Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004249

Physical Location & Seq

Genomic Coordinates Forward (+)

5469108 .. 5495895

Gene Structure 26788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG072400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCTGGATGCACCCAAAAACCCATCAAATCATCCCCCGGCGTCGACAAATCTCCCGATTCTAAGATATATAATCAAGGAAAGAGGAGAATGAATAGCAGGACCAGTCTATCCCAGCGAGAAGATGAAATTCGGAGGATTGAAAAGAGGCTAGAAGAGGAAGAGGCAGAAGCACAGTTAAATATGGAGCTTACTGAAGAGGTTGCTCATGCTAAAATGGCTAGAAACTTACGCAACAAGGTTCTGTCAAAGTATATGGCTGCCATGAATTACAAGGAGTTGATTGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

97

Amino Acids

11.24

Weight (kDa)

8.73

Isoelectric Point (pI)

81.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004249)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g09760
rosa_chinensis	RchiOBHm_Chr3g0458091 RchiOBHm_Chr5g0003161 RchiOBHm_Chr5g0007121 RchiOBHm_Chr6g0279321
rosa_laevigata	RLG00000026451 RLG00000029438
rosa_multiflora	Rmu_co8238179.1_g000001 Rmu_co8396177.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080900 Rroxscaffold_2G00154310 Rroxscaffold_3G00247340 Rroxscaffold_5G00333180 Rroxscaffold_6G00387980 Rroxscaffold_7G00211470
rosa_rugosa	Rorug04G0107200 Rorug04G0148900 Rorug07G0129500 Rorug07G0183300
rosa_samantha	Rh2BG072400 Rh2CG073600 Rh3CG088900 Rh4AG169800 Rh4AG170300 Rh6CG160600 Rh6DG341700 Rh7AG262100 Rh7AG375400 Rh7CG393900 Rh7DG268600
rosa_wichuraiana	Rw2G027560 Rw2G052200 Rw7G022350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	143
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	39
BfaI	CTAG	2 cut(s)	152, 222
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	14, 32
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	3 cut(s)	150, 156, 192
BstACI	GRCGYC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	14, 32
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	14, 32
Cfr13I	GGNCC	1 cut(s)	102
CseI	GACGC	1 cut(s)	31
CviAII	CATG	2 cut(s)	209, 265
CviJI	RGCY	5 cut(s)	5, 151, 190, 221, 260
CviKI_1	RGCY	5 cut(s)	5, 151, 190, 221, 260
DdeI	CTNAG	1 cut(s)	63
Eam1104I	CTCTTC	3 cut(s)	150, 156, 192
EarI	CTCTTC	3 cut(s)	150, 156, 192
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	216
FaeI	CATG	2 cut(s)	212, 268
FaiI	YATR	7 cut(s)	70, 72, 185, 210, 255, 257, 266
FatI	CATG	2 cut(s)	208, 264
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	2 cut(s)	19, 21
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	152, 222
GluI	GCNGC	1 cut(s)	261
GsaI	CCCAGC	1 cut(s)	118
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	212, 268
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	39
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	212, 268
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	4 cut(s)	52, 85, 118, 128
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	152, 222
MboII	GAAGA	4 cut(s)	134, 167, 173, 209
MluCI	AATT	2 cut(s)	129, 268
MnlI	CCTC	6 cut(s)	78, 129, 141, 151, 157, 193
MseI	TTAA	1 cut(s)	179
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	39
NlaIII	CATG	2 cut(s)	212, 268
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	102
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	3 cut(s)	192, 204, 243
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	2 cut(s)	129, 268
SspMI	CTAG	2 cut(s)	152, 222
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	129, 268
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	107, 141, 281
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	2 cut(s)	152, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.