Rh7DG268600

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004249
Physical Location & Seq
Reverse (-)
28699469 .. 28700310
842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG268600.1

Sequence Viewer

Length: 393 bp
ATGTTTAGAGCTCTAGCATGCTTGCATAAACAGGGTGTGGTGCACAGAGATGTTAAGCCCGGAAACTTCCTCTTCTCTCAGAAGCTAAGCAAAGGTTACCTGATTAATTTCAACCTTGCCATGGTTTGGCAAACGGCTTCTCTGTGCCATTTGGTTCACACAGCAGCTCTTCTTGCTGCGCCCCTCACAAAAAACCCCAATATTGTGAGTTCAAAGTTGAAATCTTTATTGATTCTTAGCTACCTTTTTTGGTTGTTTAGCATTTCAGAAGCATATTTTTATAGCTCCTGTCTTTCTTGCTGCTATAAAGTAAATTCAAGTAATGATAGAAAAGGTCTGAGACTCTTTTTAACATTTTGGAGGTGTAAAATTGAGCAGTCTTTGCTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 map04110 map04111 map04113
Pfam Domains
Protein Families
Pkinase

Protein Analysis

130

Amino Acids

14.85

Weight (kDa)

9.7

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 60 3.4e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 126
AcsI RAATTY 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 121, 126
AgsI TTSAA 4 cut(s) 112, 213, 220, 318
AluBI AGCT 5 cut(s) 11, 85, 167, 240, 285
AluI AGCT 5 cut(s) 11, 85, 167, 240, 285
Alw21I GWGCWC 2 cut(s) 13, 45
Alw26I GTCTC 1 cut(s) 334
Alw44I GTGCAC 1 cut(s) 41
ApaLI GTGCAC 1 cut(s) 41
ApeKI GCWGC 3 cut(s) 164, 176, 300
ApoI RAATTY 1 cut(s) 313
AseI ATTAAT 1 cut(s) 105
AspLEI GCGC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 2 cut(s) 13, 45
BbvI GCAGC 3 cut(s) 163, 176, 287
BceAI ACGGC 1 cut(s) 150
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 1 cut(s) 14
BisI GCNGC 3 cut(s) 165, 177, 301
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 3 cut(s) 166, 178, 302
Bme1390I CCNGG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 60
Bpu1102I GCTNAGC 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 126
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 121, 126
BseMII CTCAG 2 cut(s) 92, 329
BseSI GKGCMC 1 cut(s) 45
BseXI GCAGC 3 cut(s) 163, 176, 287
BsiHKAI GWGCWC 2 cut(s) 13, 45
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 121, 126
BsmAI GTCTC 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 13, 45
Bsp1720I GCTNAGC 1 cut(s) 86
Bsp19I CCATGG 1 cut(s) 120
BspCNI CTCAG 2 cut(s) 91, 330
BspQI GCTCTTC 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 120
Bst6I CTCTTC 2 cut(s) 77, 174
BstAPI GCANNNNNTGC 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 19, 23
BstDEI CTNAG 4 cut(s) 78, 86, 236, 338
BstDSI CCRYGG 1 cut(s) 120
BstEII GGTNACC 1 cut(s) 95
BstHHI GCGC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 173, 382
BstNSI RCATGY 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 58
BstSLI GKGCMC 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 163, 176, 287
BtgI CCRYGG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 19, 23
CfoI GCGC 1 cut(s) 181
CviAII CATG 2 cut(s) 18, 121
CviJI RGCY 7 cut(s) 11, 58, 85, 137, 167, 240, 285
CviKI_1 RGCY 7 cut(s) 11, 58, 85, 137, 167, 240, 285
DdeI CTNAG 4 cut(s) 78, 86, 236, 338
Eam1104I CTCTTC 2 cut(s) 77, 174
EarI CTCTTC 2 cut(s) 77, 174
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 11
Eco91I GGTNACC 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 21, 124
FaiI YATR 6 cut(s) 19, 27, 122, 274, 282, 306
FatI CATG 2 cut(s) 17, 120
Fnu4HI GCNGC 3 cut(s) 165, 177, 301
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 165, 177, 301
FspBI CTAG 1 cut(s) 14
GlaI GCGC 1 cut(s) 180
GluI GCNGC 3 cut(s) 165, 177, 301
HapII CCGG 1 cut(s) 60
HhaI GCGC 1 cut(s) 181
Hin1II CATG 2 cut(s) 21, 124
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 2 cut(s) 232, 342
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 43, 157
Hpy188I TCNGA 3 cut(s) 81, 268, 339
Hpy8I GTNNAC 2 cut(s) 43, 157
HpyCH4V TGCA 2 cut(s) 25, 43
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 382
HpyF3I CTNAG 4 cut(s) 78, 86, 236, 338
Hsp92II CATG 2 cut(s) 21, 124
HspAI GCGC 1 cut(s) 179
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 4 cut(s) 17, 73, 113, 301
Lsp1109I GCAGC 3 cut(s) 163, 176, 287
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 2 cut(s) 64, 161
MhlI GDGCHC 2 cut(s) 13, 45
MluCI AATT 3 cut(s) 106, 313, 369
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 3 cut(s) 80, 194, 354
MseI TTAA 3 cut(s) 54, 105, 350
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 173, 382
NciI CCSGG 1 cut(s) 60
NcoI CCATGG 1 cut(s) 120
NlaIII CATG 2 cut(s) 21, 124
NspI RCATGY 1 cut(s) 21
PaeI GCATGC 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 232
PflMI CCANNNNNTGG 1 cut(s) 126
PkrI GCNGC 3 cut(s) 166, 178, 302
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PshBI ATTAAT 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 13
PspEI GGTNACC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 48
SacI GAGCTC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 3 cut(s) 54, 105, 350
SatI GCNGC 3 cut(s) 165, 177, 301
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 2 cut(s) 13, 45
SmiMI CAYNNNNRTG 1 cut(s) 48
SphI GCATGC 1 cut(s) 21
Sse9I AATT 3 cut(s) 106, 313, 369
SspI AATATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 1 cut(s) 120
TasI AATT 3 cut(s) 106, 313, 369
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 3 cut(s) 54, 105, 350
Tru9I TTAA 3 cut(s) 54, 105, 350
TseI GCWGC 3 cut(s) 164, 176, 300
Van91I CCANNNNNTGG 1 cut(s) 126
VneI GTGCAC 1 cut(s) 41
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 21
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.