Rroxscaffold_3G00247340

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004249
Physical Location & Seq
Forward (+)
40676433 .. 40691981
15549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247340.1

Sequence Viewer

Length: 423 bp
ATGCTTGCCCGAAATCACTTACAACGACTTGACGGTGAACTCGAGGTTCGTGGGGCGGAGGCGAGACGCATCGGCAGCACCGAACCTCCTCAAGAACTTGTCGTTGCTCCTCTCTACCCCGTGCCACTTCAGCTAAATCAATGGCTATGGGACATTATGGATGAGTTTGTGTACCAGTTTCAGAGCTTCTGTCAGTATAGGGCTAAGATGAAGAACAAGACTGAGCAGGAGACTACTTTTCTCAGACAGTTTGATCAAGGTGTGGTGCACAGAGATGTTCAGCCCGGAAACTTCCTCTTCTCTCAGAAGCTAAGCAAAGGTTACCTGATTGATTTCAACCTTGCCATGTATCACAAGCACACTACTCTACACAAACTCGATCACCTTCCCGATTCTCCCGCTTGCTCTCCTTCTATGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Paf67

Protein Analysis

140

Amino Acids

16.38

Weight (kDa)

6.58

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Paf67 PF10255 40 - 86 1.1e-16 RNA polymerase I-associated factor PAF67
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 399
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 1 cut(s) 337
AluBI AGCT 3 cut(s) 133, 186, 310
AluI AGCT 3 cut(s) 133, 186, 310
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 58, 224
Alw44I GTGCAC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 41
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 2 cut(s) 47, 374
AvaI CYCGRG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 87
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 58, 224
BisI GCNGC 1 cut(s) 76
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 285
BmeT110I CYCGRG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bse1I ACTGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 166
BseMII CTCAG 3 cut(s) 213, 256, 317
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 2 cut(s) 78, 99
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 58, 224
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 253, 379
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 2 cut(s) 56, 399
BspCNI CTCAG 3 cut(s) 214, 255, 316
BsrI ACTGG 1 cut(s) 175
BssMI GATC 2 cut(s) 253, 379
Bst4CI ACNGT 2 cut(s) 35, 249
Bst6I CTCTTC 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 6, 403
BstDEI CTNAG 5 cut(s) 204, 222, 242, 303, 311
BstEII GGTNACC 1 cut(s) 320
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 256, 382
BstMAI GTCTC 2 cut(s) 58, 224
BstMBI GATC 2 cut(s) 253, 379
BstMWI GCNNNNNNNGC 2 cut(s) 75, 130
BstPI GGTNACC 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 283
BstSLI GKGCMC 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 6, 403
CseI GACGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 346
CviJI RGCY 6 cut(s) 133, 145, 186, 203, 283, 310
CviKI_1 RGCY 6 cut(s) 133, 145, 186, 203, 283, 310
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 5 cut(s) 204, 222, 242, 303, 311
DpnI GATC 2 cut(s) 255, 381
DpnII GATC 2 cut(s) 253, 379
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 41
Eco91I GGTNACC 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 320
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 1 cut(s) 349
FaiI YATR 5 cut(s) 148, 158, 198, 347, 416
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 345
FauI CCCGC 1 cut(s) 406
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 76
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 75
Hin1II CATG 1 cut(s) 349
HinfI GANTC 1 cut(s) 392
HpaII CCGG 1 cut(s) 285
HphI GGTGA 2 cut(s) 47, 374
Hpy166II GTNNAC 3 cut(s) 38, 172, 268
Hpy188I TCNGA 3 cut(s) 183, 245, 306
Hpy188III TCNNGA 2 cut(s) 92, 389
Hpy8I GTNNAC 3 cut(s) 38, 172, 268
HpyAV CCTTC 2 cut(s) 395, 420
HpyCH4III ACNGT 2 cut(s) 35, 249
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 130
HpyF3I CTNAG 5 cut(s) 204, 222, 242, 303, 311
Hsp92II CATG 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 253, 379
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 4 cut(s) 188, 212, 298, 338
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 255, 381
MboI GATC 2 cut(s) 253, 379
MboII GAAGA 2 cut(s) 223, 289
MhlI GDGCHC 1 cut(s) 270
MnlI CCTC 6 cut(s) 37, 52, 96, 99, 120, 305
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 75, 130
NciI CCSGG 1 cut(s) 285
NdeII GATC 2 cut(s) 253, 379
NlaIII CATG 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 78
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 1 cut(s) 77
PspEI GGTNACC 1 cut(s) 320
PspXI VCTCGAGB 1 cut(s) 41
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 273
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 2 cut(s) 253, 379
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 41
SlaI CTCGAG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 2 cut(s) 41, 90
SmoI CTYRAG 2 cut(s) 41, 90
SsiI CCGC 2 cut(s) 56, 399
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 35, 249
TaqI TCGA 2 cut(s) 42, 378
TfiI GAWTC 1 cut(s) 392
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 224
VneI GTGCAC 1 cut(s) 266
XhoI CTCGAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.