Rh7AG375400

RNA polymerase-associated protein CTR9 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004249
Physical Location & Seq
Reverse (-)
48638935 .. 48642419
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG375400.1

Sequence Viewer

Length: 192 bp
ATGGCCTTAAATGATCTGGCGAACTATTTTTTCTTCACTGGTCAACACTCTGTAGTTGAGCAACTAACTGAGACAGCACTTGCTATCACCAACCATGGACCAACAAGGTCACATTCCTACTACAGTTTAGCACGACCTTACCATAGCAAGGGACTGGCTATGATAATGCCACTTCTGAAGTTGCTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000785 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_16 TPR_2 TPR_6 TPR_8

Protein Analysis

63

Amino Acids

7.13

Weight (kDa)

8.17

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 65
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 65
BfmI CTRYAG 2 cut(s) 51, 121
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 2 cut(s) 43, 159
BseDI CCNNGG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 43, 159
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 165
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 13
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 61
BsrI ACTGG 2 cut(s) 43, 159
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 94
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 1 cut(s) 13
BstSFI CTRYAG 2 cut(s) 51, 121
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 98
CviAII CATG 1 cut(s) 95
CviJI RGCY 2 cut(s) 5, 158
CviKI_1 RGCY 2 cut(s) 5, 158
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 98
FaiI YATR 3 cut(s) 96, 144, 161
FaqI GGGAC 1 cut(s) 165
FatI CATG 1 cut(s) 94
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 98
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 177
Hpy8I GTNNAC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 1 cut(s) 98
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 2, 24, 140
MaeIII GTNAC 1 cut(s) 108
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 1 cut(s) 25
MseI TTAA 1 cut(s) 8
NcoI CCATGG 1 cut(s) 94
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 98
SetI ASST 2 cut(s) 110, 139
SfcI CTRYAG 2 cut(s) 51, 121
SgeI CNNG 8 cut(s) 29, 51, 92, 107, 117, 144, 160, 167
SinI GGWCC 1 cut(s) 98
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 125
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 108
TspRI CASTG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.