Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004249

Physical Location & Seq

Genomic Coordinates Forward (+)

43263130 .. 43268839

Gene Structure 5710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G027560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGATAATGTCTTACCTATATGCTGAACATGCAGCTGGGAAAACCAAAGTTGGCATTGACTTGGAGGGAAGTGTTTGCAAAGATGTTGAAGGTATGAGATTGATAATCCATAACTTGGGAAGGTTCTTCTCACACAGGGACGTTAAGTGCTCGACTTTGAGTTCCTTCTACTTTGGTTCTGGAGGTGTAGTCTTGGCTTCTCAAGATGGAAAGATTGTGTGTGAGAACACTCTAGATGCACCGTTGGATATTGTATTCCTTAAAAAACTAACTCAGTGTATAATTGTTACTAACCAACATTTTGTCTATTCCTCAATGCTTCAAAATGCGAGTGAAGACAAGGATAGCAAAGGCACTACAAAATTGCATCAAGTGCATGCCAAGCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko00380 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map00380 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

vATP-synt_E

Protein Analysis

131

Amino Acids

14.5

Weight (kDa)

6.58

Isoelectric Point (pI)

23.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
vATP-synt_E	PF01991	61 - 92	3.8e-06	ATP synthase (E/31 kDa) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004249)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g09760
rosa_chinensis	RchiOBHm_Chr3g0458091 RchiOBHm_Chr5g0003161 RchiOBHm_Chr5g0007121 RchiOBHm_Chr6g0279321
rosa_laevigata	RLG00000026451 RLG00000029438
rosa_multiflora	Rmu_co8238179.1_g000001 Rmu_co8396177.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080900 Rroxscaffold_2G00154310 Rroxscaffold_3G00247340 Rroxscaffold_5G00333180 Rroxscaffold_6G00387980 Rroxscaffold_7G00211470
rosa_rugosa	Rorug04G0107200 Rorug04G0148900 Rorug07G0129500 Rorug07G0183300
rosa_samantha	Rh2BG072400 Rh2CG073600 Rh3CG088900 Rh4AG169800 Rh4AG170300 Rh6CG160600 Rh6DG341700 Rh7AG262100 Rh7AG375400 Rh7CG393900 Rh7DG268600
rosa_wichuraiana	Rw2G027560 Rw2G052200 Rw7G022350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	92, 326
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw21I	GWGCWC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	236
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmsI	GCATC	2 cut(s)	229, 379
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 376, 385
BstNSI	RCATGY	2 cut(s)	35, 383
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	381
CviAII	CATG	2 cut(s)	32, 380
CviJI	RGCY	2 cut(s)	38, 200
CviKI_1	RGCY	2 cut(s)	38, 200
DdeI	CTNAG	1 cut(s)	276
FaeI	CATG	2 cut(s)	35, 383
FaiI	YATR	7 cut(s)	22, 24, 33, 98, 114, 284, 381
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	31, 379
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	204
Hin1II	CATG	2 cut(s)	35, 383
Hpy188III	TCNNGA	3 cut(s)	183, 206, 236
HpyAV	CCTTC	3 cut(s)	86, 117, 178
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	5 cut(s)	35, 81, 242, 370, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 376, 385
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	35, 383
LpnPI	CCDG	3 cut(s)	24, 124, 168
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	2 cut(s)	229, 379
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	289
MboII	GAAGA	2 cut(s)	121, 350
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	2 cut(s)	285, 365
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	3 cut(s)	61, 179, 325
MseI	TTAA	2 cut(s)	147, 264
MspA1I	CMGCKG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	32, 376, 385
NlaIII	CATG	2 cut(s)	35, 383
NspI	RCATGY	2 cut(s)	35, 383
PaeI	GCATGC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	147, 264
SatI	GCNGC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	6 cut(s)	21, 40, 97, 128, 147, 190
SfaNI	GCATC	2 cut(s)	229, 379
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	2 cut(s)	285, 365
SspMI	CTAG	1 cut(s)	236
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	285, 365
Tru1I	TTAA	2 cut(s)	147, 264
Tru9I	TTAA	2 cut(s)	147, 264
TscAI	CASTG	1 cut(s)	284
TseI	GCWGC	1 cut(s)	35
TspRI	CASTG	1 cut(s)	284
Van91I	CCANNNNNTGG	1 cut(s)	118
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	2 cut(s)	35, 383
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.