Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003081

Physical Location & Seq

Genomic Coordinates Forward (+)

63122427 .. 63132098

Gene Structure 9672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG446500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGACGTGGGGTTGCTATATTTTCTTCTTGCTGATTTGTGCTTCTCTTTCTCAGGAAAATGTCAAGACAAAGCATCCACAGTTGCTGTATGAGTCGAAGTTGTATAAAATACTACAGGGAGGAACTGGAATTCCAAATGTGCGATGGTTTGGCACTGAAGGAGACTACAATGTTCTTGTGATGGATTTATTGGGACCTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAACTTCCTAATGGGATTGGGTCGTCGGGCAAATCAGATTTACATCATTGACTTCGGCCTCGCTAAGAAGTATAGAGACACATCAACCCATCAGCATATTCCTTATAGAGATAATAAGAATTTGACTGGGACAGCAAGATATGCAAGCATGAATACTCATCTTGGCATTGAACAAAGCCGAAGGGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTCTACGTTTTGATGATAAGCCAGATTATGCTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACAATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCTCCTGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGACGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCAGTAATTGTTGGCAGTGAATCCGAGCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACACTAGGTAAAATTTCTTCTGTCCAAAGAAGTTCACCAGTTGTATCTTCAGAGCAGAATCGTACCACTTCTGGTAGAAATATTTCGACCGTAAAAAACTTAGAGTCCACCCTCAGAGGTATTGAGACCCTTCATTTTAATAGCGACGAGAGAGTACAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

453

Amino Acids

50.94

Weight (kDa)

