Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003081

Physical Location & Seq

Genomic Coordinates Reverse (-)

65929130 .. 65932176

Gene Structure 3047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG455900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGATTTATTGGGACCTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAAGTTCCTAATGGGATTGGGTCGTCGGGCAAATCAGATTTACATCATTGACTTCGACCTCGCTAAGAAGTATAGAGACACATCAACCCATCAGCATATTCCTTATAGAGATAATAAGAATTTGACTGGGAGAGCAAGATATGCAAGCATGAATACTCATCTTGACATTGAACAAAGCCGAAGGGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTGTACGTTTTGATGATAAACCAGATTATGCTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGGTGGTGCTGGACCAAGCTCTGGACTGCCTCCAGTTGTTGCAAATGTTGAAAGACAATCAGGTGGGGAGGAAGTTAGACCTACTGGTTGGTCGTTGGCAGATCCCTCACGTAGGAGAAATTCTGGACCGATTGTAAATCCTGGAAGCTTGTCTAAACAAAAAAGTCCTGTTGCAAATGATCCATCTGTGTCTAAAGACGCAATGTTATCAAGTTCTAGTTTTTTGCGGTCAACTGGATCATCAAGGAGGGCTGTAGTTTCTAGCAGTCGGGATGCAGTAATTGTTGGCAGTGAATCCAAGCCCTCTCGCCCTCAAACCACAGAGGCAAGTCCTGGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

318

Amino Acids

35.82

Weight (kDa)

