Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004249

Physical Location & Seq

Genomic Coordinates Forward (+)

61903846 .. 61909970

Gene Structure 6125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCCTGCAATAATGGAATTGTTGCGCCATTTGCAGAGAAGAGTGCAGGCTTGCCATCGTTGTTGAGGTCAAAGAACAAGTCTCCGGAGAAGAAAACAGGGGAAGAAGGGAAACAAGAAGAGATTCAGAGGAAGAAAGAAAAGGGGAGAGAGGATGAACAAAAGAAAGAAAAGAAGTGGCTCTCCCTCTCTGTGGTTGAGCAACTAACTGAGACTGCACTTGCTATCACCAACCAAGGACCAACAAGGTCACATTCCTACTACATTTTAGCACGATCTTACCATAGCAAGAGGAGGAAACACAGCAACCGGAGCAACGATTCCGATTCCGATCCAGCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0000785 GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_2 TPR_6 TPR_8

Protein Analysis

114

Amino Acids

12.9

Weight (kDa)

9.61

Isoelectric Point (pI)

76.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004249)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g09760
rosa_chinensis	RchiOBHm_Chr3g0458091 RchiOBHm_Chr5g0003161 RchiOBHm_Chr5g0007121 RchiOBHm_Chr6g0279321
rosa_laevigata	RLG00000026451 RLG00000029438
rosa_multiflora	Rmu_co8238179.1_g000001 Rmu_co8396177.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080900 Rroxscaffold_2G00154310 Rroxscaffold_3G00247340 Rroxscaffold_5G00333180 Rroxscaffold_6G00387980 Rroxscaffold_7G00211470
rosa_rugosa	Rorug04G0107200 Rorug04G0148900 Rorug07G0129500 Rorug07G0183300
rosa_samantha	Rh2BG072400 Rh2CG073600 Rh3CG088900 Rh4AG169800 Rh4AG170300 Rh6CG160600 Rh6DG341700 Rh7AG262100 Rh7AG375400 Rh7CG393900 Rh7DG268600
rosa_wichuraiana	Rw2G027560 Rw2G052200 Rw7G022350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	85
AclWI	GGATC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	87, 206
AlwI	GGATC	1 cut(s)	326
Aor13HI	TCCGGA	1 cut(s)	85
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	239
BccI	CCATC	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	87, 206
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	2 cut(s)	85, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse8I	GATNNNNATC	1 cut(s)	330
BseAI	TCCGGA	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	307
BsgI	GTGCAG	2 cut(s)	66, 201
BsiSI	CCGG	2 cut(s)	86, 310
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	2 cut(s)	87, 206
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	275, 331
BspCNI	CTCAG	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	85
BspPI	GGATC	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	2 cut(s)	275, 331
BssT1I	CCWWGG	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	35, 114
BstC8I	GCNNGC	2 cut(s)	49, 53
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	278, 334
BstMAI	GTCTC	2 cut(s)	87, 206
BstMBI	GATC	2 cut(s)	275, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 312
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	49, 53
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	239
CviJI	RGCY	2 cut(s)	51, 181
CviKI_1	RGCY	2 cut(s)	51, 181
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	277, 333
DpnII	GATC	2 cut(s)	275, 331
Eam1104I	CTCTTC	2 cut(s)	35, 114
EarI	CTCTTC	2 cut(s)	35, 114
Eco130I	CCWWGG	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaiI	YATR	2 cut(s)	285, 343
FokI	GGATG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	27
HapII	CCGG	2 cut(s)	86, 310
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	3 cut(s)	124, 320, 326
HpaII	CCGG	2 cut(s)	86, 310
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	129, 325, 331
Hpy188III	TCNNGA	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	101
HpyCH4V	TGCA	4 cut(s)	9, 35, 47, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 312
HpyF3I	CTNAG	1 cut(s)	210
HspAI	GCGC	1 cut(s)	26
Kpn2I	TCCGGA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	275, 331
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	5 cut(s)	19, 33, 84, 99, 323
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	2 cut(s)	277, 333
MboI	GATC	2 cut(s)	275, 331
MboII	GAAGA	5 cut(s)	52, 103, 116, 131, 145
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	6 cut(s)	60, 123, 145, 197, 285, 288
MroI	TCCGGA	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	123
MspI	CCGG	2 cut(s)	86, 310
MwoI	GCNNNNNNNGC	2 cut(s)	32, 312
NdeII	GATC	2 cut(s)	275, 331
NmuCI	GTSAC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	124, 320, 326
PspPI	GGNCC	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	275, 331
Sau96I	GGNCC	1 cut(s)	239
SetI	ASST	2 cut(s)	71, 251
SinI	GGWCC	1 cut(s)	239
Sse9I	AATT	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	235
TasI	AATT	1 cut(s)	18
TfiI	GAWTC	3 cut(s)	124, 320, 326
TseFI	GTSAC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.