Rh4AG170300

serine threonine-protein kinase cdc7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004249
Physical Location & Seq
Forward (+)
42904978 .. 42917750
12773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG170300.1

Sequence Viewer

Length: 231 bp
ATGGAATGGTCAAATCTCAATCAATCCACACGAACAAGGCTGGGGCACGTGCACAGAGATATTAAGCCCGGAAACTTCCTCTTCTCTCAGAAGCTAAGCAAAGGTTACCTGATTGATTTCAACCTTGCCATGCAGTCTAATGTCAGTGATGATGGAATAGCTGAACACATTAAAGAAGGAAATATTCAAAATCACACAGCTAAGAAGGATATCCTCTTATCCTATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000082 GO:0000278 GO:0000724 GO:0000725 GO:0000727 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006275 GO:0006281 GO:0006302 GO:0006310 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006909 GO:0006950 GO:0006974 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0008284 GO:0008360 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010389 GO:0010556 GO:0010557 GO:0010564 GO:0010571 GO:0010604 GO:0010948 GO:0010971 GO:0015630 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0022603 GO:0022604 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0033262 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044843 GO:0045171 GO:0045740 GO:0045786 GO:0045787 GO:0045931 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070316 GO:0070317 GO:0071704 GO:0072686 GO:0080090 GO:0090068 GO:0090304 GO:0090329 GO:0098657 GO:0140096 GO:1901360 GO:1901564 GO:1901576 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751 GO:1903047 GO:2000105 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 map04110 map04111 map04113
Pfam Domains
Protein Families
Pkinase

Protein Analysis

76

Amino Acids

8.73

Weight (kDa)

8.11

Isoelectric Point (pI)

19.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 121, 188
AluBI AGCT 3 cut(s) 94, 161, 200
AluI AGCT 3 cut(s) 94, 161, 200
Alw21I GWGCWC 1 cut(s) 54
Alw44I GTGCAC 1 cut(s) 50
ApaLI GTGCAC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 69
BaeGI GKGCMC 2 cut(s) 48, 54
BbrPI CACGTG 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 54
BccI CCATC 1 cut(s) 146
BcnI CCSGG 1 cut(s) 69
BlpI GCTNAGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 49
BseMII CTCAG 1 cut(s) 101
BseSI GKGCMC 2 cut(s) 48, 54
BseYI CCCAGC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 48, 54
Bsp1720I GCTNAGC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 87, 95, 201
BstEII GGTNACC 1 cut(s) 104
BstPI GGTNACC 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 67
BstSLI GKGCMC 2 cut(s) 48, 54
BtsIMutI CAGTG 1 cut(s) 151
CviAII CATG 1 cut(s) 130
CviJI RGCY 5 cut(s) 40, 67, 94, 161, 200
CviKI_1 RGCY 5 cut(s) 40, 67, 94, 161, 200
DdeI CTNAG 3 cut(s) 87, 95, 201
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 211
Eco72I CACGTG 1 cut(s) 49
Eco91I GGTNACC 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 104
EcoRV GATATC 1 cut(s) 211
FaeI CATG 1 cut(s) 133
FaiI YATR 1 cut(s) 131
FatI CATG 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 44
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 133
HpaII CCGG 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 170, 199
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 52, 133
HpyF3I CTNAG 3 cut(s) 87, 95, 201
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 1 cut(s) 133
LpnPI CCDG 3 cut(s) 26, 82, 122
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 104
MboII GAAGA 1 cut(s) 73
MhlI GDGCHC 2 cut(s) 48, 54
MnlI CCTC 2 cut(s) 89, 224
MseI TTAA 2 cut(s) 63, 171
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 69
NciI CCSGG 1 cut(s) 69
NlaIII CATG 1 cut(s) 133
PmaCI CACGTG 1 cut(s) 49
PmlI CACGTG 1 cut(s) 49
Ppu21I YACGTR 1 cut(s) 49
PspCI CACGTG 1 cut(s) 49
PspEI GGTNACC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 40
SaqAI TTAA 2 cut(s) 63, 171
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 2 cut(s) 48, 54
SetI ASST 7 cut(s) 51, 96, 106, 111, 126, 163, 202
SspI AATATT 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 67
TaiI ACGT 1 cut(s) 51
Tru1I TTAA 2 cut(s) 63, 171
Tru9I TTAA 2 cut(s) 63, 171
TscAI CASTG 1 cut(s) 151
TspRI CASTG 1 cut(s) 151
VneI GTGCAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.