Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Reverse (-)

4597673 .. 4600854

Gene Structure 3182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGTTTTCCCATTGTCTTGGGTTTTGGATATTCTGTCGAGAATTTGTTGGAGAGAACTTAATCGAGAAGAACCAGCTGGCATGGCCTGGGTGGGCCTCATTCTGGATGTTATGTTCTCGATTCTAGAGGTGCTCTTGTTTCCCGGGAAGGGCTTATACTTGGACATTGCCTTGTTTTTTCTATTCTGGTTGTGCAGACAAATTACATTCAGTCTTCTTTTTTCTTTCGTGATCGCTTTCGTACCAGACACTCTGAGTGCAGCACCTGATAAAGCATCTGTCCTGTCCCGGGTAATGGCAGCCGGAAATGATCCAAATCTTGAGGGCTTTGTCATTACCTTAAGGCCGGCTTGGGATGTACACTTGATGTTAATACAAGATGCTCTTACCGGAAGGGATTCTATTTCAAGTGGTTCATCGAGTGATTTGGGTTACCTACAGTTGTGCTTGGAAAATGATGAAGAGGATATGTGCAAAGCCTATCTTCAAAAGTTGATCACCTATTCACCTGCTTCTTACTCACCCACTTGCCAGAGACAAGGTCAGTTGATATTTTTCATTCAGTATAAAGTCAATCTAGTTTGTATATTTTATGGTAAAAAAATTCATTCATCTCAGTTATTTCACAAGAAGAAAAAGAACAAAACAGGGGTTCTGTTGAATTTCAAATATTTAGTTTCACCTACCTGTGTATTTGGATTATTTTGTTCTACCCCCTCCTTTCCAAAATTTAGTTTTCTGTTTCAACTCCTTTCAGGTCAAAGAATCAAAGAATTAAAGGAGAGGGCTATGAGCGTGCTTAGTCCATACTGCCTGGTTGGGTCACATGAGCTTTCGCATGATAGTAACCAAACCGCACAAGCCTCTGAAAGTGGTCCTCTACCATTTGTCTCTCTTTTGGAGTTTAAGGAGCCAGAGCAATTGTCTGGCAATGACGCCCTGTGGACATTTGTGAACTTTGCTGGAGAGTACGATACAAATTTTCAAACTCTTGTGGCTCTCTTGAATATGCTGAGTACCTTGGCTTCTATTCAAGAAGGTGCTGCAACGGTTTTGGAGTTACTTCAGGGCAAAGTGTTTCGTTATGTTGGGTGGAGCACCTTGTTTGACAGCTTGTCAATTTATAAAGAGAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

379

Amino Acids

42.7

Weight (kDa)