9.65

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	7 - 187	2.2e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 146	1.1e-12	Protein kinase domain
Pkinase_fungal	PF17667	31 - 125	1.1e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72710
fragaria_vesca	FvH4_6g34010 FvH4_6g34010 FvH4_6g34010
malus_domestica	MD09G1190100.v1.1 MD17G1173000.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.3G046000_v2.0.a1
pyrus_communis	pycom09g10660 pycom17g17150
rosa_chinensis	RchiOBHm_Chr2g0143801 RchiOBHm_Chr2g0143831 RchiOBHm_Chr2g0143921 RchiOBHm_Chr2g0143961 RchiOBHm_Chr2g0144121 RchiOBHm_Chr2g0144141 RchiOBHm_Chr2g0144191 RchiOBHm_Chr2g0144221 RchiOBHm_Chr2g0144271
rosa_laevigata	RLG00000020070
rosa_multiflora	Rmu_sc0002354.1_g000001 Rmu_sc0012360.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101420
rosa_rugosa	Rorug02G0385600 Rorug02G0385700
rosa_samantha	Rh2AG438100 Rh2BG446500 Rh2BG448300 Rh2CG424700 Rh2DG455900 Rh2DG456800 Rh2DG457800
rosa_wichuraiana	Rw2G033290 Rw2G033320 Rw2G035780 Rw2G035830 Rw2G036150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccII	CGCG	1 cut(s)	594
AciI	CCGC	1 cut(s)	841
AclWI	GGATC	3 cut(s)	710, 788, 859
AcsI	RAATTY	3 cut(s)	271, 497, 733
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	371, 531
AfiI	CCNNNNNNNGG	3 cut(s)	398, 635, 726
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	37, 323, 406, 665
AjnI	CCWGG	2 cut(s)	754, 946
AluBI	AGCT	2 cut(s)	633, 762
AluI	AGCT	2 cut(s)	633, 762
Alw26I	GTCTC	2 cut(s)	63, 222
AlwI	GGATC	3 cut(s)	710, 788, 859
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	471
ApoI	RAATTY	3 cut(s)	271, 497, 733
Asp700I	GAANNNNTTC	1 cut(s)	600
AspS9I	GGNCC	3 cut(s)	14, 626, 740
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	3 cut(s)	14, 626, 740
BbsI	GAAGAC	1 cut(s)	380
BccI	CCATC	2 cut(s)	249, 805
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	2 cut(s)	756, 948
BcoDI	GTCTC	2 cut(s)	63, 222
BfaI	CTAG	3 cut(s)	18, 831, 876
BfmI	CTRYAG	2 cut(s)	520, 867
BfrI	CTTAAG	1 cut(s)	62
BglII	AGATCT	1 cut(s)	524
Bme1390I	CCNGG	2 cut(s)	756, 948
Bme18I	GGWCC	3 cut(s)	14, 626, 740
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	14, 626, 740
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	2 cut(s)	756, 948
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	877
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	725
BsaBI	GATNNNNATC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	392, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 635, 726
Bse1I	ACTGG	4 cut(s)	283, 647, 703, 853
Bse3DI	GCAATG	1 cut(s)	822
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	756, 948
BseDI	CCNNGG	2 cut(s)	392, 481
BseGI	GGATG	2 cut(s)	343, 892
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	3 cut(s)	398, 635, 726
BseMI	GCAATG	1 cut(s)	822
BseNI	ACTGG	4 cut(s)	283, 647, 703, 853
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	3 cut(s)	398, 635, 726
BsmAI	GTCTC	2 cut(s)	63, 222
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	344
Bsp143I	GATC	7 cut(s)	85, 340, 438, 524, 715, 793, 851
Bsp19I	CCATGG	1 cut(s)	392
Bsp68I	TCGCGA	1 cut(s)	594
BspACI	CCGC	1 cut(s)	841
BspANI	GGCC	1 cut(s)	473
BspFNI	CGCG	1 cut(s)	594
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	710, 788, 859
BspTI	CTTAAG	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	822
BsrI	ACTGG	4 cut(s)	283, 647, 703, 853
BssECI	CCNNGG	2 cut(s)	392, 481
BssMI	GATC	7 cut(s)	85, 340, 438, 524, 715, 793, 851
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	756, 948
Bst4CI	ACNGT	2 cut(s)	70, 521
Bst6I	CTCTTC	1 cut(s)	560
BstAFI	CTTAAG	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	725
BstC8I	GCNNGC	2 cut(s)	81, 298
BstDEI	CTNAG	3 cut(s)	216, 377, 954
BstDSI	CCRYGG	2 cut(s)	392, 481
BstENI	CCTNNNNNAGG	1 cut(s)	724
BstF5I	GGATG	2 cut(s)	343, 892
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	7 cut(s)	88, 343, 441, 527, 718, 796, 854
BstMAI	GTCTC	2 cut(s)	63, 222
BstMBI	GATC	7 cut(s)	85, 340, 438, 524, 715, 793, 851
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	2 cut(s)	756, 948
BstSCI	CCNGG	2 cut(s)	754, 946
BstSFI	CTRYAG	2 cut(s)	520, 867
BstUI	CGCG	1 cut(s)	594
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	2 cut(s)	524, 715
BstYI	RGATCY	2 cut(s)	524, 715
BsuRI	GGCC	1 cut(s)	473
BtgI	CCRYGG	2 cut(s)	392, 481
BtsCI	GGATG	2 cut(s)	343, 892
BtsI	GCAGTG	1 cut(s)	910
BtsIMutI	CAGTG	2 cut(s)	448, 910
BtuMI	TCGCGA	1 cut(s)	594
Cac8I	GCNNGC	2 cut(s)	81, 298
Cfr13I	GGNCC	3 cut(s)	14, 626, 740
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	2 cut(s)	370, 530
