Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Forward (+)

5417417 .. 5417830

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATTTACTTCTGCTTCTCTTCTCGCAAACACGATTTTATGTATATCCATTTATTCAGTAGTATGTTTTTGTCTATTTGTGTTTGCTATTCATATATTTCACGTTTTTTGCAGATTACATTCAGTCTTCTTTTTTCTTTTGTGATCGCTTTCGTACCAGACACTCTGAGTGCAGCACCTGATAAAGCATCTGTTCTGTCCCAGGTGCCTCTTTTCGACATAAATTTCATGAAATTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTGTGATTTTTTCTTCTTGTTGTTTATGAACCTTGTGTTTGGACATTGCTGCTCATCATTTGAGCTTCAGGTAATGGCAGCCGGAAATGATCCAAATCTTGAGGGCTTTGTCATTACCATAAGGCCGGCTTGGGATGTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

137

Amino Acids

15.92

Weight (kDa)

8.93

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	156, 408
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
AlwI	GGATC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	179
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	173, 318, 347
ApoI	RAATTY	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	185, 305, 359
BciT130I	CCWGG	1 cut(s)	203
BfaI	CTAG	1 cut(s)	412
BisI	GCNGC	3 cut(s)	174, 319, 348
BlsI	GCNGC	3 cut(s)	175, 320, 349
Bme1390I	CCNGG	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	158
BseXI	GCAGC	3 cut(s)	185, 305, 359
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	394
BshNI	GGYRCC	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	351, 395
BslFI	GGGAC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	144, 358
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	394
BsrGI	TGTACA	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	144, 358
Bst2UI	CCWGG	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	2 cut(s)	147, 361
BstMBI	GATC	2 cut(s)	144, 358
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	185, 305, 359
BstV2I	GAAGAC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	179
CciI	TCATGA	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	155, 407
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	5 cut(s)	334, 350, 375, 394, 398
CviKI_1	RGCY	5 cut(s)	334, 350, 375, 394, 398
CviQI	GTAC	2 cut(s)	155, 407
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	146, 360
DpnII	GATC	2 cut(s)	144, 358
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	232
FaiI	YATR	9 cut(s)	41, 45, 65, 94, 96, 221, 230, 296, 389
FalI	AAGNNNNNCTT	2 cut(s)	382, 414
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	174, 319, 348
Fsp4HI	GCNGC	3 cut(s)	174, 319, 348
FspBI	CTAG	1 cut(s)	412
GluI	GCNGC	3 cut(s)	174, 319, 348
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	2 cut(s)	351, 395
Hin1II	CATG	1 cut(s)	232
HpaII	CCGG	2 cut(s)	351, 395
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	229, 368
Hpy8I	GTNNAC	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	112, 173
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	232
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	144, 358
LpnPI	CCDG	7 cut(s)	171, 188, 192, 215, 323, 364, 408
Lsp1109I	GCAGC	3 cut(s)	185, 305, 359
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	412
MaeII	ACGT	1 cut(s)	103
MalI	GATC	2 cut(s)	146, 360
MboI	GATC	2 cut(s)	144, 358
MboII	GAAGA	3 cut(s)	12, 119, 274
MluCI	AATT	2 cut(s)	223, 233
MnlI	CCTC	2 cut(s)	219, 364
MroNI	GCCGGC	1 cut(s)	394
MseI	TTAA	1 cut(s)	239
MspI	CCGG	2 cut(s)	351, 395
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
NaeI	GCCGGC	1 cut(s)	396
NdeII	GATC	2 cut(s)	144, 358
NgoMIV	GCCGGC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	207
PagI	TCATGA	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	396
PkrI	GCNGC	3 cut(s)	175, 320, 349
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	156, 408
RsaNI	GTAC	2 cut(s)	155, 407
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	3 cut(s)	174, 319, 348
Sau3AI	GATC	2 cut(s)	144, 358
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	6 cut(s)	106, 181, 207, 303, 336, 342
SfaNI	GCATC	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	223, 233
SspMI	CTAG	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	201
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	216
TasI	AATT	2 cut(s)	223, 233
TatI	WGTACW	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseI	GCWGC	3 cut(s)	173, 318, 347
TspDTI	ATGAA	4 cut(s)	81, 217, 245, 311
XapI	RAATTY	1 cut(s)	223
XspI	CTAG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.