Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Reverse (-)

5258540 .. 5261296

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031448

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGACTTCACAAAAGTATTTATCAATTTTCAAAAAGGAATCTTCTTCTATCATTGATATGGAACTTAATCGATCGGCCTGGGTGGGCCTCATTCTGGACGTTATGTTCTCGATTCTAGAGGTGCTCTTGTTTCCCAGGAAGGGCTTATACTTGGACATTGCCTCGTTTTTTCTATTCTGGTTGTGCAGACAAATTACATTCAGTCTTCTTTTTTCTTTCGTGATCGCTTTCATACTAGCCACTCTGAGTGCAGCACCTGATAAAGCATCTGTCCTGTCCCGGGTAATGGCAGCCGGAAATGATCCAAATCTTGAGGGCTTTGTCATTACCATAAGGCCGGCTTGGGATGTACACTTGATGTTAATAAAAGATGCTCTTACCGGAAGGGATTCTATTTCAGGTGGTTCATCGAGTGATTTGGGTTATCTACAGTTGTGCTTGGAAAATGATGAAGAGGATATGTGCAACGCCTATCTTCAAAAGTTGATCACCTATTCACCTGCTTCTTACTCACCCACTTGCCAGAGACAAGGTCAGTTGATATTTTTCATTCAGTATAAAGTCAATCTAGTTTGTATATTTTATGGTAAAAAAATTCATTCATCTCAGTTATTTCACAAGAAGAAAACAGTGGTTCTGTTGAATTTCAAATATTTAGTTTCACCTACCTGTGTATTTGGATTATTTTGTTCTACCCCCTCCTTTCCAAAATTTAGTTTTCTGTTTCAACTCCTTTCAGGTCAAAGAATCAAAGAATTAAAGGAGAGGGCTATGAGCGTGCTTAGTCCATACTGCCTAGTTGGGTCACATGCGCTTTCGCATGATAGTAACCAAACTGCACAAGCCTCTGAAAGTGGTCCTCTACCATTTGTCTCTCTTTTGGAGTTTAAGGAGCCAGAGCAATTGTCTGGCAATGACGCCTTGTGGACATTTGTGAACTTTGCTGGAGAGGACGATACAAATTTTCAAACTCTTGTGGCTCTCTTGAATATGCTGAGTACCTTGGCTTCTAGTCAAGAAGGTGCTGCAACGGTTTTGGAGTTACTTCAGGGCAAAGTGTTTCGTTCTGTTGGGTGGAGCACCTTGTTTGATAGCTTGTCAATTTATAAAGAGAAGTTTTTAACAGTCCCTTGCTGGTGCCATGTTACTGGAACTCCCAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

389

Amino Acids

43.36

Weight (kDa)

