATG	3 cut(s)	79, 304, 396
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	3 cut(s)	348, 578, 1160
NruI	TCGCGA	1 cut(s)	594
PaeR7I	CTCGAG	1 cut(s)	344
PceI	AGGCCT	1 cut(s)	473
PdmI	GAANNNNTTC	2 cut(s)	600, 1099
PfeI	GAWTC	2 cut(s)	974, 1075
Pfl23II	CGTACG	1 cut(s)	1079
PflFI	GACNNNGTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	701
PfoI	TCCNGGA	2 cut(s)	820, 1012
PleI	GAGTC	2 cut(s)	355, 1129
PpsI	GAGTC	2 cut(s)	355, 1129
Ppu21I	YACGTR	1 cut(s)	791
PpuMI	RGGWCCY	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	14
Psp6I	CCWGG	3 cut(s)	679, 820, 1012
PspGI	CCWGG	3 cut(s)	679, 820, 1012
PspLI	CGTACG	1 cut(s)	1079
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	3 cut(s)	14, 692, 806
PspPPI	RGGWCCY	1 cut(s)	14
PsuI	RGATCY	2 cut(s)	524, 781
PsyI	GACNNNGTC	1 cut(s)	18
RruI	TCGCGA	1 cut(s)	594
RsaI	GTAC	3 cut(s)	371, 1081, 1173
RsaNI	GTAC	3 cut(s)	370, 1080, 1172
SaqAI	TTAA	2 cut(s)	63, 1155
Sau3AI	GATC	9 cut(s)	85, 340, 438, 524, 630, 781, 859, 917, 979
Sau96I	GGNCC	3 cut(s)	14, 692, 806
SchI	GAGTC	2 cut(s)	356, 1130
ScrFI	CCNGG	3 cut(s)	681, 822, 1014
SduI	GDGCHC	1 cut(s)	679
SfaNI	GCATC	1 cut(s)	943
SfcI	CTRYAG	2 cut(s)	520, 933
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	3 cut(s)	14, 692, 806
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	3 cut(s)	23, 62, 344
SmoI	CTYRAG	3 cut(s)	23, 62, 344
Sse9I	AATT	5 cut(s)	271, 465, 497, 799, 1029
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	1 cut(s)	907
SspI	AATATT	1 cut(s)	1099
SspMI	CTAG	4 cut(s)	18, 897, 942, 1022
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	679, 820, 1012
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	5 cut(s)	70, 521, 573, 1108, 1176
TaiI	ACGT	2 cut(s)	535, 793
TaqI	TCGA	4 cut(s)	100, 331, 345, 1103
TaqII	GACCGA	1 cut(s)	823
TasI	AATT	5 cut(s)	271, 465, 497, 799, 1029
TatI	WGTACW	2 cut(s)	369, 1171
TfiI	GAWTC	2 cut(s)	974, 1075
Tru1I	TTAA	2 cut(s)	63, 1155
Tru9I	TTAA	2 cut(s)	63, 1155
TscAI	CASTG	3 cut(s)	448, 963, 976
TseFI	GTSAC	3 cut(s)	348, 578, 1160
Tsp45I	GTSAC	3 cut(s)	348, 578, 1160
TspDTI	ATGAA	3 cut(s)	104, 317, 1139
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	3 cut(s)	448, 963, 976
Tth111I	GACNNNGTC	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	701
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	3 cut(s)	14, 692, 806
XagI	CCTNNNNNAGG	1 cut(s)	790
XapI	RAATTY	4 cut(s)	271, 497, 799, 1029
XhoI	CTCGAG	1 cut(s)	344
XmnI	GAANNNNTTC	2 cut(s)	600, 1099
XspI	CTAG	4 cut(s)	18, 897, 942, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.