Rmu_co8238179.1_g000001

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8238179.1
OG0004249
Physical Location & Seq
Reverse (-)
1 .. 556
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8238179.1_g000001.1.cds

Sequence Viewer

Length: 540 bp
atggcggcctacgactacgacgagccctcggcgactcaccgcccagcctcctccgacgcgccgtcgcaggagcccgggtacgacccgaaccacgtccctgactccgtgaaatccttcgtcgtccatctgtaccgccacatccgcgagaagaacgtgtatgagatccaccagatgtacgagacttcgttccagggcatatcggagcgcctcttcaaggacacgccgtggccgtccgtggacgccgtcgcgcaccacgtcgacaacgaccacgtgttctgcctgctataccgtgagatgtggttccgccacctctacgcgaggctccagccgacgctgaagcagagaatcgactcgtgggacaattactgtagcctttttcaggtggttctgcacggcgtggtcaatatgcagctgccgaatcagtggctgtgggacatggtggatgagtttgtgtaccagtttcagagcttctgtcagtatcgggctaagatgaagaacaagactgagcaggagattgctcttctcaggcagtttgatcaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Paf67

Protein Analysis

180

Amino Acids

21.56

Weight (kDa)

5.75

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 258
AccII CGCG 4 cut(s) 59, 144, 248, 317
AciI CCGC 5 cut(s) 5, 40, 133, 142, 304
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 356
AcvI CACGTG 1 cut(s) 271
AcyI GRCGYC 1 cut(s) 240
AdeI CACNNNGTG 2 cut(s) 225, 397
AfaI GTAC 4 cut(s) 80, 131, 176, 455
AfiI CCNNNNNNNGG 2 cut(s) 214, 379
AflIII ACRYGT 2 cut(s) 153, 270
AgsI TTSAA 1 cut(s) 214
AhdI GACNNNNNGTC 1 cut(s) 61
AjiI CACGTC 2 cut(s) 94, 256
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 2 cut(s) 412, 468
AluI AGCT 2 cut(s) 412, 468
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 427
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 2 cut(s) 6, 227
ApeKI GCWGC 2 cut(s) 409, 412
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 3 cut(s) 61, 207, 250
AsuC2I CCSGG 2 cut(s) 75, 76
AsuHPI GGTGA 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 74
BanII GRGCYC 2 cut(s) 27, 75
BauI CACGAG 1 cut(s) 352
BbrPI CACGTG 1 cut(s) 271
BbvI GCAGC 2 cut(s) 399, 421
BccI CCATC 1 cut(s) 132
BceAI ACGGC 5 cut(s) 46, 208, 214, 227, 409
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 2 cut(s) 75, 76
BcoDI GTCTC 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 367
BfoI RGCGCY 1 cut(s) 208
BisI GCNGC 3 cut(s) 6, 410, 413
BlsI GCNGC 3 cut(s) 7, 411, 414
Bme1390I CCNGG 3 cut(s) 75, 76, 191
BmeRI GACNNNNNGTC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 74
BmgBI CACGTC 2 cut(s) 94, 256
BmiI GGNNCC 3 cut(s) 72, 302, 323
BmrFI CCNGG 3 cut(s) 75, 76, 191
BpmI CTGGAG 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 75, 76
BsaAI YACGTR 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 5 cut(s) 27, 74, 190, 224, 234
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 379
Bse1I ACTGG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 5 cut(s) 27, 74, 190, 224, 234
BseGI GGATG 2 cut(s) 138, 448
BseLI CCNNNNNNNGG 2 cut(s) 214, 379
BseMII CTCAG 2 cut(s) 495, 538
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 2 cut(s) 399, 421
BseYI CCCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 374
Bsh1236I CGCG 4 cut(s) 59, 144, 248, 317
BshFI GGCC 2 cut(s) 8, 229