6.6

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1107
AarI	CACCTGC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	508
AccB1I	GGYRCC	1 cut(s)	1137
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	4 cut(s)	594, 643, 710, 961
AcuI	CTGAAG	1 cut(s)	1031
AcyI	GRCGYC	1 cut(s)	918
AfaI	GTAC	2 cut(s)	351, 1000
AfiI	CCNNNNNNNGG	4 cut(s)	94, 140, 280, 286
AgsI	TTSAA	7 cut(s)	31, 479, 643, 649, 728, 968, 988
AjnI	CCWGG	2 cut(s)	77, 134
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
AluBI	AGCT	1 cut(s)	1095
AluI	AGCT	1 cut(s)	1095
Alw21I	GWGCWC	2 cut(s)	126, 1082
Alw26I	GTCTC	2 cut(s)	520, 877
AlwI	GGATC	1 cut(s)	296
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	3 cut(s)	75, 85, 335
ApeKI	GCWGC	3 cut(s)	251, 290, 1025
ApoI	RAATTY	4 cut(s)	594, 643, 710, 961
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	2 cut(s)	85, 857
AsuC2I	CCSGG	2 cut(s)	280, 281
AsuHPI	GGTGA	4 cut(s)	481, 489, 504, 654
AvaI	CYCGRG	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	857
BanI	GGYRCC	1 cut(s)	1137
BarI	GAAGNNNNNNTAC	4 cut(s)	131, 163, 991, 1023
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	2 cut(s)	126, 1082
BbvI	GCAGC	3 cut(s)	263, 302, 1012
BciT130I	CCWGG	2 cut(s)	79, 136
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	2 cut(s)	280, 281
BcoDI	GTCTC	2 cut(s)	520, 877
BfaI	CTAG	5 cut(s)	116, 236, 569, 797, 1011
BfmI	CTRYAG	1 cut(s)	428
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	3 cut(s)	252, 291, 1026
BlsI	GCNGC	3 cut(s)	253, 292, 1027
Bme1390I	CCNGG	4 cut(s)	79, 136, 280, 281
Bme18I	GGWCC	1 cut(s)	857
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	2 cut(s)	85, 857
BmiI	GGNNCC	2 cut(s)	894, 1139
BmrFI	CCNGG	4 cut(s)	79, 136, 280, 281
BmsI	GCATC	2 cut(s)	275, 361
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	966
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	2 cut(s)	280, 281
Bsa29I	ATCGAT	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	918
BsaJI	CCNNGG	4 cut(s)	78, 134, 279, 1002
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	1 cut(s)	1138
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 140, 280, 286
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	1153
Bse3DI	GCAATG	2 cut(s)	156, 919
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	79, 136
BseCI	ATCGAT	1 cut(s)	70
BseDI	CCNNGG	4 cut(s)	78, 134, 279, 1002
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	4 cut(s)	94, 140, 280, 286
BseMI	GCAATG	2 cut(s)	156, 919
BseMII	CTCAG	3 cut(s)	236, 620, 986
BseNI	ACTGG	1 cut(s)	1153
BseXI	GCAGC	3 cut(s)	263, 302, 1012
BsgI	GTGCAG	3 cut(s)	205, 270, 822
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	77, 87, 337
BshNI	GGYRCC	1 cut(s)	1137
BshVI	ATCGAT	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	2 cut(s)	126, 1082
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	4 cut(s)	280, 294, 338, 381
BslFI	GGGAC	2 cut(s)	262, 1112
BslI	CCNNNNNNNGG	4 cut(s)	94, 140, 280, 286
BsmAI	GTCTC	2 cut(s)	520, 877
BsmFI	GGGAC	2 cut(s)	262, 1112
BsnI	GGCC	3 cut(s)	77, 87, 337
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	126, 1082
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	71, 222, 301, 486
BspANI	GGCC	3 cut(s)	77, 87, 337
BspCNI	CTCAG	3 cut(s)	237, 619, 987
BspDI	ATCGAT	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	894, 1139
BspMI	ACCTGC	1 cut(s)	508
BspPI	GGATC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	1137
BsrDI	GCAATG	2 cut(s)	156, 919
BsrFI	RCCGGY	1 cut(s)	337
BsrGI	TGTACA	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	1153
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	4 cut(s)	78, 134, 279, 1002
BssMI	GATC	4 cut(s)	71, 222, 301, 486
BssNI	GRCGYC	1 cut(s)	918
BssT1I	CCWWGG	1 cut(s)	1002
Bst2UI	CCWGG	2 cut(s)	79, 136
Bst4CI	ACNGT	4 cut(s)	432, 631, 1033, 1126
Bst6I	CTCTTC	1 cut(s)	447
BstACI	GRCGYC	1 cut(s)	918
BstAUI	TGTACA	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	339, 779
BstDEI	CTNAG	4 cut(s)	245, 606, 782, 995
BstF5I	GGATG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	4 cut(s)	74, 225, 304, 489
