Rh5AG053000

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001803
Physical Location & Seq
Reverse (-)
4485886 .. 4493226
7341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG053000.1

Sequence Viewer

Length: 1194 bp
ATGACGATTTCTTCTTACGTCGACGGCGGTTTTCGGAGTTATGAAGCAATTGCTACACCCGAGCCAACGGAACTTAATCGAGAAGAACCAGCTGGCATGGCCTGGGTGGGCCTCATTCTGAACACAAGTAAGCAACATGTTTATGCTTGTTTGAACAAAACCAAGGATAGTGACGGTCCAAAGAATATTACATTCAGTCTTCTTTTTTCTTTTGTGATCGCTTTCGTACCAGACACTCTGAGTGCAGCACCTGATAAAGCATCTGTTCTGTCCCAGGTAATGGCAGCCGGAAATCATCCAAATCTTGAGGGCTTTGTCATTACCATAAGGCCGGCTTGGGATAATATGTACAACGCCTATCTTCAGAAGTTGATCACCTATTCACCTGCTTCTTACTCACCCACTTGCCAGAGACAAGGTCAAAGAATCAAAGAATTAAAGGAGAGGGCTATGAGCGTGCTTAGTCCATACTGCCTGGTTGGGTTACATGAGCTTTCGCATGATAGTAACCAAACTGCGCAAGCCTCTGAAAGTGGTCCTCTACCATTGGTCTCTCTTTTGGAGTTTGTGAGTGGAATTTATCGGGGTTTTGCTGTGGAAACATTTCGGTACTTTGGAAAATACGGGGTGGGCAACCGATCAGGCTCTTGCAATATACAAAATACGGGGTGGGCAACCGATCAGGCTCTTGCAATATACATTGGCAGGTCATTGTTTCCTACCGCTGTGTACAAGTTTCAAGACTTCTTCTTCAAGAAGTGTTCTGATGATGTTGCCAAGTATGTGGTGGCCCTGGGTCCATCTGATGATGCAGTTAAGTTTTTGATTCCTGTGTATGTTGAGTACTGTTTGGAAGAACTCATTAAGCGTTTTATGAGCACCATTATATATGAGAGGTTTAAGCCATTGGTGGTTGAAGCAAAAACTCCCTGGGAGATCTTAAGAATGTCATGTCTGGAGACTGCGTGGTTGCCTTTTCAAGGAGAGAGGTGTTTGAGGTTAAAGTTGCCATCGAAAAACATACCAACCACTGCTGTTGTGTTATTTATGGGGCCTTACCCCTGGGAACTTGCAGACAGCCAGCAAATTTATTTAATGATCAAGATAATGAATTTGATGTGCTGGTTTCTACTGATGCGGTGGGAATGGGTCTCAATCTCAATATCAGGAGGGTTGTCTTCTGCAGTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

397

Amino Acids

44.62

Weight (kDa)

