RchiOBHm_Chr3g0458091

branched-chain-amino-acid aminotransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004249
Physical Location & Seq
Reverse (-)
6920536 .. 6923313
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42480

Sequence Viewer

Length: 375 bp
ATGGTAAATACAGACCAGCTAAATCAGTGGCTATGGGACATTATAGATGAGTTTGTGTACCAGTTTCGTAGCTTCTGTGAGCATAGGGCTAAGACGAAGAACAAGACTGAGCAGGAGACTACTTTTCTCAGACTGTTTGATCAAGTTGAGGAGCGCCCTGTGTCGATTGAGGAATTGCTAGAAGCTGATGAAGTGTTCTGTACTGGATATGCTGTCGGTTTATCACCTATAGGCAGCATAACTTACCTGGGAAAAAGGGTGTCTTACCAAGAAACTGGACTTGGTGGAGTTTCTGAGCAACTGTATCAGGCTCTTTCAAATATACAGATGGGTCTTGCAGAAGAAAATAGGGGTTGGATAGTAACCTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

124

Amino Acids

14.3

Weight (kDa)

4.59

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Paf67 PF10255 8 - 45 2.9e-14 RNA polymerase I-associated factor PAF67
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 59, 202
AgsI TTSAA 2 cut(s) 318, 370
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 3 cut(s) 19, 72, 185
AluI AGCT 3 cut(s) 19, 72, 185
Alw26I GTCTC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 234
AspLEI GCGC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 216
BbvI GCAGC 1 cut(s) 246
BccI CCATC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 157
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 247
Bse1I ACTGG 3 cut(s) 61, 208, 280
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 99, 142, 285
BseNI ACTGG 3 cut(s) 61, 208, 280
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 246
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 139
BspCNI CTCAG 3 cut(s) 100, 141, 286
BsrI ACTGG 3 cut(s) 61, 208, 280
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 135, 303
BstDEI CTNAG 4 cut(s) 90, 108, 128, 294
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 32
CfoI GCGC 1 cut(s) 156
Csp6I GTAC 2 cut(s) 58, 201
CviJI RGCY 6 cut(s) 19, 31, 72, 89, 185, 311
CviKI_1 RGCY 6 cut(s) 19, 31, 72, 89, 185, 311
CviQI GTAC 2 cut(s) 58, 201
DdeI CTNAG 4 cut(s) 90, 108, 128, 294
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 246
FaiI YATR 7 cut(s) 34, 44, 84, 210, 230, 239, 323
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FaqI GGGAC 1 cut(s) 50
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 157
HhaI GCGC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HphI GGTGA 1 cut(s) 216
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 131, 295
Hpy8I GTNNAC 1 cut(s) 58
HpyCH4III ACNGT 2 cut(s) 135, 303
HpyCH4V TGCA 1 cut(s) 338
HpyF3I CTNAG 4 cut(s) 90, 108, 128, 294
HspAI GCGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 9 cut(s) 29, 74, 98, 171, 189, 233, 260, 261, 293
Lsp1109I GCAGC 1 cut(s) 246
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 361
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 109, 353
MluCI AATT 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 2 cut(s) 142, 163
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
NdeII GATC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
RsaI GTAC 2 cut(s) 59, 202
RsaNI GTAC 2 cut(s) 58, 201
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 248
SetI ASST 6 cut(s) 21, 74, 187, 229, 249, 368
SfcI CTRYAG 1 cut(s) 228
Sse9I AATT 1 cut(s) 173
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 135, 303
TaqI TCGA 1 cut(s) 164
TasI AATT 1 cut(s) 173
TatI WGTACW 1 cut(s) 200
TscAI CASTG 1 cut(s) 32
TseI GCWGC 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 1 cut(s) 32
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.