Rroxscaffold_2G00080900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004249
Physical Location & Seq
Reverse (-)
3841743 .. 3845631
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080900.1

Sequence Viewer

Length: 735 bp
ATGATGATCGCGAGTTTTTCCTCGAAGGTCGCTTCCTCCGGAATAGGCTTCGGAACGAAAGCCTCTCTTTCTTCACTTTTCGCGCATCGAAAAAATGGTAGTGTTAACGGGCTCACTTGCCTGGAAAAGAGGCTAGAAGAGGAAGATGCAGAAGCACAGTTAAATATGGAGCTCACTAAAGGGGCTGCTTATGCTAAAATGGCTAGAAACTTACGCAACAAGCATCTTTGGTTAGGAACTTCGGATGCCAATTTTTTGAAAATTGTAAAAATGCATATGGATGGCTTGGTTAGAATGCCAGCTCCTGTTGAAACTTCCCTTTTTGAAATATTTATATATGCCATTTCTGGGCGGTTGGTTGGGGAAAAAGGTGGAGCTTTAGACGCCAAAAATCTACGGGTGAAGGTTCTCATACTAAACCCACGACCATTTGAAAGTGCCTCTTCCACTCATTGCTATAATGTTCTATTTCTTAGAGTTTTGTGTAGAGATGACGTTAGTATAGTGTTGGCATTCCTTCTTCACAAAACTCTACTCATTAAGAAGCCCAAGGTTGCAGCCCAAGCCCATACTTGTTTAAATACATTTGTTGTAGTTGACTTGGTTGTCTTGTTGTCAAAGACCCATGTGAAGTCTGGAAGATCAGTTTTGCTGTCAGCTTCCCATCTTAGCATGATTGCAACTTGCTTCTTCTTATCTTGTTGTCGAAAGCCAAAGGCAAAGTTTGAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

26.8

Weight (kDa)