6.89

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DExH18_N PF23703 220 - 287 6e-28 DExH-box ATP-dependent RNA helicase DExH18, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1192
AarI CACCTGC 1 cut(s) 394
Acc16I TGCGCA 1 cut(s) 519
Acc36I ACCTGC 2 cut(s) 394, 696
AccB7I CCANNNNNTGG 1 cut(s) 280
AccI GTMKAC 1 cut(s) 21
AciI CCGC 3 cut(s) 27, 723, 1138
AcsI RAATTY 3 cut(s) 576, 1086, 1111
AcuI CTGAAG 1 cut(s) 347
AfaI GTAC 5 cut(s) 228, 350, 611, 731, 845
AfiI CCNNNNNNNGG 2 cut(s) 280, 980
AflII CTTAAG 1 cut(s) 940
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 5 cut(s) 154, 740, 754, 917, 980
AjnI CCWGG 6 cut(s) 101, 273, 474, 792, 929, 1061
AluBI AGCT 2 cut(s) 92, 493
AluI AGCT 2 cut(s) 92, 493
Alw21I GWGCWC 1 cut(s) 881
Alw26I GTCTC 4 cut(s) 406, 556, 953, 1156
AlwNI CAGNNNCTG 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 5 cut(s) 99, 109, 329, 789, 1052
ApeKI GCWGC 2 cut(s) 245, 284
ApoI RAATTY 3 cut(s) 576, 1086, 1111
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 6 cut(s) 109, 176, 536, 790, 797, 1052
AsuHPI GGTGA 3 cut(s) 367, 375, 390
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 3 cut(s) 176, 536, 797
BbsI GAAGAC 2 cut(s) 191, 1170
Bbv12I GWGCWC 1 cut(s) 881
BbvI GCAGC 2 cut(s) 257, 296
BccI CCATC 2 cut(s) 808, 1018
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 6 cut(s) 103, 275, 476, 794, 931, 1063
BclI TGATCA 2 cut(s) 372, 1098
BcoDI GTCTC 4 cut(s) 406, 556, 953, 1156
BfmI CTRYAG 1 cut(s) 1182
BfrI CTTAAG 1 cut(s) 940
BfuAI ACCTGC 2 cut(s) 394, 696
BglII AGATCT 1 cut(s) 936
BisI GCNGC 2 cut(s) 246, 285
BlsI GCNGC 2 cut(s) 247, 286
BmcAI AGTACT 1 cut(s) 845
Bme1390I CCNGG 6 cut(s) 103, 275, 476, 794, 931, 1063
Bme18I GGWCC 3 cut(s) 176, 536, 797
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 6 cut(s) 109, 176, 536, 790, 797, 1052
BmiI GGNNCC 2 cut(s) 798, 1053
BmrFI CCNGG 6 cut(s) 103, 275, 476, 794, 931, 1063
BmsI GCATC 3 cut(s) 269, 799, 1125
BpiI GAAGAC 2 cut(s) 191, 1170
BpmI CTGGAG 1 cut(s) 977
BpuEI CTTGAG 1 cut(s) 326
BsaI GGTCTC 2 cut(s) 556, 1156
BsaJI CCNNGG 9 cut(s) 102, 162, 273, 792, 793, 929, 930, 1061, 1062
BsaXI ACNNNNNCTCC 2 cut(s) 950, 980
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 980
Bse118I RCCGGY 1 cut(s) 331
BseBI CCWGG 6 cut(s) 103, 275, 476, 794, 931, 1063
BseDI CCNNGG 9 cut(s) 102, 162, 273, 792, 793, 929, 930, 1061, 1062
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 2 cut(s) 280, 980
BseMII CTCAG 1 cut(s) 230
BseXI GCAGC 2 cut(s) 257, 296
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 5 cut(s) 101, 111, 331, 791, 1054
BsiHKAI GWGCWC 1 cut(s) 881
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 2 cut(s) 288, 332
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 280, 980
BsmAI GTCTC 4 cut(s) 406, 556, 953, 1156
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 5 cut(s) 101, 111, 331, 791, 1054
Bso31I GGTCTC 2 cut(s) 556, 1156
BsoBI CYCGRG 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 881
Bsp1407I TGTACA 2 cut(s) 348, 729
Bsp143I GATC 6 cut(s) 216, 372, 638, 679, 936, 1098
BspACI CCGC 3 cut(s) 27, 723, 1138
BspANI GGCC 5 cut(s) 101, 111, 331, 791, 1054
BspCNI CTCAG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 798, 1053
BspMAI CTGCAG 1 cut(s) 1186
BspMI ACCTGC 2 cut(s) 394, 696
BspTI CTTAAG 1 cut(s) 940
BspTNI GGTCTC 2 cut(s) 556, 1156
BsrFI RCCGGY 1 cut(s) 331
BsrGI TGTACA 2 cut(s) 348, 729
