RNA polymerase-associated protein CTR9 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom08g09760 |
| rosa_chinensis | RchiOBHm_Chr3g0458091 RchiOBHm_Chr5g0003161 RchiOBHm_Chr5g0007121 RchiOBHm_Chr6g0279321 |
| rosa_laevigata | RLG00000026451 RLG00000029438 |
| rosa_multiflora | Rmu_co8238179.1_g000001 Rmu_co8396177.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00080900 Rroxscaffold_2G00154310 Rroxscaffold_3G00247340 Rroxscaffold_5G00333180 Rroxscaffold_6G00387980 Rroxscaffold_7G00211470 |
| rosa_rugosa | Rorug04G0107200 Rorug04G0148900 Rorug07G0129500 Rorug07G0183300 |
| rosa_samantha | Rh2BG072400 Rh2CG073600 Rh3CG088900 Rh4AG169800 Rh4AG170300 Rh6CG160600 Rh6DG341700 Rh7AG262100 Rh7AG375400 Rh7CG393900 Rh7DG268600 |
| rosa_wichuraiana | Rw2G027560 Rw2G052200 Rw7G022350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AflII | CTTAAG | 1 cut(s) | 206 |
| AflIII | ACRYGT | 1 cut(s) | 313 |
| AgsI | TTSAA | 2 cut(s) | 250, 320 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 260, 292 |
| Alw26I | GTCTC | 1 cut(s) | 98 |
| AspS9I | GGNCC | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 2 cut(s) | 112, 223 |
| AvaII | GGWCC | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 98 |
| BfmI | CTRYAG | 1 cut(s) | 154 |
| BfrI | CTTAAG | 1 cut(s) | 206 |
| Bme18I | GGWCC | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 1 cut(s) | 131 |
| BsaJI | CCNNGG | 1 cut(s) | 127 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 182, 186, 212, 216 |
| Bse1I | ACTGG | 1 cut(s) | 76 |
| BseDI | CCNNGG | 1 cut(s) | 127 |
| BseGI | GGATG | 1 cut(s) | 231 |
| BseMII | CTCAG | 1 cut(s) | 93 |
| BseNI | ACTGG | 1 cut(s) | 76 |
| BseRI | GAGGAG | 1 cut(s) | 235 |
| BsgI | GTGCAG | 1 cut(s) | 93 |
| BsmAI | GTCTC | 1 cut(s) | 98 |
| Bsp143I | GATC | 1 cut(s) | 167 |
| Bsp19I | CCATGG | 1 cut(s) | 127 |
| BspCNI | CTCAG | 1 cut(s) | 94 |
| BspTI | CTTAAG | 1 cut(s) | 206 |
| BsrI | ACTGG | 1 cut(s) | 76 |
| BssECI | CCNNGG | 1 cut(s) | 127 |
| BssMI | GATC | 1 cut(s) | 167 |
| BssT1I | CCWWGG | 1 cut(s) | 127 |
| BstAFI | CTTAAG | 1 cut(s) | 206 |
| BstC8I | GCNNGC | 1 cut(s) | 182 |
| BstDEI | CTNAG | 1 cut(s) | 102 |
| BstDSI | CCRYGG | 1 cut(s) | 127 |
| BstF5I | GGATG | 1 cut(s) | 231 |
| BstKTI | GATC | 1 cut(s) | 170 |
| BstMAI | GTCTC | 1 cut(s) | 98 |
| BstMBI | GATC | 1 cut(s) | 167 |
| BstNSI | RCATGY | 1 cut(s) | 317 |
| BstSFI | CTRYAG | 1 cut(s) | 154 |
| BtgI | CCRYGG | 1 cut(s) | 127 |
| BtsCI | GGATG | 1 cut(s) | 231 |
| BtsI | GCAGTG | 1 cut(s) | 330 |
| BtsIMutI | CAGTG | 2 cut(s) | 69, 330 |