9.71

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 605
AccII CGCG 2 cut(s) 11, 83
AccIII TCCGGA 1 cut(s) 38
AciI CCGC 1 cut(s) 352
AcyI GRCGYC 1 cut(s) 384
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 5 cut(s) 259, 311, 326, 434, 728
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 4 cut(s) 172, 302, 377, 659
AluI AGCT 4 cut(s) 172, 302, 377, 659
Alw21I GWGCWC 1 cut(s) 174
AlwNI CAGNNNCTG 1 cut(s) 305
Aor13HI TCCGGA 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 185, 557
AspLEI GCGC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 412
BanII GRGCYC 2 cut(s) 114, 174
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 172, 569
BccI CCATC 2 cut(s) 275, 672
BciT130I CCWGG 1 cut(s) 122
BfaI CTAG 3 cut(s) 134, 204, 733
BisI GCNGC 2 cut(s) 186, 558
BlsI GCNGC 2 cut(s) 187, 559
Bme1390I CCNGG 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 4 cut(s) 94, 136, 232, 235
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 549
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 451
BseAI TCCGGA 1 cut(s) 38
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 2 cut(s) 250, 286
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 451
BseXI GCAGC 2 cut(s) 172, 569
Bsh1236I CGCG 2 cut(s) 11, 83
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 348
BsmI GAATGC 2 cut(s) 300, 512
Bsp1286I GDGCHC 2 cut(s) 114, 174
Bsp13I TCCGGA 1 cut(s) 38
Bsp143I GATC 2 cut(s) 6, 641
Bsp68I TCGCGA 1 cut(s) 11
BspACI CCGC 1 cut(s) 352
BspEI TCCGGA 1 cut(s) 38
BspFNI CGCG 2 cut(s) 11, 83
BsrDI GCAATG 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 2 cut(s) 6, 641
BssNI GRCGYC 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 132, 448
BstACI GRCGYC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 473, 668
BstF5I GGATG 2 cut(s) 250, 286
BstFNI CGCG 2 cut(s) 11, 83
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 2 cut(s) 9, 644
BstMBI GATC 2 cut(s) 6, 641
BstMWI GCNNNNNNNGC 4 cut(s) 191, 200, 383, 563
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstUI CGCG 2 cut(s) 11, 83
BstV1I GCAGC 2 cut(s) 172, 569
BtsCI GGATG 2 cut(s) 250, 286
BtuMI TCGCGA 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 85
CseI GACGC 1 cut(s) 392
CviAII CATG 2 cut(s) 626, 673
DdeI CTNAG 2 cut(s) 473, 668
DpnI GATC 2 cut(s) 8, 643
DpnII GATC 2 cut(s) 6, 641
DraI TTTAAA 1 cut(s) 579
DrdI GACNNNNNNGTC 1 cut(s) 605
DseDI GACNNNNNNGTC 1 cut(s) 605
Eam1104I CTCTTC 2 cut(s) 132, 448
EarI CTCTTC 2 cut(s) 132, 448
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 549
Eco24I GRGCYC 2 cut(s) 114, 174
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 549
EcoT22I ATGCAT 1 cut(s) 276
EcoT38I GRGCYC 2 cut(s) 114, 174
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 2 cut(s) 629, 676
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 427, 459
FatI CATG 2 cut(s) 625, 672
FauNDI CATATG 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 186, 558
FokI GGATG 2 cut(s) 257, 293
FriOI GRGCYC 2 cut(s) 114, 174
Fsp4HI GCNGC 2 cut(s) 186, 558
FspBI CTAG 3 cut(s) 134, 204, 733
GlaI GCGC 1 cut(s) 84
GluI GCNGC 2 cut(s) 186, 558
HapII CCGG 1 cut(s) 39
HgaI GACGC 1 cut(s) 392
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 2 cut(s) 629, 676
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 2 cut(s) 106, 598
HindII GTYRAC 2 cut(s) 106, 598
HpaI GTTAAC 1 cut(s) 106
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 2 cut(s) 106, 598
Hpy188I TCNGA 2 cut(s) 53, 244
Hpy188III TCNNGA 3 cut(s) 10, 39, 636
Hpy8I GTNNAC 2 cut(s) 106, 598
HpyAV CCTTC 3 cut(s) 19, 397, 527
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 4 cut(s) 149, 274, 557, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 200, 383, 563
HpyF3I CTNAG 2 cut(s) 473, 668
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 2 cut(s) 629, 676
HspAI GCGC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 38
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 6, 641
LmnI GCTCC 3 cut(s) 169, 307, 374
LpnPI CCDG 7 cut(s) 52, 107, 134, 312, 318, 333, 621
Lsp1109I GCAGC 2 cut(s) 172, 569
LweI GCATC 4 cut(s) 94, 136, 232, 235
MaeI CTAG 3 cut(s) 134, 204, 733
MaeII ACGT 1 cut(s) 495
MalI GATC 2 cut(s) 8, 643
MboI GATC 2 cut(s) 6, 641
MboII GAAGA 7 cut(s) 63, 149, 155, 435, 512, 651, 682
MhlI GDGCHC 2 cut(s) 114, 174
MluCI AATT 2 cut(s) 250, 261
MnlI CCTC 6 cut(s) 31, 46, 73, 123, 133, 451
Mph1103I ATGCAT 1 cut(s) 276
MroI TCCGGA 1 cut(s) 38
MseI TTAA 4 cut(s) 105, 161, 540, 578
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 2 cut(s) 300, 512
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 11, 83
MwoI GCNNNNNNNGC 4 cut(s) 191, 200, 383, 563
NdeI CATATG 1 cut(s) 276
NdeII GATC 2 cut(s) 6, 641
NlaIII CATG 2 cut(s) 629, 676
NruI TCGCGA 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 276
PctI GAATGC 2 cut(s) 300, 512
PkrI GCNGC 2 cut(s) 187, 559
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PstNI CAGNNNCTG 1 cut(s) 305
RruI TCGCGA 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 4 cut(s) 105, 161, 540, 578
SatI GCNGC 2 cut(s) 186, 558
Sau3AI GATC 2 cut(s) 6, 641
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 2 cut(s) 114, 174
SetI ASST 9 cut(s) 30, 174, 304, 373, 379, 408, 498, 555, 661
SfaNI GCATC 4 cut(s) 94, 136, 232, 235
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 2 cut(s) 250, 261
SsiI CCGC 1 cut(s) 352
SspI AATATT 1 cut(s) 330
SspMI CTAG 3 cut(s) 134, 204, 733
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 498
TaqI TCGA 3 cut(s) 23, 88, 706
TasI AATT 2 cut(s) 250, 261
Tru1I TTAA 4 cut(s) 105, 161, 540, 578
Tru9I TTAA 4 cut(s) 105, 161, 540, 578
TseI GCWGC 2 cut(s) 185, 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XspI CTAG 3 cut(s) 134, 204, 733
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.