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 9 cut(s) 102, 162, 273, 792, 793, 929, 930, 1061, 1062
BssMI GATC 6 cut(s) 216, 372, 638, 679, 936, 1098
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 6 cut(s) 103, 275, 476, 794, 931, 1063
Bst4CI ACNGT 2 cut(s) 176, 848
BstAFI CTTAAG 1 cut(s) 940
BstAUI TGTACA 2 cut(s) 348, 729
BstC8I GCNNGC 5 cut(s) 94, 333, 458, 522, 1082
BstDEI CTNAG 2 cut(s) 239, 461
BstENI CCTNNNNNAGG 1 cut(s) 978
BstF5I GGATG 1 cut(s) 295
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 6 cut(s) 219, 375, 641, 682, 939, 1101
BstMAI GTCTC 4 cut(s) 406, 556, 953, 1156
BstMBI GATC 6 cut(s) 216, 372, 638, 679, 936, 1098
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 6 cut(s) 103, 275, 476, 794, 931, 1063
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 6 cut(s) 101, 273, 474, 792, 929, 1061
BstSFI CTRYAG 1 cut(s) 1182
BstV1I GCAGC 2 cut(s) 257, 296
BstV2I GAAGAC 2 cut(s) 191, 1170
BstX2I RGATCY 1 cut(s) 936
BstXI CCANNNNNNTGG 1 cut(s) 784
BstYI RGATCY 1 cut(s) 936
BsuRI GGCC 5 cut(s) 101, 111, 331, 791, 1054
BtsCI GGATG 1 cut(s) 295
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 1 cut(s) 1029
BveI ACCTGC 2 cut(s) 394, 696
Cac8I GCNNGC 5 cut(s) 94, 333, 458, 522, 1082
CaiI CAGNNNCTG 1 cut(s) 251
CfoI GCGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 6 cut(s) 109, 176, 536, 790, 797, 1052
Csp6I GTAC 5 cut(s) 227, 349, 610, 730, 844
CspCI CAANNNNNGTGG 2 cut(s) 1018, 1053
CviAII CATG 5 cut(s) 97, 137, 488, 500, 951
CviQI GTAC 5 cut(s) 227, 349, 610, 730, 844
DdeI CTNAG 2 cut(s) 239, 461
DpnI GATC 6 cut(s) 218, 374, 640, 681, 938, 1100
DpnII GATC 6 cut(s) 216, 372, 638, 679, 936, 1098
Eco130I CCWWGG 1 cut(s) 162
Eco31I GGTCTC 2 cut(s) 556, 1156
Eco47I GGWCC 3 cut(s) 176, 536, 797
Eco57I CTGAAG 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 59
EcoNI CCTNNNNNAGG 1 cut(s) 978
EcoO109I RGGNCCY 1 cut(s) 1052
EcoRII CCWGG 6 cut(s) 101, 273, 474, 792, 929, 1061
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 5 cut(s) 100, 140, 491, 503, 954
FalI AAGNNNNNCTT 2 cut(s) 319, 351
FaqI GGGAC 1 cut(s) 256
FatI CATG 5 cut(s) 96, 136, 487, 499, 950
FbaI TGATCA 2 cut(s) 372, 1098
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 246, 285
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 246, 285
FspI TGCGCA 1 cut(s) 519
GlaI GCGC 1 cut(s) 519
GluI GCNGC 2 cut(s) 246, 285
GsuI CTGGAG 1 cut(s) 977
HaeIII GGCC 5 cut(s) 101, 111, 331, 791, 1054
HapII CCGG 2 cut(s) 288, 332
HhaI GCGC 1 cut(s) 520
Hin1II CATG 5 cut(s) 100, 140, 491, 503, 954
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 426, 826
HpaII CCGG 2 cut(s) 288, 332
HphI GGTGA 3 cut(s) 367, 375, 390
Hpy166II GTNNAC 2 cut(s) 22, 730
Hpy188I TCNGA 7 cut(s) 36, 120, 240, 366, 529, 766, 805
Hpy188III TCNNGA 7 cut(s) 80, 305, 740, 754, 956, 1102, 1167
Hpy8I GTNNAC 2 cut(s) 22, 730
Hpy99I CGWCG 2 cut(s) 23, 26
HpyCH4III ACNGT 2 cut(s) 176, 848
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 6 cut(s) 245, 651, 692, 812, 1073, 1184
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 239, 461
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 5 cut(s) 100, 140, 491, 503, 954
HspAI GCGC 1 cut(s) 518
KroI GCCGGC 1 cut(s) 331
KroNI GCCGGC 1 cut(s) 333
Ksp22I TGATCA 2 cut(s) 372, 1098
Kzo9I GATC 6 cut(s) 216, 372, 638, 679, 936, 1098
Lsp1109I GCAGC 2 cut(s) 257, 296
LweI GCATC 3 cut(s) 269, 799, 1125
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 170, 483, 506
MalI GATC 6 cut(s) 218, 374, 640, 681, 938, 1100
