Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004249

Physical Location & Seq

Genomic Coordinates Forward (+)

54447585 .. 54453431

Gene Structure 5847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG341700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCCTTAAATGATCTGGCCAACTATTTTTTCTTCACTGGTCAACACTCTGTAGTAACTGAGACAGCACTTGCTATCACCAACCATGGACCAACAAGTCATTTTATGGGGGAAGACCTCCAATCCTTGAGTATGAAAGAGCTTCAGAATTTGGAGCGGCTACTTGATTCTGCTCTGAAGCACATAAGGTCTAGAAGTTCTCCACCTCAAGAAAAGAGGCTAGAAGAGGAAGATGCAGAAGCACAGTTAAATATGGAGCTCACTAAAGGGGCTGCTCATGCTAAAATGGCTAGAAACTTACGCAACAAGAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

105

Amino Acids

11.82

Weight (kDa)

6.51

Isoelectric Point (pI)

65.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	34 - 67	6.2e-10	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004249)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g09760
rosa_chinensis	RchiOBHm_Chr3g0458091 RchiOBHm_Chr5g0003161 RchiOBHm_Chr5g0007121 RchiOBHm_Chr6g0279321
rosa_laevigata	RLG00000026451 RLG00000029438
rosa_multiflora	Rmu_co8238179.1_g000001 Rmu_co8396177.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080900 Rroxscaffold_2G00154310 Rroxscaffold_3G00247340 Rroxscaffold_5G00333180 Rroxscaffold_6G00387980 Rroxscaffold_7G00211470
rosa_rugosa	Rorug04G0107200 Rorug04G0148900 Rorug07G0129500 Rorug07G0183300
rosa_samantha	Rh2BG072400 Rh2CG073600 Rh3CG088900 Rh4AG169800 Rh4AG170300 Rh6CG160600 Rh6DG341700 Rh7AG262100 Rh7AG375400 Rh7CG393900 Rh7DG268600
rosa_wichuraiana	Rw2G027560 Rw2G052200 Rw7G022350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	96
AccBSI	CCGCTC	1 cut(s)	157
AciI	CCGC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	2 cut(s)	128, 197
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	3 cut(s)	142, 259, 314
AluI	AGCT	3 cut(s)	142, 259, 314
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	3, 18
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	3 cut(s)	192, 221, 291
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	158, 273
BlsI	GCNGC	2 cut(s)	159, 274
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	120
BpuEI	CTTGAG	2 cut(s)	148, 192
BsaJI	CCNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	2 cut(s)	5, 20
BsiHKAI	GWGCWC	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	5, 20
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	2 cut(s)	5, 20
BspCNI	CTCAG	1 cut(s)	52
BsrBI	CCGCTC	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	85
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 287
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	5, 20
BtgI	CCRYGG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	2 cut(s)	86, 278
CviJI	RGCY	9 cut(s)	5, 20, 142, 160, 220, 259, 272, 290, 314
CviKI_1	RGCY	9 cut(s)	5, 20, 142, 160, 220, 259, 272, 290, 314
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DrdI	GACNNNNNNGTC	1 cut(s)	96
DseDI	GACNNNNNNGTC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	128, 197
EcoICRI	GAGCTC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	2 cut(s)	89, 281
FaiI	YATR	6 cut(s)	87, 107, 134, 185, 254, 279
FatI	CATG	2 cut(s)	85, 277
Fnu4HI	GCNGC	2 cut(s)	158, 273
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	158, 273
FspBI	CTAG	3 cut(s)	192, 221, 291
GluI	GCNGC	2 cut(s)	158, 273
HaeIII	GGCC	2 cut(s)	5, 20
Hin1II	CATG	2 cut(s)	89, 281
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	1 cut(s)	167
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	147, 177
Hpy188III	TCNNGA	2 cut(s)	192, 209
Hpy8I	GTNNAC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 287
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	89, 281
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	154, 256
LpnPI	CCDG	2 cut(s)	2, 24
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	192, 221, 291
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	15
MbiI	CCGCTC	1 cut(s)	157
MboI	GATC	1 cut(s)	13
MboII	GAAGA	4 cut(s)	25, 125, 236, 242
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	1 cut(s)	148
MluNI	TGGCCA	1 cut(s)	20
MnlI	CCTC	4 cut(s)	128, 210, 216, 220
Mox20I	TGGCCA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	3 cut(s)	8, 248, 316
Msp20I	TGGCCA	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	278, 287
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	89, 281
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	159, 274
Psp124BI	GAGCTC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	8, 248, 316
SatI	GCNGC	2 cut(s)	158, 273
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	6 cut(s)	120, 144, 191, 208, 261, 316
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	2 cut(s)	127, 207
SmoI	CTYRAG	2 cut(s)	127, 207
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	3 cut(s)	192, 221, 291
SstI	GAGCTC	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	246
TasI	AATT	1 cut(s)	148
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	8, 248, 316
Tru9I	TTAA	3 cut(s)	8, 248, 316
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	148
XbaI	TCTAGA	1 cut(s)	191
XspI	CTAG	3 cut(s)	192, 221, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.