Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396177.1

Orthogroup ID

OG0004249

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1149

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396177.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgactgtggcaattggctctctaaaagtctttggaaatggaatgttagcaagagcatgcgttgagtttaatcgtgggcagtattctgattcattggagctgtacaagagagccctgcaagtgaatcccaattgtcctgcggctgtgagacttggcattggtctctgtcgttacaaaatgggtcaatttgaaaaagcttggcaggcatttcagcgggttttacagttagatcctgaaaatgttgaggctcttgttgctcttgcaattttggatttgcatactaatgcagctgctggaataaggaaaggaatggaaaaaatgcagagagcttttgagctatacccttattgtgcaatggccttaaactatctggcaaaccattttttctacactggtcagcactttttagttgagcaacttactgagactgcacttgctgtcaccaaccatggaccaacaaagtcgcattcctactacaatttagcacgatcttaccatagcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0000785 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_2 TPR_6 TPR_8

Protein Analysis

168

Amino Acids

18.9

Weight (kDa)

9.06

Isoelectric Point (pI)

24.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004249)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g09760
rosa_chinensis	RchiOBHm_Chr3g0458091 RchiOBHm_Chr5g0003161 RchiOBHm_Chr5g0007121 RchiOBHm_Chr6g0279321
rosa_laevigata	RLG00000026451 RLG00000029438
rosa_multiflora	Rmu_co8238179.1_g000001 Rmu_co8396177.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080900 Rroxscaffold_2G00154310 Rroxscaffold_3G00247340 Rroxscaffold_5G00333180 Rroxscaffold_6G00387980 Rroxscaffold_7G00211470
rosa_rugosa	Rorug04G0107200 Rorug04G0148900 Rorug07G0129500 Rorug07G0183300
rosa_samantha	Rh2BG072400 Rh2CG073600 Rh3CG088900 Rh4AG169800 Rh4AG170300 Rh6CG160600 Rh6DG341700 Rh7AG262100 Rh7AG375400 Rh7CG393900 Rh7DG268600
rosa_wichuraiana	Rw2G027560 Rw2G052200 Rw7G022350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	140, 214
AclWI	GGATC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	5 cut(s)	100, 197, 290, 329, 337
AluI	AGCT	5 cut(s)	100, 197, 290, 329, 337
Alw26I	GTCTC	3 cut(s)	142, 167, 419
AlwI	GGATC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	287, 290
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	277, 299
BcoDI	GTCTC	3 cut(s)	142, 167, 419
BisI	GCNGC	3 cut(s)	141, 288, 291
BlsI	GCNGC	3 cut(s)	142, 289, 292
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	277, 299
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	359
BsmAI	GTCTC	3 cut(s)	142, 167, 419
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	359
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	229, 488
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	2 cut(s)	140, 214
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	415
BspPI	GGATC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	229, 488
BssT1I	CCWWGG	1 cut(s)	448
Bst4CI	ACNGT	2 cut(s)	7, 225
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	58, 204
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	1 cut(s)	448
BstKTI	GATC	2 cut(s)	232, 491
BstMAI	GTCTC	3 cut(s)	142, 167, 419
BstMBI	GATC	2 cut(s)	229, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 254
BstNSI	RCATGY	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	277, 299
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	58, 204
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	57, 449
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	2 cut(s)	231, 490
DpnII	GATC	2 cut(s)	229, 488
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	60, 452
FaiI	YATR	5 cut(s)	58, 279, 340, 450, 498
FatI	CATG	2 cut(s)	56, 448
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	141, 288, 291
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	3 cut(s)	141, 288, 291
GluI	GCNGC	3 cut(s)	141, 288, 291
HaeIII	GGCC	1 cut(s)	359
Hin1II	CATG	2 cut(s)	60, 452
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	2 cut(s)	89, 124
HphI	GGTGA	1 cut(s)	433
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	7, 225
HpyCH4V	TGCA	7 cut(s)	118, 263, 277, 287, 322, 353, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 254
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	60, 452
Kzo9I	GATC	2 cut(s)	229, 488
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	7 cut(s)	128, 150, 188, 246, 279, 356, 378
Lsp1109I	GCAGC	2 cut(s)	277, 299
MaeIII	GTNAC	2 cut(s)	170, 439
MalI	GATC	2 cut(s)	231, 490
MboI	GATC	2 cut(s)	229, 488
MfeI	CAATTG	2 cut(s)	12, 130
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	5 cut(s)	12, 130, 185, 264, 478
MnlI	CCTC	1 cut(s)	238
MseI	TTAA	2 cut(s)	69, 362
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	214, 290
MunI	CAATTG	2 cut(s)	12, 130
Mva1269I	GAATGC	1 cut(s)	466
MwoI	GCNNNNNNNGC	2 cut(s)	203, 254
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	2 cut(s)	229, 488
NlaIII	CATG	2 cut(s)	60, 452
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	60
PaeI	GCATGC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	2 cut(s)	89, 124
PkrI	GCNGC	3 cut(s)	142, 289, 292
PspPI	GGNCC	1 cut(s)	452
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	69, 362
SatI	GCNGC	3 cut(s)	141, 288, 291
Sau3AI	GATC	2 cut(s)	229, 488
Sau96I	GGNCC	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	5 cut(s)	102, 199, 292, 331, 339
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	282
SphI	GCATGC	1 cut(s)	60
Sse9I	AATT	5 cut(s)	12, 130, 185, 264, 478
SsiI	CCGC	2 cut(s)	140, 214
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	7, 225
TasI	AATT	5 cut(s)	12, 130, 185, 264, 478
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	89, 124
Tru1I	TTAA	2 cut(s)	69, 362
Tru9I	TTAA	2 cut(s)	69, 362
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	287, 290
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	452
XceI	RCATGY	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.