MboI GATC 6 cut(s) 216, 372, 638, 679, 936, 1098
MboII GAAGA 8 cut(s) 3, 95, 191, 353, 739, 742, 866, 1170
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 1 cut(s) 936
MhlI GDGCHC 1 cut(s) 881
MluCI AATT 5 cut(s) 48, 434, 576, 1086, 1111
MnlI CCTC 9 cut(s) 122, 301, 438, 535, 549, 888, 981, 990, 1163
MroNI GCCGGC 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 8 cut(s) 75, 437, 816, 864, 900, 941, 1001, 1094
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 2 cut(s) 92, 725
MspCI CTTAAG 1 cut(s) 940
MspI CCGG 2 cut(s) 288, 332
MspR9I CCNGG 6 cut(s) 103, 275, 476, 794, 931, 1063
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 6 cut(s) 103, 275, 476, 794, 931, 1063
MwoI GCNNNNNNNGC 1 cut(s) 98
NaeI GCCGGC 1 cut(s) 333
NdeII GATC 6 cut(s) 216, 372, 638, 679, 936, 1098
NgoMIV GCCGGC 1 cut(s) 331
NlaIII CATG 5 cut(s) 100, 140, 491, 503, 954
NlaIV GGNNCC 2 cut(s) 798, 1053
NmuCI GTSAC 1 cut(s) 170
NsbI TGCGCA 1 cut(s) 519
NspI RCATGY 1 cut(s) 140
PaqCI CACCTGC 1 cut(s) 394
PasI CCCWGGG 3 cut(s) 793, 930, 1062
PciI ACATGT 1 cut(s) 136
PdiI GCCGGC 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 2 cut(s) 426, 826
PflFI GACNNNGTC 1 cut(s) 417
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 2 cut(s) 247, 286
PscI ACATGT 1 cut(s) 136
PsiI TTATAA 1 cut(s) 1192
Psp6I CCWGG 6 cut(s) 101, 273, 474, 792, 929, 1061
PspGI CCWGG 6 cut(s) 101, 273, 474, 792, 929, 1061
PspN4I GGNNCC 2 cut(s) 798, 1053
PspPI GGNCC 6 cut(s) 109, 176, 536, 790, 797, 1052
PstI CTGCAG 1 cut(s) 1186
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 936
PsyI GACNNNGTC 1 cut(s) 417
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 5 cut(s) 228, 350, 611, 731, 845
RsaNI GTAC 5 cut(s) 227, 349, 610, 730, 844
RseI CAYNNNNRTG 1 cut(s) 141
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 8 cut(s) 75, 437, 816, 864, 900, 941, 1001, 1094
SatI GCNGC 2 cut(s) 246, 285
Sau3AI GATC 6 cut(s) 216, 372, 638, 679, 936, 1098
Sau96I GGNCC 6 cut(s) 109, 176, 536, 790, 797, 1052
ScaI AGTACT 1 cut(s) 845
ScrFI CCNGG 6 cut(s) 103, 275, 476, 794, 931, 1063
SduI GDGCHC 1 cut(s) 881
SfaNI GCATC 3 cut(s) 269, 799, 1125
SfcI CTRYAG 1 cut(s) 1182
SgrDI CGTCGACG 1 cut(s) 20
SinI GGWCC 3 cut(s) 176, 536, 797
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 305, 940
SmoI CTYRAG 2 cut(s) 305, 940
Sse9I AATT 5 cut(s) 48, 434, 576, 1086, 1111
SsiI CCGC 3 cut(s) 27, 723, 1138
SspI AATATT 1 cut(s) 187
StyD4I CCNGG 6 cut(s) 101, 273, 474, 792, 929, 1061
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 176, 848
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 21, 79, 1013
TasI AATT 5 cut(s) 48, 434, 576, 1086, 1111
TatI WGTACW 3 cut(s) 348, 729, 843
TfiI GAWTC 2 cut(s) 426, 826
Tru1I TTAA 8 cut(s) 75, 437, 816, 864, 900, 941, 1001, 1094
Tru9I TTAA 8 cut(s) 75, 437, 816, 864, 900, 941, 1001, 1094
TscAI CASTG 1 cut(s) 1036
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 245, 284
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 57, 1124
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 1036
Tth111I GACNNNGTC 1 cut(s) 417
Van91I CCANNNNNTGG 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 940
VpaK11BI GGWCC 3 cut(s) 176, 536, 797
XagI CCTNNNNNAGG 1 cut(s) 978
XapI RAATTY 3 cut(s) 576, 1086, 1111
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 784
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 603
ZrmI AGTACT 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.