5.81

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1125
AarI	CACCTGC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	517
AciI	CCGC	1 cut(s)	855
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	5 cut(s)	42, 603, 661, 728, 979
AcuI	CTGAAG	1 cut(s)	1049
AcyI	GRCGYC	1 cut(s)	936
AfaI	GTAC	4 cut(s)	243, 360, 971, 1018
AfiI	CCNNNNNNNGG	4 cut(s)	103, 149, 289, 295
AflII	CTTAAG	1 cut(s)	340
AgsI	TTSAA	8 cut(s)	408, 488, 661, 667, 746, 986, 1006, 1034
AhdI	GACNNNNNGTC	1 cut(s)	1114
AjnI	CCWGG	2 cut(s)	86, 813
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	3 cut(s)	77, 832, 1113
AluI	AGCT	3 cut(s)	77, 832, 1113
Alw21I	GWGCWC	2 cut(s)	135, 1100
Alw26I	GTCTC	2 cut(s)	529, 895
AlwI	GGATC	1 cut(s)	305
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	2 cut(s)	143, 288
AoxI	GGCC	3 cut(s)	84, 94, 344
ApeKI	GCWGC	3 cut(s)	260, 299, 1043
ApoI	RAATTY	5 cut(s)	42, 603, 661, 728, 979
Asp700I	GAANNNNTTC	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	94, 875
AsuC2I	CCSGG	4 cut(s)	144, 145, 289, 290
AsuHPI	GGTGA	4 cut(s)	490, 498, 513, 672
AvaI	CYCGRG	2 cut(s)	143, 288
AvaII	GGWCC	1 cut(s)	875
BarI	GAAGNNNNNNTAC	4 cut(s)	140, 172, 1009, 1041
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	135, 1100
BbvI	GCAGC	3 cut(s)	272, 311, 1030
BciT130I	CCWGG	2 cut(s)	88, 815
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	4 cut(s)	144, 145, 289, 290
BcoDI	GTCTC	2 cut(s)	529, 895
BfaI	CTAG	2 cut(s)	125, 578
BfmI	CTRYAG	1 cut(s)	437
BfrI	CTTAAG	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	3 cut(s)	261, 300, 1044
BlsI	GCNGC	3 cut(s)	262, 301, 1045
Bme1390I	CCNGG	6 cut(s)	88, 144, 145, 289, 290, 815
Bme18I	GGWCC	1 cut(s)	875
BmeRI	GACNNNNNGTC	1 cut(s)	1114
BmeT110I	CYCGRG	2 cut(s)	143, 288
BmgT120I	GGNCC	2 cut(s)	94, 875
BmiI	GGNNCC	1 cut(s)	912
BmrFI	CCNGG	6 cut(s)	88, 144, 145, 289, 290, 815
BmsI	GCATC	2 cut(s)	284, 370
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	984
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	4 cut(s)	144, 145, 289, 290
BsaBI	GATNNNNATC	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	936
BsaJI	CCNNGG	4 cut(s)	87, 143, 288, 1020
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 149, 289, 295
Bse118I	RCCGGY	1 cut(s)	346
Bse3DI	GCAATG	2 cut(s)	165, 937
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	88, 815
BseDI	CCNNGG	4 cut(s)	87, 143, 288, 1020
BseGI	GGATG	2 cut(s)	112, 361
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	4 cut(s)	103, 149, 289, 295
BseMI	GCAATG	2 cut(s)	165, 937
BseMII	CTCAG	3 cut(s)	245, 629, 1004
BseXI	GCAGC	3 cut(s)	272, 311, 1030
BsgI	GTGCAG	2 cut(s)	214, 279
BshFI	GGCC	3 cut(s)	86, 96, 346
BsiHKAI	GWGCWC	2 cut(s)	135, 1100
BsiHKCI	CYCGRG	2 cut(s)	143, 288
BsiSI	CCGG	5 cut(s)	144, 289, 303, 347, 390
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	4 cut(s)	103, 149, 289, 295
BsmAI	GTCTC	2 cut(s)	529, 895
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	86, 96, 346
BsoBI	CYCGRG	2 cut(s)	143, 288
Bsp1286I	GDGCHC	2 cut(s)	135, 1100
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	231, 310, 495
BspACI	CCGC	1 cut(s)	855
