Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004249

Physical Location & Seq

Genomic Coordinates Forward (+)

38762255 .. 38763523

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029438

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTTTAGAGCTCTAGCATGCTTGCATAAACAGGGTGTGGTGCACAGAGATGTTAAGCCCGGAAACTTTCTCTTCTCTCAGAAGCTAAGCAAAGGTTACCTGATTGATTTCAACCTTGCCATGAGTGTAGATGTTCATGTTATGGCAAAAACTTCGATCGCAAAATTTGAGGAAATGTGGATGCAGCTTCTGCCTAAAGCAAAAAGGCTAGAAGAGGAAGATGCAGAAGCACAGTTAAATATGGAGCTCACTAAAGGGGCTGCTCATGCTAAAATGGCTAGAAACTTACGCAGCAAGCTTTATGAGGTTGATATGCATTTGGAAGAACTCCAAGATTTGGTTGTTCAAAAATGCAGGTTGTTTAGTAACATTTTATCTAATTACAAAGTGCTTTCCATCTATTTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

137

Amino Acids

15.71

Weight (kDa)

8.87

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 47	1.5e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004249)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g09760
rosa_chinensis	RchiOBHm_Chr3g0458091 RchiOBHm_Chr5g0003161 RchiOBHm_Chr5g0007121 RchiOBHm_Chr6g0279321
rosa_laevigata	RLG00000026451 RLG00000029438
rosa_multiflora	Rmu_co8238179.1_g000001 Rmu_co8396177.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080900 Rroxscaffold_2G00154310 Rroxscaffold_3G00247340 Rroxscaffold_5G00333180 Rroxscaffold_6G00387980 Rroxscaffold_7G00211470
rosa_rugosa	Rorug04G0107200 Rorug04G0148900 Rorug07G0129500 Rorug07G0183300
rosa_samantha	Rh2BG072400 Rh2CG073600 Rh3CG088900 Rh4AG169800 Rh4AG170300 Rh6CG160600 Rh6DG341700 Rh7AG262100 Rh7AG375400 Rh7CG393900 Rh7DG268600
rosa_wichuraiana	Rw2G027560 Rw2G052200 Rw7G022350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	112, 347
AluBI	AGCT	5 cut(s)	11, 85, 187, 247, 298
AluI	AGCT	5 cut(s)	11, 85, 187, 247, 298
Alw21I	GWGCWC	3 cut(s)	13, 45, 249
Alw44I	GTGCAC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	190
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	184, 260, 291
ApoI	RAATTY	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	45
BanII	GRGCYC	2 cut(s)	13, 249
Bbv12I	GWGCWC	3 cut(s)	13, 45, 249
BbvI	GCAGC	3 cut(s)	196, 247, 303
BccI	CCATC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	3 cut(s)	14, 209, 279
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	3 cut(s)	185, 261, 292
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	3 cut(s)	186, 262, 293
Bme1390I	CCNGG	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	171, 211
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	196, 247, 303
Bsh1285I	CGRYCG	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	3 cut(s)	13, 45, 249
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	337
Bsp1286I	GDGCHC	3 cut(s)	13, 45, 249
Bsp143I	GATC	2 cut(s)	156, 405
Bsp1720I	GCTNAGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	345
BssMI	GATC	2 cut(s)	156, 405
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	2 cut(s)	77, 207
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	19, 23, 296
BstDEI	CTNAG	2 cut(s)	78, 86
BstEII	GGTNACC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	2 cut(s)	159, 408
BstMBI	GATC	2 cut(s)	156, 405
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 266, 275
BstNSI	RCATGY	1 cut(s)	21
