Transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom08g09760 |
| rosa_chinensis | RchiOBHm_Chr3g0458091 RchiOBHm_Chr5g0003161 RchiOBHm_Chr5g0007121 RchiOBHm_Chr6g0279321 |
| rosa_laevigata | RLG00000026451 RLG00000029438 |
| rosa_multiflora | Rmu_co8238179.1_g000001 Rmu_co8396177.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00080900 Rroxscaffold_2G00154310 Rroxscaffold_3G00247340 Rroxscaffold_5G00333180 Rroxscaffold_6G00387980 Rroxscaffold_7G00211470 |
| rosa_rugosa | Rorug04G0107200 Rorug04G0148900 Rorug07G0129500 Rorug07G0183300 |
| rosa_samantha | Rh2BG072400 Rh2CG073600 Rh3CG088900 Rh4AG169800 Rh4AG170300 Rh6CG160600 Rh6DG341700 Rh7AG262100 Rh7AG375400 Rh7CG393900 Rh7DG268600 |
| rosa_wichuraiana | Rw2G027560 Rw2G052200 Rw7G022350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 39 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 237 |
| AgsI | TTSAA | 2 cut(s) | 53, 228 |
| AluBI | AGCT | 2 cut(s) | 100, 151 |
| AluI | AGCT | 2 cut(s) | 100, 151 |
| ApoI | RAATTY | 1 cut(s) | 39 |
| AspS9I | GGNCC | 1 cut(s) | 12 |
| AvaII | GGWCC | 1 cut(s) | 12 |
| BbsI | GAAGAC | 1 cut(s) | 285 |
| BfaI | CTAG | 3 cut(s) | 62, 132, 292 |
| BfmI | CTRYAG | 1 cut(s) | 252 |
| Bme18I | GGWCC | 1 cut(s) | 12 |
| BmgT120I | GGNCC | 1 cut(s) | 12 |
| BpiI | GAAGAC | 1 cut(s) | 285 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 237 |
| Bse1I | ACTGG | 1 cut(s) | 15 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 237 |
| BseNI | ACTGG | 1 cut(s) | 15 |
| BseYI | CCCAGC | 1 cut(s) | 24 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 237 |
| BsrI | ACTGG | 1 cut(s) | 15 |
| Bst4CI | ACNGT | 1 cut(s) | 87 |
| Bst6I | CTCTTC | 4 cut(s) | 60, 66, 102, 229 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 128 |
| BstSFI | CTRYAG | 1 cut(s) | 252 |
| BstV2I | GAAGAC | 1 cut(s) | 285 |
| Cfr13I | GGNCC | 1 cut(s) | 12 |
| CviAII | CATG | 1 cut(s) | 119 |
| CviJI | RGCY | 5 cut(s) | 61, 100, 131, 151, 217 |
| CviKI_1 | RGCY | 5 cut(s) | 61, 100, 131, 151, 217 |
| Eam1104I | CTCTTC | 4 cut(s) | 60, 66, 102, 229 |
| EarI | CTCTTC | 4 cut(s) | 60, 66, 102, 229 |
| Eco47I | GGWCC | 1 cut(s) | 12 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| EcoT22I | ATGCAT | 1 cut(s) | 171 |
| FaeI | CATG | 1 cut(s) | 122 |
| FaiI | YATR | 6 cut(s) | 95, 120, 156, 167, 205, 236 |
| FatI | CATG | 1 cut(s) | 118 |
| FspBI | CTAG | 3 cut(s) | 62, 132, 292 |
| GsaI | CCCAGC | 1 cut(s) | 28 |
| Hin1II | CATG | 1 cut(s) | 122 |
| HindIII | AAGCTT | 1 cut(s) | 149 |
| HinfI | GANTC | 2 cut(s) | 257, 269 |
| Hpy188I | TCNGA | 2 cut(s) | 45, 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 87 |
| HpyCH4V | TGCA | 3 cut(s) | 169, 194, 266 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 128 |
| Hsp92II | CATG | 1 cut(s) | 122 |
| LmnI | GCTCC | 1 cut(s) | 97 |
| LpnPI | CCDG | 3 cut(s) | 28, 38, 244 |
| MaeI | CTAG | 3 cut(s) | 62, 132, 292 |
| MboII | GAAGA | 6 cut(s) | 44, 77, 83, 119, 216, 290 |
| MluCI | AATT | 2 cut(s) | 39, 195 |
| MlyI | GAGTC | 1 cut(s) | 263 |
| MnlI | CCTC | 6 cut(s) | 39, 51, 61, 67, 103, 151 |
| Mph1103I | ATGCAT | 1 cut(s) | 171 |
| MseI | TTAA | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 128 |
| NlaIII | CATG | 1 cut(s) | 122 |
| NsiI | ATGCAT | 1 cut(s) | 171 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PleI | GAGTC | 1 cut(s) | 263 |
| PpsI | GAGTC | 1 cut(s) | 263 |
| PspFI | CCCAGC | 1 cut(s) | 24 |
| PspPI | GGNCC | 1 cut(s) | 12 |
| SaqAI | TTAA | 1 cut(s) | 89 |
| Sau96I | GGNCC | 1 cut(s) | 12 |
| SchI | GAGTC | 1 cut(s) | 263 |
| SetI | ASST | 5 cut(s) | 102, 114, 153, 162, 233 |
| SfcI | CTRYAG | 1 cut(s) | 252 |
| SinI | GGWCC | 1 cut(s) | 12 |
| Sse9I | AATT | 2 cut(s) | 39, 195 |
| SspMI | CTAG | 3 cut(s) | 62, 132, 292 |
| TaaI | ACNGT | 1 cut(s) | 87 |
| TaqI | TCGA | 1 cut(s) | 212 |
| TasI | AATT | 2 cut(s) | 39, 195 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| Tru1I | TTAA | 1 cut(s) | 89 |
| Tru9I | TTAA | 1 cut(s) | 89 |
| TspDTI | ATGAA | 2 cut(s) | 17, 51 |
| VpaK11BI | GGWCC | 1 cut(s) | 12 |
| XapI | RAATTY | 1 cut(s) | 39 |
| XspI | CTAG | 3 cut(s) | 62, 132, 292 |
| Zsp2I | ATGCAT | 1 cut(s) | 171 |