BspANI	GGCC	3 cut(s)	86, 96, 346
BspCNI	CTCAG	3 cut(s)	246, 628, 1005
BspLI	GGNNCC	1 cut(s)	912
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	1 cut(s)	305
BspTI	CTTAAG	1 cut(s)	340
BsrDI	GCAATG	2 cut(s)	165, 937
BsrFI	RCCGGY	1 cut(s)	346
BsrGI	TGTACA	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	4 cut(s)	87, 143, 288, 1020
BssMI	GATC	3 cut(s)	231, 310, 495
BssNI	GRCGYC	1 cut(s)	936
BssT1I	CCWWGG	1 cut(s)	1020
Bst2UI	CCWGG	2 cut(s)	88, 815
Bst4CI	ACNGT	2 cut(s)	441, 1051
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	1 cut(s)	936
BstAFI	CTTAAG	1 cut(s)	340
BstAUI	TGTACA	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	79, 348, 797
BstDEI	CTNAG	4 cut(s)	254, 615, 800, 1013
BstEII	GGTNACC	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	112, 361
BstKTI	GATC	3 cut(s)	234, 313, 498
BstMAI	GTCTC	2 cut(s)	529, 895
BstMBI	GATC	3 cut(s)	231, 310, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	2 cut(s)	88, 815
BstPI	GGTNACC	1 cut(s)	431
BstSCI	CCNGG	6 cut(s)	86, 142, 143, 287, 288, 813
BstSFI	CTRYAG	1 cut(s)	437
BstV1I	GCAGC	3 cut(s)	272, 311, 1030
BstV2I	GAAGAC	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	86, 96, 346
BtsCI	GGATG	2 cut(s)	112, 361
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	3 cut(s)	79, 348, 797
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	94, 875
Cfr9I	CCCGGG	2 cut(s)	143, 288
CseI	GACGC	1 cut(s)	944
Csp6I	GTAC	4 cut(s)	242, 359, 970, 1017
CviAII	CATG	3 cut(s)	82, 827, 839
CviQI	GTAC	4 cut(s)	242, 359, 970, 1017
DdeI	CTNAG	4 cut(s)	254, 615, 800, 1013
DpnI	GATC	3 cut(s)	233, 312, 497
DpnII	GATC	3 cut(s)	231, 310, 495
DriI	GACNNNNNGTC	1 cut(s)	1114
Eam1104I	CTCTTC	1 cut(s)	456
Eam1105I	GACNNNNNGTC	1 cut(s)	1114
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	1020
Eco47I	GGWCC	1 cut(s)	875
Eco57I	CTGAAG	1 cut(s)	1049
Eco88I	CYCGRG	2 cut(s)	143, 288
Eco91I	GGTNACC	1 cut(s)	431
EcoO65I	GGTNACC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	86, 813
EcoT14I	CCWWGG	1 cut(s)	1020
ErhI	CCWWGG	1 cut(s)	1020
FaeI	CATG	3 cut(s)	85, 830, 842
FalI	AAGNNNNNCTT	6 cut(s)	334, 366, 369, 401, 468, 500
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	3 cut(s)	81, 826, 838
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	261, 300, 1044
FokI	GGATG	2 cut(s)	119, 368
Fsp4HI	GCNGC	3 cut(s)	261, 300, 1044
FspBI	CTAG	2 cut(s)	125, 578
GluI	GCNGC	3 cut(s)	261, 300, 1044
GsuI	CTGGAG	1 cut(s)	984
HaeIII	GGCC	3 cut(s)	86, 96, 346
HapII	CCGG	5 cut(s)	144, 289, 303, 347, 390
HgaI	GACGC	1 cut(s)	944
Hin1I	GRCGYC	1 cut(s)	936
Hin1II	CATG	3 cut(s)	85, 830, 842
HinfI	GANTC	3 cut(s)	121, 398, 765
HpaII	CCGG	5 cut(s)	144, 289, 303, 347, 390
HphI	GGTGA	4 cut(s)	490, 498, 513, 672
Hpy166II	GTNNAC	3 cut(s)	361, 945, 955
Hpy188I	TCNGA	2 cut(s)	255, 868
Hpy188III	TCNNGA	9 cut(s)	39, 65, 104, 118, 125, 229, 320, 1003, 1034
Hpy8I	GTNNAC	3 cut(s)	361, 945, 955
HpyAV	CCTTC	3 cut(s)	142, 387, 1031
HpyCH4III	ACNGT	2 cut(s)	441, 1051
HpyCH4V	TGCA	4 cut(s)	195, 260, 474, 1046
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	4 cut(s)	254, 615, 800, 1013
Hsp92I	GRCGYC	1 cut(s)	936
Hsp92II	CATG	3 cut(s)	85, 830, 842