| Cac8I | GCNNGC | 1 cut(s) | 182 |
| Cfr13I | GGNCC | 1 cut(s) | 131 |
| CviAII | CATG | 2 cut(s) | 128, 314 |
| CviJI | RGCY | 2 cut(s) | 39, 292 |
| CviKI_1 | RGCY | 2 cut(s) | 39, 292 |
| DdeI | CTNAG | 1 cut(s) | 102 |
| DpnI | GATC | 1 cut(s) | 169 |
| DpnII | GATC | 1 cut(s) | 167 |
| Eco130I | CCWWGG | 1 cut(s) | 127 |
| Eco47I | GGWCC | 1 cut(s) | 131 |
| EcoT14I | CCWWGG | 1 cut(s) | 127 |
| ErhI | CCWWGG | 1 cut(s) | 127 |
| FaeI | CATG | 2 cut(s) | 131, 317 |
| FaiI | YATR | 4 cut(s) | 129, 156, 177, 315 |
| FatI | CATG | 2 cut(s) | 127, 313 |
| FokI | GGATG | 1 cut(s) | 238 |
| Hin1II | CATG | 2 cut(s) | 131, 317 |
| HincII | GTYRAC | 1 cut(s) | 77 |
| HindII | GTYRAC | 1 cut(s) | 77 |
| HinfI | GANTC | 3 cut(s) | 229, 250, 262 |
| HphI | GGTGA | 2 cut(s) | 112, 223 |
| Hpy166II | GTNNAC | 2 cut(s) | 77, 286 |
| Hpy188I | TCNGA | 2 cut(s) | 255, 310 |
| Hpy8I | GTNNAC | 2 cut(s) | 77, 286 |
| HpyAV | CCTTC | 1 cut(s) | 286 |
| HpyCH4V | TGCA | 1 cut(s) | 110 |
| HpyF3I | CTNAG | 1 cut(s) | 102 |
| Hsp92II | CATG | 2 cut(s) | 131, 317 |
| Kzo9I | GATC | 1 cut(s) | 167 |
| LpnPI | CCDG | 3 cut(s) | 35, 57, 173 |
| MaeIII | GTNAC | 1 cut(s) | 141 |
| MalI | GATC | 1 cut(s) | 169 |
| MboI | GATC | 1 cut(s) | 167 |
| MboII | GAAGA | 2 cut(s) | 25, 58 |
| MluCI | AATT | 1 cut(s) | 87 |
| MnlI | CCTC | 6 cut(s) | 3, 55, 184, 213, 216, 274 |
| MseI | TTAA | 1 cut(s) | 207 |
| MspCI | CTTAAG | 1 cut(s) | 206 |
| NcoI | CCATGG | 1 cut(s) | 127 |
| NdeII | GATC | 1 cut(s) | 167 |
| NlaIII | CATG | 2 cut(s) | 131, 317 |
| NmuCI | GTSAC | 1 cut(s) | 141 |
| NspI | RCATGY | 1 cut(s) | 317 |
| PciI | ACATGT | 1 cut(s) | 313 |
| PfeI | GAWTC | 3 cut(s) | 229, 250, 262 |
| PscI | ACATGT | 1 cut(s) | 313 |
| PspPI | GGNCC | 1 cut(s) | 131 |
| SaqAI | TTAA | 1 cut(s) | 207 |
| Sau3AI | GATC | 1 cut(s) | 167 |
| Sau96I | GGNCC | 1 cut(s) | 131 |
| SetI | ASST | 3 cut(s) | 143, 213, 285 |
| SfcI | CTRYAG | 1 cut(s) | 154 |
| SinI | GGWCC | 1 cut(s) | 131 |
| SmlI | CTYRAG | 1 cut(s) | 206 |
| SmoI | CTYRAG | 1 cut(s) | 206 |
| Sse9I | AATT | 1 cut(s) | 87 |
| StyI | CCWWGG | 1 cut(s) | 127 |
| TaqI | TCGA | 1 cut(s) | 279 |
| TasI | AATT | 1 cut(s) | 87 |
| TfiI | GAWTC | 3 cut(s) | 229, 250, 262 |
| Tru1I | TTAA | 1 cut(s) | 207 |
| Tru9I | TTAA | 1 cut(s) | 207 |
| TscAI | CASTG | 2 cut(s) | 76, 330 |
| TseFI | GTSAC | 1 cut(s) | 141 |
| Tsp45I | GTSAC | 1 cut(s) | 141 |
| TspDTI | ATGAA | 1 cut(s) | 242 |
| TspRI | CASTG | 2 cut(s) | 76, 330 |
| Vha464I | CTTAAG | 1 cut(s) | 206 |
| VpaK11BI | GGWCC | 1 cut(s) | 131 |
| XceI | RCATGY | 1 cut(s) | 317 |