9.51

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 206	5.4e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	50 - 212	8e-09	Protein tyrosine and serine/threonine kinase
Pkinase_fungal	PF17667	89 - 185	1.4e-08	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72710
fragaria_vesca	FvH4_6g34010 FvH4_6g34010 FvH4_6g34010
malus_domestica	MD09G1190100.v1.1 MD17G1173000.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.3G046000_v2.0.a1
pyrus_communis	pycom09g10660 pycom17g17150
rosa_chinensis	RchiOBHm_Chr2g0143801 RchiOBHm_Chr2g0143831 RchiOBHm_Chr2g0143921 RchiOBHm_Chr2g0143961 RchiOBHm_Chr2g0144121 RchiOBHm_Chr2g0144141 RchiOBHm_Chr2g0144191 RchiOBHm_Chr2g0144221 RchiOBHm_Chr2g0144271
rosa_laevigata	RLG00000020070
rosa_multiflora	Rmu_sc0002354.1_g000001 Rmu_sc0012360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101420
rosa_rugosa	Rorug02G0385600 Rorug02G0385700
rosa_samantha	Rh2AG438100 Rh2BG446500 Rh2BG448300 Rh2CG424700 Rh2DG455900 Rh2DG456800 Rh2DG457800
rosa_wichuraiana	Rw2G033290 Rw2G033320 Rw2G035780 Rw2G035830 Rw2G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	881
AccII	CGCG	1 cut(s)	774
AciI	CCGC	1 cut(s)	1087
AclWI	GGATC	3 cut(s)	956, 1034, 1105
AcsI	RAATTY	5 cut(s)	129, 451, 677, 979, 1209
AcuI	CTGAAG	3 cut(s)	177, 764, 1230
AfaI	GTAC	3 cut(s)	551, 1261, 1353
AfiI	CCNNNNNNNGG	3 cut(s)	578, 881, 972
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	5 cut(s)	217, 503, 586, 817, 911
AjiI	CACGTC	1 cut(s)	6
AjnI	CCWGG	3 cut(s)	859, 1000, 1192
AloI	GAACNNNNNNTCC	2 cut(s)	115, 147
AluBI	AGCT	2 cut(s)	879, 1008
AluI	AGCT	2 cut(s)	879, 1008
Alw21I	GWGCWC	1 cut(s)	859
Alw26I	GTCTC	4 cut(s)	156, 243, 402, 1316
AlwI	GGATC	3 cut(s)	956, 1034, 1105
AlwNI	CAGNNNCTG	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	388, 651
ApoI	RAATTY	5 cut(s)	129, 451, 677, 979, 1209
Asp700I	GAANNNNTTC	2 cut(s)	780, 1279
AspS9I	GGNCC	3 cut(s)	194, 872, 986
AsuHPI	GGTGA	1 cut(s)	1224
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	3 cut(s)	194, 872, 986
BanII	GRGCYC	1 cut(s)	1164
BarI	GAAGNNNNNNTAC	2 cut(s)	1198, 1230
BauI	CACGAG	1 cut(s)	852
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	859
BccI	CCATC	4 cut(s)	138, 175, 429, 1051
BceAI	ACGGC	1 cut(s)	645
BciT130I	CCWGG	3 cut(s)	861, 1002, 1194
BcoDI	GTCTC	4 cut(s)	156, 243, 402, 1316
BfaI	CTAG	4 cut(s)	198, 1077, 1122, 1202
BfmI	CTRYAG	3 cut(s)	113, 700, 1113
BfrI	CTTAAG	1 cut(s)	242
BglII	AGATCT	1 cut(s)	704
Bme1390I	CCNGG	3 cut(s)	861, 1002, 1194
Bme18I	GGWCC	3 cut(s)	194, 872, 986
BmeT110I	CYCGRG	1 cut(s)	524
BmgBI	CACGTC	1 cut(s)	6
BmgT120I	GGNCC	3 cut(s)	194, 872, 986
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	3 cut(s)	861, 1002, 1194
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	82, 1123
BmuI	ACTGGG	1 cut(s)	468
BpiI	GAAGAC	1 cut(s)	560