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 3 cut(s) 80, 371, 446
BslI CCNNNNNNNGG 2 cut(s) 214, 379
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 3 cut(s) 80, 371, 446
BsnI GGCC 2 cut(s) 8, 229
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 27, 75
Bsp143I GATC 2 cut(s) 162, 535
BspACI CCGC 5 cut(s) 5, 40, 133, 142, 304
BspANI GGCC 2 cut(s) 8, 229
BspCNI CTCAG 2 cut(s) 496, 537
BspFNI CGCG 4 cut(s) 59, 144, 248, 317
BspLI GGNNCC 3 cut(s) 72, 302, 323
BspPI GGATC 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 525
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 5 cut(s) 27, 74, 190, 224, 234
BssMI GATC 2 cut(s) 162, 535
BssNI GRCGYC 1 cut(s) 240
BssSI CACGAG 1 cut(s) 352
Bst2BI CACGAG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 290, 368
Bst6I CTCTTC 2 cut(s) 215, 525
BstACI GRCGYC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 3 cut(s) 486, 504, 524
BstDSI CCRYGG 2 cut(s) 224, 234
BstENI CCTNNNNNAGG 2 cut(s) 212, 377
BstF5I GGATG 2 cut(s) 138, 448
BstFNI CGCG 4 cut(s) 59, 144, 248, 317
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 3 cut(s) 61, 207, 250
BstKTI GATC 2 cut(s) 165, 538
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 162, 535
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 3 cut(s) 73, 74, 189
BstSFI CTRYAG 1 cut(s) 367
BstUI CGCG 4 cut(s) 59, 144, 248, 317
BstV1I GCAGC 2 cut(s) 399, 421
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 2 cut(s) 8, 229
BtgI CCRYGG 2 cut(s) 224, 234
BtrI CACGTC 2 cut(s) 94, 256
BtsCI GGATG 2 cut(s) 138, 448
BtsIMutI CAGTG 1 cut(s) 428
Cac8I GCNNGC 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 427
CfoI GCGC 3 cut(s) 61, 207, 250
Cfr9I CCCGGG 1 cut(s) 74
CseI GACGC 3 cut(s) 65, 248, 340
Csp6I GTAC 4 cut(s) 79, 130, 175, 454
CviAII CATG 1 cut(s) 436
CviQI GTAC 4 cut(s) 79, 130, 175, 454
DdeI CTNAG 3 cut(s) 486, 504, 524
DpnI GATC 2 cut(s) 164, 537
DpnII GATC 2 cut(s) 162, 535
DraIII CACNNNGTG 2 cut(s) 225, 397
DriI GACNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 215, 525
Eam1105I GACNNNNNGTC 1 cut(s) 61
EarI CTCTTC 2 cut(s) 215, 525
EciI GGCGGA 1 cut(s) 293
Eco24I GRGCYC 2 cut(s) 27, 75
Eco57I CTGAAG 1 cut(s) 356
Eco72I CACGTG 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 74
EcoNI CCTNNNNNAGG 2 cut(s) 212, 377
EcoRII CCWGG 1 cut(s) 189
EcoT38I GRGCYC 2 cut(s) 27, 75
FaeI CATG 1 cut(s) 439
FaiI YATR 5 cut(s) 159, 197, 286, 407, 437
FaqI GGGAC 3 cut(s) 80, 371, 446
FatI CATG 1 cut(s) 435
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 3 cut(s) 6, 410, 413
FokI GGATG 2 cut(s) 125, 455
FriOI GRGCYC 2 cut(s) 27, 75
Fsp4HI GCNGC 3 cut(s) 6, 410, 413
GlaI GCGC 3 cut(s) 60, 206, 249
GluI GCNGC 3 cut(s) 6, 410, 413
GsaI CCCAGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 2 cut(s) 8, 229
HapII CCGG 1 cut(s) 75
HgaI GACGC 3 cut(s) 65, 248, 340
HhaI GCGC 3 cut(s) 61, 207, 250
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 1 cut(s) 439
Hin6I GCGC 3 cut(s) 59, 205, 248
HinP1I GCGC 3 cut(s) 59, 205, 248
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 5 cut(s) 34, 101, 345, 350, 418