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	3 cut(s)	76, 301, 393
CviJI	RGCY	7 cut(s)	330, 410, 473, 633, 762, 866, 916
CviKI_1	RGCY	7 cut(s)	330, 410, 473, 633, 762, 866, 916
CviQI	GTAC	2 cut(s)	370, 530
DdeI	CTNAG	3 cut(s)	216, 377, 954
DpnI	GATC	7 cut(s)	87, 342, 440, 526, 717, 795, 853
DpnII	GATC	7 cut(s)	85, 340, 438, 524, 715, 793, 851
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	392
Eco147I	AGGCCT	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	3 cut(s)	14, 626, 740
Eco57I	CTGAAG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	724
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	754, 946
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	3 cut(s)	79, 304, 396
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	3 cut(s)	75, 300, 392
FokI	GGATG	2 cut(s)	350, 899
FspBI	CTAG	3 cut(s)	18, 831, 876
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	1 cut(s)	473
HgaI	GACGC	1 cut(s)	821
Hin1II	CATG	3 cut(s)	79, 304, 396
HincII	GTYRAC	2 cut(s)	459, 846
HindII	GTYRAC	2 cut(s)	459, 846
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	2 cut(s)	347, 908
Hpy166II	GTNNAC	2 cut(s)	459, 846
Hpy188I	TCNGA	2 cut(s)	189, 564
Hpy188III	TCNNGA	9 cut(s)	23, 137, 314, 344, 578, 593, 636, 738, 884
Hpy8I	GTNNAC	2 cut(s)	459, 846
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	3 cut(s)	327, 400, 590
HpyCH4III	ACNGT	2 cut(s)	70, 521
HpyCH4IV	ACGT	2 cut(s)	532, 724
HpyCH4V	TGCA	6 cut(s)	45, 83, 296, 656, 788, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	216, 377, 954
HpySE526I	ACGT	2 cut(s)	532, 724
Hsp92II	CATG	3 cut(s)	79, 304, 396
Kzo9I	GATC	7 cut(s)	85, 340, 438, 524, 715, 793, 851
LweI	GCATC	1 cut(s)	877
MaeI	CTAG	3 cut(s)	18, 831, 876
MaeII	ACGT	2 cut(s)	532, 724
MaeIII	GTNAC	2 cut(s)	348, 578
MalI	GATC	7 cut(s)	87, 342, 440, 526, 717, 795, 853
MboI	GATC	7 cut(s)	85, 340, 438, 524, 715, 793, 851
MboII	GAAGA	3 cut(s)	380, 448, 577
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	2 cut(s)	524, 715
MluCI	AATT	5 cut(s)	271, 465, 497, 733, 894
MlyI	GAGTC	1 cut(s)	356
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	756, 948
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	756, 948
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	7 cut(s)	85, 340, 438, 524, 715, 793, 851
NlaIII	CATG	3 cut(s)	79, 304, 396
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	348, 578
NruI	TCGCGA	1 cut(s)	594
PaeR7I	CTCGAG	1 cut(s)	344
PceI	AGGCCT	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	600
PfeI	GAWTC	1 cut(s)	908
PflFI	GACNNNGTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	635
PfoI	TCCNGGA	2 cut(s)	754, 946
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Ppu21I	YACGTR	1 cut(s)	725
PpuMI	RGGWCCY	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	754, 946
PspGI	CCWGG	2 cut(s)	754, 946
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	3 cut(s)	14, 626, 740
PspPPI	RGGWCCY	1 cut(s)	14
PsuI	RGATCY	2 cut(s)	524, 715
PsyI	GACNNNGTC	1 cut(s)	18
RruI	TCGCGA	1 cut(s)	594
RsaI	GTAC	2 cut(s)	371, 531
RsaNI	GTAC	2 cut(s)	370, 530
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	7 cut(s)	85, 340, 438, 524, 715, 793, 851
Sau96I	GGNCC	3 cut(s)	14, 626, 740
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	756, 948
SfaNI	GCATC	1 cut(s)	877
SfcI	CTRYAG	2 cut(s)	520, 867
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	3 cut(s)	14, 626, 740
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	3 cut(s)	23, 62, 344
SmoI	CTYRAG	3 cut(s)	23, 62, 344
Sse9I	AATT	5 cut(s)	271, 465, 497, 733, 894
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	1 cut(s)	841
SspMI	CTAG	3 cut(s)	18, 831, 876
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	754, 946
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	70, 521
TaiI	ACGT	2 cut(s)	535, 727
TaqI	TCGA	3 cut(s)	100, 207, 345
TaqII	GACCGA	1 cut(s)	757
TasI	AATT	5 cut(s)	271, 465, 497, 733, 894
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	908
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	448, 910
TseFI	GTSAC	2 cut(s)	348, 578
Tsp45I	GTSAC	2 cut(s)	348, 578
TspDTI	ATGAA	2 cut(s)	104, 317
TspRI	CASTG	2 cut(s)	448, 910
Tth111I	GACNNNGTC	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	635
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	3 cut(s)	14, 626, 740
XagI	CCTNNNNNAGG	1 cut(s)	724
XapI	RAATTY	3 cut(s)	271, 497, 733
XhoI	CTCGAG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	3 cut(s)	18, 831, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.