BpmI	CTGGAG	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	971
BsaBI	GATNNNNATC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	1316
BsaJI	CCNNGG	2 cut(s)	572, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	841, 871
Bsc4I	CCNNNNNNNGG	3 cut(s)	578, 881, 972
Bse1I	ACTGG	6 cut(s)	130, 463, 893, 949, 1099, 1235
Bse3DI	GCAATG	1 cut(s)	1068
Bse8I	GATNNNNATC	1 cut(s)	374
BseBI	CCWGG	3 cut(s)	861, 1002, 1194
BseDI	CCNNGG	2 cut(s)	572, 661
BseGI	GGATG	3 cut(s)	73, 523, 1138
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	3 cut(s)	578, 881, 972
BseMI	GCAATG	1 cut(s)	1068
BseMII	CTCAG	2 cut(s)	65, 1324
BseNI	ACTGG	6 cut(s)	130, 463, 893, 949, 1099, 1235
Bsh1236I	CGCG	1 cut(s)	774
Bsh1285I	CGRYCG	1 cut(s)	1287
BshFI	GGCC	2 cut(s)	390, 653
BsiEI	CGRYCG	1 cut(s)	1287
BsiHKAI	GWGCWC	1 cut(s)	859
BsiHKCI	CYCGRG	1 cut(s)	524
BslFI	GGGAC	2 cut(s)	207, 475
BslI	CCNNNNNNNGG	3 cut(s)	578, 881, 972
BsmAI	GTCTC	4 cut(s)	156, 243, 402, 1316
BsmFI	GGGAC	2 cut(s)	207, 475
BsnI	GGCC	2 cut(s)	390, 653
Bso31I	GGTCTC	1 cut(s)	1316
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	2 cut(s)	859, 1164
Bsp143I	GATC	7 cut(s)	265, 520, 618, 704, 961, 1039, 1097
Bsp19I	CCATGG	1 cut(s)	572
Bsp68I	TCGCGA	1 cut(s)	774
BspACI	CCGC	1 cut(s)	1087
BspANI	GGCC	2 cut(s)	390, 653
BspCNI	CTCAG	2 cut(s)	64, 1323
BspFNI	CGCG	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	3 cut(s)	956, 1034, 1105
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	1316
BsrDI	GCAATG	1 cut(s)	1068
BsrI	ACTGG	6 cut(s)	130, 463, 893, 949, 1099, 1235
BssECI	CCNNGG	2 cut(s)	572, 661
BssMI	GATC	7 cut(s)	265, 520, 618, 704, 961, 1039, 1097
BssSI	CACGAG	1 cut(s)	852
BssT1I	CCWWGG	1 cut(s)	572
Bst2BI	CACGAG	1 cut(s)	852
Bst2UI	CCWGG	3 cut(s)	861, 1002, 1194
Bst4CI	ACNGT	5 cut(s)	81, 250, 701, 1288, 1356
Bst6I	CTCTTC	1 cut(s)	740
BstAFI	CTTAAG	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstBAI	YACGTR	1 cut(s)	971
BstC8I	GCNNGC	2 cut(s)	261, 478
BstDEI	CTNAG	5 cut(s)	51, 396, 557, 1297, 1310
BstDSI	CCRYGG	2 cut(s)	572, 661
BstENI	CCTNNNNNAGG	1 cut(s)	970
BstF5I	GGATG	3 cut(s)	73, 523, 1138
BstFNI	CGCG	1 cut(s)	774
BstKTI	GATC	7 cut(s)	268, 523, 621, 707, 964, 1042, 1100
BstMAI	GTCTC	4 cut(s)	156, 243, 402, 1316
BstMBI	GATC	7 cut(s)	265, 520, 618, 704, 961, 1039, 1097
BstMCI	CGRYCG	1 cut(s)	1287
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	3 cut(s)	861, 1002, 1194
BstSCI	CCNGG	3 cut(s)	859, 1000, 1192
BstSFI	CTRYAG	3 cut(s)	113, 700, 1113
BstUI	CGCG	1 cut(s)	774
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	2 cut(s)	704, 961
BstYI	RGATCY	2 cut(s)	704, 961
BsuRI	GGCC	2 cut(s)	390, 653
BtgI	CCRYGG	2 cut(s)	572, 661
BtgZI	GCGATG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	73, 523, 1138
BtsI	GCAGTG	1 cut(s)	1156
BtsIMutI	CAGTG	3 cut(s)	153, 628, 1156
