Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Reverse (-)

4537845 .. 4538743

Gene Structure 899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28829

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCCTCAGGTTGGAAGAGCATAGGGAGATACCTCATATTTACTTTCTTCTGTAAATATTTTTTTTCCAAAAAGGAGCCAGTGCTGTTGTCTGGCAATGATGTCTTGTGGACATTTGTGAACTTTGCTGGAGAGGAACATACAAATTTTCAAACTCTTGTGGCTCTCTTGAATATGCTGAGTACCTTGGCTTCTAGTCAAGAAGGTGCTGCAACGGTTTTAGAGTTACTTCAGGGCAAAGTGCCCTTGCTGGTGTCATGTTACTGGAACTCCCAGAGGACGTATATCACGATGGTGGAAATGTGCCACGTTGTCGGGAATAGAGATCAGTTAATAACCATGTTACTTCCACTAGTGGAACATGTGCTGAATGTCTTCCTAAGCCATTTTCAGTATAGGTACGTAGGGATGGATCTTATCTTCTTCCCCCCTTCCCCTGCCTTATTTTTTCAAGAGAAGGGTTGCTGGTGGCAGTATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

160

Amino Acids

18.53

Weight (kDa)

6.4

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	184, 401
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	152, 172, 452
AhlI	ACTAGT	1 cut(s)	352
AleI	CACNNNNGTG	1 cut(s)	293
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	145
Asp700I	GAANNNNTTC	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	246
BarI	GAAGNNNNNNTAC	2 cut(s)	175, 207
BbsI	GAAGAC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	286, 403
BcuI	ACTAGT	1 cut(s)	352
BfaI	CTAG	2 cut(s)	195, 353
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	80, 269
Bse21I	CCTNAGG	1 cut(s)	7
Bse3DI	GCAATG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	21, 170
BseNI	ACTGG	2 cut(s)	80, 269
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	12
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	325, 412
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	20, 171
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	80, 269
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	325, 412
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	403
BstDEI	CTNAG	3 cut(s)	7, 179, 380
BstF5I	GGATG	1 cut(s)	414
BstKTI	GATC	2 cut(s)	328, 415
BstMBI	GATC	2 cut(s)	325, 412
BstNSI	RCATGY	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	246
BstSNI	TACGTA	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
Bsu36I	CCTNAGG	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	183, 400
CviAII	CATG	3 cut(s)	258, 340, 362
CviJI	RGCY	5 cut(s)	5, 79, 164, 191, 384
CviKI_1	RGCY	5 cut(s)	5, 79, 164, 191, 384
CviQI	GTAC	2 cut(s)	183, 400
DdeI	CTNAG	3 cut(s)	7, 179, 380
DpnI	GATC	2 cut(s)	327, 414
DpnII	GATC	2 cut(s)	325, 412
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco105I	TACGTA	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	215
Eco81I	CCTNAGG	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	261, 343, 365
FatI	CATG	3 cut(s)	257, 339, 361
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	195, 353
GluI	GCNGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	261, 343, 365
Hpy166II	GTNNAC	2 cut(s)	111, 121
Hpy188III	TCNNGA	5 cut(s)	169, 200, 289, 316, 452
Hpy8I	GTNNAC	2 cut(s)	111, 121
HpyAV	CCTTC	3 cut(s)	197, 441, 451
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	3 cut(s)	281, 309, 402
HpyCH4V	TGCA	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	7, 179, 380
HpySE526I	ACGT	3 cut(s)	281, 309, 402
Hsp92II	CATG	3 cut(s)	261, 343, 365
Kzo9I	GATC	2 cut(s)	325, 412
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	9 cut(s)	78, 93, 114, 218, 236, 250, 287, 450, 451
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	195, 353
MaeII	ACGT	3 cut(s)	281, 309, 402
MaeIII	GTNAC	3 cut(s)	225, 260, 342
MalI	GATC	2 cut(s)	327, 414
MboI	GATC	2 cut(s)	325, 412
MboII	GAAGA	5 cut(s)	28, 40, 367, 412, 415
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	4 cut(s)	16, 44, 127, 270
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	293
NdeII	GATC	2 cut(s)	325, 412
NlaIII	CATG	3 cut(s)	261, 343, 365
NlaIV	GGNNCC	1 cut(s)	78
NspI	RCATGY	1 cut(s)	365
OliI	CACNNNNGTG	1 cut(s)	293
PciI	ACATGT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	403
PscI	ACATGT	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	2 cut(s)	184, 401
RsaNI	GTAC	2 cut(s)	183, 400
RseI	CAYNNNNRTG	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	2 cut(s)	325, 412
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	13, 36, 188, 208, 284, 312, 401, 405
SmiMI	CAYNNNNRTG	1 cut(s)	293
SnaBI	TACGTA	1 cut(s)	403
SpeI	ACTAGT	1 cut(s)	352
Sse9I	AATT	1 cut(s)	145
SspI	AATATT	1 cut(s)	59
SspMI	CTAG	2 cut(s)	195, 353
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	3 cut(s)	284, 312, 405
TasI	AATT	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	1 cut(s)	209
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	2 cut(s)	195, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.