KroI	GCCGGC	1 cut(s)	346
KroNI	GCCGGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	3 cut(s)	231, 310, 495
LmnI	GCTCC	2 cut(s)	910, 1095
Lsp1109I	GCAGC	3 cut(s)	272, 311, 1030
LweI	GCATC	2 cut(s)	284, 370
MaeI	CTAG	2 cut(s)	125, 578
MaeIII	GTNAC	4 cut(s)	431, 822, 845, 1059
MalI	GATC	3 cut(s)	233, 312, 497
MboI	GATC	3 cut(s)	231, 310, 495
MboII	GAAGA	5 cut(s)	80, 206, 473, 476, 643
MfeI	CAATTG	1 cut(s)	920
MhlI	GDGCHC	2 cut(s)	135, 1100
MluCI	AATT	9 cut(s)	42, 201, 603, 661, 728, 773, 920, 979, 1119
MmeI	TCCRAC	1 cut(s)	29
MnlI	CCTC	8 cut(s)	107, 121, 316, 457, 727, 777, 874, 888
MroNI	GCCGGC	1 cut(s)	346
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	6 cut(s)	60, 341, 371, 776, 906, 1138
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	5 cut(s)	144, 289, 303, 347, 390
MspR9I	CCNGG	6 cut(s)	88, 144, 145, 289, 290, 815
MunI	CAATTG	1 cut(s)	920
MvaI	CCWGG	2 cut(s)	88, 815
MwoI	GCNNNNNNNGC	1 cut(s)	83
NaeI	GCCGGC	1 cut(s)	348
NciI	CCSGG	4 cut(s)	144, 145, 289, 290
NdeII	GATC	3 cut(s)	231, 310, 495
NgoMIV	GCCGGC	1 cut(s)	346
NlaIII	CATG	3 cut(s)	85, 830, 842
NlaIV	GGNNCC	1 cut(s)	912
NmuCI	GTSAC	1 cut(s)	822
PaqCI	CACCTGC	1 cut(s)	517
PdiI	GCCGGC	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	121, 398, 765
PflFI	GACNNNGTC	1 cut(s)	540
PkrI	GCNGC	3 cut(s)	262, 301, 1045
PsiI	TTATAA	1 cut(s)	1125
Psp6I	CCWGG	2 cut(s)	86, 813
PspEI	GGTNACC	1 cut(s)	431
PspGI	CCWGG	2 cut(s)	86, 813
PspN4I	GGNNCC	1 cut(s)	912
PspPI	GGNCC	2 cut(s)	94, 875
PstNI	CAGNNNCTG	1 cut(s)	266
PsyI	GACNNNGTC	1 cut(s)	540
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	4 cut(s)	243, 360, 971, 1018
RsaNI	GTAC	4 cut(s)	242, 359, 970, 1017
SaqAI	TTAA	6 cut(s)	60, 341, 371, 776, 906, 1138
SatI	GCNGC	3 cut(s)	261, 300, 1044
Sau3AI	GATC	3 cut(s)	231, 310, 495
Sau96I	GGNCC	2 cut(s)	94, 875
ScrFI	CCNGG	6 cut(s)	88, 144, 145, 289, 290, 815
SduI	GDGCHC	2 cut(s)	135, 1100
SfaNI	GCATC	2 cut(s)	284, 370
SfcI	CTRYAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	875
SmaI	CCCGGG	2 cut(s)	145, 290
SmlI	CTYRAG	2 cut(s)	320, 340
SmoI	CTYRAG	2 cut(s)	320, 340
Sse9I	AATT	9 cut(s)	42, 201, 603, 661, 728, 773, 920, 979, 1119
SsiI	CCGC	1 cut(s)	855
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	2 cut(s)	125, 578
StyD4I	CCNGG	6 cut(s)	86, 142, 143, 287, 288, 813
StyI	CCWWGG	1 cut(s)	1020
TaaI	ACNGT	2 cut(s)	441, 1051
TaqI	TCGA	4 cut(s)	38, 64, 119, 419
TasI	AATT	9 cut(s)	42, 201, 603, 661, 728, 773, 920, 979, 1119
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	3 cut(s)	121, 398, 765
Tru1I	TTAA	6 cut(s)	60, 341, 371, 776, 906, 1138
Tru9I	TTAA	6 cut(s)	60, 341, 371, 776, 906, 1138
TseFI	GTSAC	1 cut(s)	822
TseI	GCWGC	3 cut(s)	260, 299, 1043
Tsp45I	GTSAC	1 cut(s)	822
TspDTI	ATGAA	5 cut(s)	405, 474, 547, 596, 600
TspMI	CCCGGG	2 cut(s)	143, 288
Tth111I	GACNNNGTC	1 cut(s)	540
Vha464I	CTTAAG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	875
XapI	RAATTY	5 cut(s)	42, 603, 661, 728, 979
XbaI	TCTAGA	1 cut(s)	124
XmaI	CCCGGG	2 cut(s)	143, 288
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	2 cut(s)	125, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.