BtuMI	TCGCGA	1 cut(s)	774
Cac8I	GCNNGC	2 cut(s)	261, 478
CaiI	CAGNNNCTG	1 cut(s)	85
Cfr13I	GGNCC	3 cut(s)	194, 872, 986
CseI	GACGC	1 cut(s)	1067
Csp6I	GTAC	3 cut(s)	550, 1260, 1352
CspCI	CAANNNNNGTGG	2 cut(s)	661, 696
CviAII	CATG	3 cut(s)	256, 481, 573
CviJI	RGCY	9 cut(s)	390, 510, 590, 653, 727, 879, 1008, 1112, 1162
CviKI_1	RGCY	9 cut(s)	390, 510, 590, 653, 727, 879, 1008, 1112, 1162
CviQI	GTAC	3 cut(s)	550, 1260, 1352
DdeI	CTNAG	5 cut(s)	51, 396, 557, 1297, 1310
DpnI	GATC	7 cut(s)	267, 522, 620, 706, 963, 1041, 1099
DpnII	GATC	7 cut(s)	265, 520, 618, 704, 961, 1039, 1097
Eam1104I	CTCTTC	1 cut(s)	740
EarI	CTCTTC	1 cut(s)	740
Eco130I	CCWWGG	1 cut(s)	572
Eco147I	AGGCCT	1 cut(s)	653
Eco24I	GRGCYC	1 cut(s)	1164
Eco31I	GGTCTC	1 cut(s)	1316
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	3 cut(s)	194, 872, 986
Eco57I	CTGAAG	3 cut(s)	177, 764, 1230
Eco88I	CYCGRG	1 cut(s)	524
EcoNI	CCTNNNNNAGG	1 cut(s)	970
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	129
EcoRII	CCWGG	3 cut(s)	859, 1000, 1192
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	572
EcoT38I	GRGCYC	1 cut(s)	1164
ErhI	CCWWGG	1 cut(s)	572
FaeI	CATG	3 cut(s)	259, 484, 576
FaqI	GGGAC	2 cut(s)	207, 475
FatI	CATG	3 cut(s)	255, 480, 572
FokI	GGATG	3 cut(s)	60, 530, 1145
FriOI	GRGCYC	1 cut(s)	1164
FspBI	CTAG	4 cut(s)	198, 1077, 1122, 1202
GsuI	CTGGAG	1 cut(s)	876
HaeIII	GGCC	2 cut(s)	390, 653
HgaI	GACGC	1 cut(s)	1067
Hin1II	CATG	3 cut(s)	259, 484, 576
HincII	GTYRAC	2 cut(s)	639, 1092
HindII	GTYRAC	2 cut(s)	639, 1092
HindIII	AAGCTT	1 cut(s)	1006
HinfI	GANTC	5 cut(s)	92, 527, 1154, 1255, 1301
HphI	GGTGA	1 cut(s)	1224
Hpy166II	GTNNAC	4 cut(s)	639, 1092, 1232, 1305
Hpy188I	TCNGA	5 cut(s)	369, 744, 1159, 1249, 1313
Hpy8I	GTNNAC	4 cut(s)	639, 1092, 1232, 1305
Hpy99I	CGWCG	2 cut(s)	360, 1346
HpyAV	CCTTC	5 cut(s)	152, 507, 580, 770, 1337
HpyCH4III	ACNGT	5 cut(s)	81, 250, 701, 1288, 1356
HpyCH4IV	ACGT	3 cut(s)	5, 712, 970
HpyCH4V	TGCA	6 cut(s)	225, 263, 476, 902, 1034, 1136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	5 cut(s)	51, 396, 557, 1297, 1310
HpySE526I	ACGT	3 cut(s)	5, 712, 970
Hsp92II	CATG	3 cut(s)	259, 484, 576
Kzo9I	GATC	7 cut(s)	265, 520, 618, 704, 961, 1039, 1097
LmnI	GCTCC	1 cut(s)	862
LweI	GCATC	2 cut(s)	82, 1123
MaeI	CTAG	4 cut(s)	198, 1077, 1122, 1202
MaeII	ACGT	3 cut(s)	5, 712, 970
MaeIII	GTNAC	2 cut(s)	528, 758
MalI	GATC	7 cut(s)	267, 522, 620, 706, 963, 1041, 1099
MboI	GATC	7 cut(s)	265, 520, 618, 704, 961, 1039, 1097
MboII	GAAGA	6 cut(s)	16, 560, 628, 757, 1206, 1236
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	2 cut(s)	704, 961
MhlI	GDGCHC	2 cut(s)	859, 1164
MluCI	AATT	7 cut(s)	129, 451, 645, 677, 979, 1140, 1209
MlyI	GAGTC	3 cut(s)	101, 536, 1310
MroXI	GAANNNNTTC	2 cut(s)	780, 1279
MseI	TTAA	2 cut(s)	243, 1335