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 3 cut(s) 238, 259, 454
Hpy188I TCNGA 3 cut(s) 55, 202, 465
Hpy8I GTNNAC 3 cut(s) 238, 259, 454
Hpy99I CGWCG 7 cut(s) 23, 59, 67, 122, 248, 260, 334
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 290, 368
HpyCH4IV ACGT 4 cut(s) 93, 153, 255, 270
HpyCH4V TGCA 2 cut(s) 391, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 3 cut(s) 486, 504, 524
HpySE526I ACGT 4 cut(s) 93, 153, 255, 270
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 1 cut(s) 439
HspAI GCGC 3 cut(s) 59, 205, 248
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 2 cut(s) 162, 535
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 3 cut(s) 70, 202, 327
Lsp1109I GCAGC 2 cut(s) 399, 421
MaeII ACGT 4 cut(s) 93, 153, 255, 270
MalI GATC 2 cut(s) 164, 537
MboI GATC 2 cut(s) 162, 535
MboII GAAGA 4 cut(s) 160, 202, 505, 512
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 2 cut(s) 27, 75
MluCI AATT 1 cut(s) 361
MlyI GAGTC 3 cut(s) 28, 95, 344
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 6 cut(s) 37, 58, 61, 218, 312, 320
MroXI GAANNNNTTC 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 3 cut(s) 75, 76, 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 4 cut(s) 59, 144, 248, 317
MwoI GCNNNNNNNGC 1 cut(s) 141
NciI CCSGG 2 cut(s) 75, 76
NdeII GATC 2 cut(s) 162, 535
NlaIII CATG 1 cut(s) 439
NlaIV GGNNCC 3 cut(s) 72, 302, 323
NmeAIII GCCGAG 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 525
PcsI WCGNNNNNNNCGW 4 cut(s) 18, 227, 252, 261
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 2 cut(s) 345, 418
PflFI GACNNNGTC 1 cut(s) 242
PkrI GCNGC 3 cut(s) 7, 411, 414
PleI GAGTC 3 cut(s) 28, 95, 344
PmaCI CACGTG 1 cut(s) 271
PmlI CACGTG 1 cut(s) 271
PpsI GAGTC 3 cut(s) 28, 95, 344
Ppu21I YACGTR 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 189
PspCI CACGTG 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 3 cut(s) 72, 302, 323
PstNI CAGNNNCTG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 162
PsyI GACNNNGTC 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 412
RsaI GTAC 4 cut(s) 80, 131, 176, 455
RsaNI GTAC 4 cut(s) 79, 130, 175, 454
SalI GTCGAC 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 525
SatI GCNGC 3 cut(s) 6, 410, 413
Sau3AI GATC 2 cut(s) 162, 535
SchI GAGTC 3 cut(s) 28, 95, 344
ScrFI CCNGG 3 cut(s) 75, 76, 191
SduI GDGCHC 2 cut(s) 27, 75
SetI ASST 8 cut(s) 96, 156, 258, 273, 312, 384, 414, 470
SfcI CTRYAG 1 cut(s) 367
SmaI CCCGGG 1 cut(s) 76
Sse9I AATT 1 cut(s) 361
SsiI CCGC 5 cut(s) 5, 40, 133, 142, 304
StyD4I CCNGG 3 cut(s) 73, 74, 189
TaaI ACNGT 2 cut(s) 290, 368
TaiI ACGT 4 cut(s) 96, 156, 258, 273
TaqI TCGA 2 cut(s) 258, 348
TasI AATT 1 cut(s) 361
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 345, 418
TscAI CASTG 1 cut(s) 428
TseI GCWGC 2 cut(s) 409, 412
TspDTI ATGAA 1 cut(s) 506
TspGWI ACGGA 2 cut(s) 94, 223
TspMI CCCGGG 1 cut(s) 74
TspRI CASTG 1 cut(s) 428
Tth111I GACNNNGTC 1 cut(s) 242
XagI CCTNNNNNAGG 2 cut(s) 212, 377
XmaI CCCGGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.