BstPI	GGTNACC	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	196, 247, 303
BtsCI	GGATG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	3 cut(s)	19, 23, 296
CaiI	CAGNNNCTG	1 cut(s)	190
CviAII	CATG	4 cut(s)	18, 121, 137, 266
CviJI	RGCY	9 cut(s)	11, 58, 85, 187, 208, 247, 260, 278, 298
CviKI_1	RGCY	9 cut(s)	11, 58, 85, 187, 208, 247, 260, 278, 298
DdeI	CTNAG	2 cut(s)	78, 86
DpnI	GATC	2 cut(s)	158, 407
DpnII	GATC	2 cut(s)	156, 405
Eam1104I	CTCTTC	2 cut(s)	77, 207
EarI	CTCTTC	2 cut(s)	77, 207
Ecl136II	GAGCTC	2 cut(s)	11, 247
Eco24I	GRGCYC	2 cut(s)	13, 249
Eco53kI	GAGCTC	2 cut(s)	11, 247
Eco91I	GGTNACC	1 cut(s)	95
EcoICRI	GAGCTC	2 cut(s)	11, 247
EcoO65I	GGTNACC	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	318
EcoT38I	GRGCYC	2 cut(s)	13, 249
FaeI	CATG	4 cut(s)	21, 124, 140, 269
FaiI	YATR	9 cut(s)	19, 27, 122, 138, 143, 242, 267, 303, 314
FatI	CATG	4 cut(s)	17, 120, 136, 265
Fnu4HI	GCNGC	3 cut(s)	185, 261, 292
FokI	GGATG	1 cut(s)	193
FriOI	GRGCYC	2 cut(s)	13, 249
Fsp4HI	GCNGC	3 cut(s)	185, 261, 292
FspBI	CTAG	3 cut(s)	14, 209, 279
GluI	GCNGC	3 cut(s)	185, 261, 292
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	4 cut(s)	21, 124, 140, 269
HindIII	AAGCTT	1 cut(s)	296
HpaII	CCGG	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4V	TGCA	6 cut(s)	25, 43, 184, 224, 316, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 266, 275
HpyF3I	CTNAG	2 cut(s)	78, 86
Hsp92II	CATG	4 cut(s)	21, 124, 140, 269
Kzo9I	GATC	2 cut(s)	156, 405
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	4 cut(s)	17, 73, 113, 340
Lsp1109I	GCAGC	3 cut(s)	196, 247, 303
LweI	GCATC	2 cut(s)	171, 211
MaeI	CTAG	3 cut(s)	14, 209, 279
MaeIII	GTNAC	2 cut(s)	95, 365
MalI	GATC	2 cut(s)	158, 407
MboI	GATC	2 cut(s)	156, 405
MboII	GAAGA	4 cut(s)	64, 224, 230, 335
MhlI	GDGCHC	3 cut(s)	13, 45, 249
MluCI	AATT	2 cut(s)	164, 379
MnlI	CCTC	3 cut(s)	163, 208, 298
Mph1103I	ATGCAT	1 cut(s)	318
MseI	TTAA	2 cut(s)	54, 236
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	190, 266, 275
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	156, 405
NlaIII	CATG	4 cut(s)	21, 124, 140, 269
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	1 cut(s)	21
PaeI	GCATGC	1 cut(s)	21
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	3 cut(s)	186, 262, 293
Ple19I	CGATCG	1 cut(s)	159
Psp124BI	GAGCTC	2 cut(s)	13, 249
PspEI	GGTNACC	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	190
PvuI	CGATCG	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	2 cut(s)	13, 249
SaqAI	TTAA	2 cut(s)	54, 236
SatI	GCNGC	3 cut(s)	185, 261, 292
Sau3AI	GATC	2 cut(s)	156, 405
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	3 cut(s)	13, 45, 249
SfaNI	GCATC	2 cut(s)	171, 211
SmiMI	CAYNNNNRTG	1 cut(s)	48
SphI	GCATGC	1 cut(s)	21
Sse9I	AATT	2 cut(s)	164, 379
SspMI	CTAG	3 cut(s)	14, 209, 279
SstI	GAGCTC	2 cut(s)	13, 249
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	164, 379
Tru1I	TTAA	2 cut(s)	54, 236
Tru9I	TTAA	2 cut(s)	54, 236
TseI	GCWGC	3 cut(s)	184, 260, 291
TspDTI	ATGAA	1 cut(s)	125
Van91I	CCANNNNNTGG	1 cut(s)	337
VneI	GTGCAC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	21
XspI	CTAG	3 cut(s)	14, 209, 279
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.