MspCI	CTTAAG	1 cut(s)	242
MspR9I	CCNGG	3 cut(s)	861, 1002, 1194
MunI	CAATTG	1 cut(s)	645
MvaI	CCWGG	3 cut(s)	861, 1002, 1194
MvnI	CGCG	1 cut(s)	774
MwoI	GCNNNNNNNGC	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	572
NdeII	GATC	7 cut(s)	265, 520, 618, 704, 961, 1039, 1097
NlaIII	CATG	3 cut(s)	259, 484, 576
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	2 cut(s)	528, 758
NruI	TCGCGA	1 cut(s)	774
PaeR7I	CTCGAG	1 cut(s)	524
PceI	AGGCCT	1 cut(s)	653
PdmI	GAANNNNTTC	2 cut(s)	780, 1279
PfeI	GAWTC	2 cut(s)	1154, 1255
PflFI	GACNNNGTC	1 cut(s)	198
PflMI	CCANNNNNTGG	1 cut(s)	881
PfoI	TCCNGGA	2 cut(s)	1000, 1192
PleI	GAGTC	3 cut(s)	100, 535, 1309
PpsI	GAGTC	3 cut(s)	100, 535, 1309
Ppu21I	YACGTR	1 cut(s)	971
PpuMI	RGGWCCY	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	3 cut(s)	859, 1000, 1192
PspGI	CCWGG	3 cut(s)	859, 1000, 1192
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	3 cut(s)	194, 872, 986
PspPPI	RGGWCCY	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	704, 961
PsyI	GACNNNGTC	1 cut(s)	198
RruI	TCGCGA	1 cut(s)	774
RsaI	GTAC	3 cut(s)	551, 1261, 1353
RsaNI	GTAC	3 cut(s)	550, 1260, 1352
SaqAI	TTAA	2 cut(s)	243, 1335
Sau3AI	GATC	7 cut(s)	265, 520, 618, 704, 961, 1039, 1097
Sau96I	GGNCC	3 cut(s)	194, 872, 986
SchI	GAGTC	3 cut(s)	101, 536, 1310
ScrFI	CCNGG	3 cut(s)	861, 1002, 1194
SduI	GDGCHC	2 cut(s)	859, 1164
SfaNI	GCATC	2 cut(s)	82, 1123
SfcI	CTRYAG	3 cut(s)	113, 700, 1113
Sfr274I	CTCGAG	1 cut(s)	524
SinI	GGWCC	3 cut(s)	194, 872, 986
SlaI	CTCGAG	1 cut(s)	524
SmlI	CTYRAG	3 cut(s)	203, 242, 524
SmoI	CTYRAG	3 cut(s)	203, 242, 524
Sse9I	AATT	7 cut(s)	129, 451, 645, 677, 979, 1140, 1209
SseBI	AGGCCT	1 cut(s)	653
SsiI	CCGC	1 cut(s)	1087
SspI	AATATT	1 cut(s)	1279
SspMI	CTAG	4 cut(s)	198, 1077, 1122, 1202
StuI	AGGCCT	1 cut(s)	653
StyD4I	CCNGG	3 cut(s)	859, 1000, 1192
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	5 cut(s)	81, 250, 701, 1288, 1356
TaiI	ACGT	3 cut(s)	8, 715, 973
TaqI	TCGA	4 cut(s)	95, 280, 525, 1283
TaqII	GACCGA	1 cut(s)	1003
TasI	AATT	7 cut(s)	129, 451, 645, 677, 979, 1140, 1209
TatI	WGTACW	2 cut(s)	549, 1351
TfiI	GAWTC	2 cut(s)	1154, 1255
Tru1I	TTAA	2 cut(s)	243, 1335
Tru9I	TTAA	2 cut(s)	243, 1335
TscAI	CASTG	3 cut(s)	160, 628, 1156
TseFI	GTSAC	2 cut(s)	528, 758
Tsp45I	GTSAC	2 cut(s)	528, 758
TspDTI	ATGAA	3 cut(s)	284, 497, 1319
TspRI	CASTG	3 cut(s)	160, 628, 1156
Tth111I	GACNNNGTC	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	881
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	3 cut(s)	194, 872, 986
XagI	CCTNNNNNAGG	1 cut(s)	970
XapI	RAATTY	5 cut(s)	129, 451, 677, 979, 1209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XhoI	CTCGAG	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	780, 1279
XspI	CTAG	4 cut(s)	198, 1077, 1122, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.