Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026502.1

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Forward (+)

1342 .. 2239

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026502.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgtacaacgcctatcttcagaagttgatcacctattcacctgcttcttactcacccacttgccagagacaaggtcaaagaatcaaagaattaaaggagagggctatgagcgtgcttagtccatactgcctggttgggttacatgagctttcgcatgatagtaaccaaactgcacaagcctctgaaagtggtcctctaccatttgtctctcttttggagtttgtgagtggaatttatcggaaggagccagagcagttgtctggcaatgacgtcttgtggacatttttgaactttgctggaggggacgatacaaattttcaaactcttgtggctctcttgaatatgctgagtaccttgacttctagtcaagaaggtgctgcaactgttttggagttacttctgggtgcagtgtttcattctgttggtggagcaccttgtttgatagcttgtcatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

152

Amino Acids

16.54

Weight (kDa)

5.21

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
AatII	GACGTC	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	231, 313
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	2 cut(s)	5, 352
AgsI	TTSAA	3 cut(s)	289, 320, 340
AhdI	GACNNNNNGTC	1 cut(s)	363
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	148, 446
AluI	AGCT	2 cut(s)	148, 446
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	2 cut(s)	61, 211
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	2 cut(s)	231, 313
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	22, 30, 45
AvaII	GGWCC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	61, 211
BfaI	CTAG	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	191
BmeRI	GACNNNNNGTC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	364
BsgI	GTGCAG	2 cut(s)	156, 426
BsiHKAI	GWGCWC	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	317
BsmAI	GTCTC	2 cut(s)	61, 211
BsmFI	GGGAC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	3
BssMI	GATC	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	385
BstACI	GRCGYC	1 cut(s)	270
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	116, 347
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	2 cut(s)	61, 211
BstMBI	GATC	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	4, 351
CviAII	CATG	2 cut(s)	143, 155
CviJI	RGCY	6 cut(s)	104, 148, 179, 247, 332, 446
CviKI_1	RGCY	6 cut(s)	104, 148, 179, 247, 332, 446
CviQI	GTAC	2 cut(s)	4, 351
DdeI	CTNAG	2 cut(s)	116, 347
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
DriI	GACNNNNNGTC	1 cut(s)	363
Eam1105I	GACNNNNNGTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	146, 158
FaiI	YATR	8 cut(s)	107, 124, 144, 156, 344, 453, 455, 457
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	2 cut(s)	142, 154
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	378
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	2 cut(s)	146, 158
HinfI	GANTC	1 cut(s)	81
HphI	GGTGA	3 cut(s)	22, 30, 45
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	3 cut(s)	21, 184, 240
Hpy188III	TCNNGA	2 cut(s)	337, 368
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	2 cut(s)	235, 365
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	173, 380, 407
HpyF3I	CTNAG	2 cut(s)	116, 347
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	146, 158
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	244, 428
LpnPI	CCDG	8 cut(s)	54, 77, 116, 143, 246, 261, 282, 386
Lsp1109I	GCAGC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	138, 161, 393
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	3 cut(s)	89, 231, 313
MnlI	CCTC	4 cut(s)	93, 190, 204, 293
MseI	TTAA	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	2 cut(s)	146, 158
NlaIV	GGNNCC	1 cut(s)	246
PaqCI	CACCTGC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	72
RsaI	GTAC	2 cut(s)	5, 352
RsaNI	GTAC	2 cut(s)	4, 351
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	9 cut(s)	35, 43, 76, 150, 273, 356, 376, 436, 448
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	3 cut(s)	89, 231, 313
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	273
TasI	AATT	3 cut(s)	89, 231, 313
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	414
Tth111I	GACNNNGTC	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	2 cut(s)	231, 313
XspI	CTAG	1 cut(s)	363
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.