BstMAI	GTCTC	2 cut(s)	520, 877
BstMBI	GATC	4 cut(s)	71, 222, 301, 486
BstMCI	CGRYCG	1 cut(s)	74
BstNI	CCWGG	2 cut(s)	79, 136
BstNSI	RCATGY	1 cut(s)	812
BstSCI	CCNGG	4 cut(s)	77, 134, 278, 279
BstSFI	CTRYAG	1 cut(s)	428
BstV1I	GCAGC	3 cut(s)	263, 302, 1012
BstV2I	GAAGAC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	1148
Bsu15I	ATCGAT	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	77, 87, 337
BsuTUI	ATCGAT	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	636
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	339, 779
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	814
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	85, 857
Cfr9I	CCCGGG	1 cut(s)	279
ClaI	ATCGAT	1 cut(s)	70
CseI	GACGC	1 cut(s)	926
Csp6I	GTAC	2 cut(s)	350, 999
CviAII	CATG	3 cut(s)	809, 821, 1142
CviQI	GTAC	2 cut(s)	350, 999
DdeI	CTNAG	4 cut(s)	245, 606, 782, 995
DpnI	GATC	4 cut(s)	73, 224, 303, 488
DpnII	GATC	4 cut(s)	71, 222, 301, 486
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	1002
Eco47I	GGWCC	1 cut(s)	857
Eco57I	CTGAAG	1 cut(s)	1031
Eco88I	CYCGRG	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	77, 134
EcoT14I	CCWWGG	1 cut(s)	1002
ErhI	CCWWGG	1 cut(s)	1002
FaeI	CATG	3 cut(s)	812, 824, 1145
FalI	AAGNNNNNCTT	4 cut(s)	325, 357, 360, 392
FaqI	GGGAC	2 cut(s)	262, 1112
FatI	CATG	3 cut(s)	808, 820, 1141
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	252, 291, 1026
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	3 cut(s)	252, 291, 1026
FspBI	CTAG	5 cut(s)	116, 236, 569, 797, 1011
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	3 cut(s)	252, 291, 1026
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	3 cut(s)	77, 87, 337
HapII	CCGG	4 cut(s)	280, 294, 338, 381
HgaI	GACGC	1 cut(s)	926
HhaI	GCGC	1 cut(s)	814
Hin1I	GRCGYC	1 cut(s)	918
Hin1II	CATG	3 cut(s)	812, 824, 1145
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HinfI	GANTC	4 cut(s)	38, 112, 389, 747
HpaII	CCGG	4 cut(s)	280, 294, 338, 381
HphI	GGTGA	4 cut(s)	481, 489, 504, 654
Hpy166II	GTNNAC	3 cut(s)	352, 927, 937
Hpy188I	TCNGA	2 cut(s)	246, 850
Hpy188III	TCNNGA	7 cut(s)	95, 109, 116, 220, 311, 985, 1016
Hpy8I	GTNNAC	3 cut(s)	352, 927, 937
HpyAV	CCTTC	3 cut(s)	133, 378, 1013
HpyCH4III	ACNGT	4 cut(s)	432, 631, 1033, 1126
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	186, 251, 465, 839, 1028
HpyF3I	CTNAG	4 cut(s)	245, 606, 782, 995
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	918
Hsp92II	CATG	3 cut(s)	812, 824, 1145
HspAI	GCGC	1 cut(s)	812
KroI	GCCGGC	1 cut(s)	337
KroNI	GCCGGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	71, 222, 301, 486
LmnI	GCTCC	2 cut(s)	892, 1077
Lsp1109I	GCAGC	3 cut(s)	263, 302, 1012
LweI	GCATC	2 cut(s)	275, 361
MaeI	CTAG	5 cut(s)	116, 236, 569, 797, 1011
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	4 cut(s)	804, 827, 1041, 1144
MalI	GATC	4 cut(s)	73, 224, 303, 488
MboI	GATC	4 cut(s)	71, 222, 301, 486
MboII	GAAGA	6 cut(s)	33, 36, 197, 464, 467, 634
MfeI	CAATTG	1 cut(s)	902
MhlI	GDGCHC	2 cut(s)	126, 1082
MluCI	AATT	9 cut(s)	24, 192, 594, 643, 710, 755, 902, 961, 1101
MroNI	GCCGGC	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	5 cut(s)	66, 362, 758, 888, 1121
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	4 cut(s)	280, 294, 338, 381
MspR9I	CCNGG	4 cut(s)	79, 136, 280, 281
MunI	CAATTG	1 cut(s)	902
MvaI	CCWGG	2 cut(s)	79, 136
NaeI	GCCGGC	1 cut(s)	339
NciI	CCSGG	2 cut(s)	280, 281
NdeII	GATC	4 cut(s)	71, 222, 301, 486
NgoMIV	GCCGGC	1 cut(s)	337
NlaIII	CATG	3 cut(s)	812, 824, 1145
NlaIV	GGNNCC	2 cut(s)	894, 1139
NmuCI	GTSAC	1 cut(s)	804
NspI	RCATGY	1 cut(s)	812
PaqCI	CACCTGC	1 cut(s)	508
PdiI	GCCGGC	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	38, 112, 389, 747
PflFI	GACNNNGTC	1 cut(s)	531
PkrI	GCNGC	3 cut(s)	253, 292, 1027
Ple19I	CGATCG	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	1107
Psp6I	CCWGG	2 cut(s)	77, 134
PspGI	CCWGG	2 cut(s)	77, 134
PspN4I	GGNNCC	2 cut(s)	894, 1139
PspPI	GGNCC	2 cut(s)	85, 857
PstNI	CAGNNNCTG	1 cut(s)	257
PsyI	GACNNNGTC	1 cut(s)	531
PvuI	CGATCG	1 cut(s)	74
RsaI	GTAC	2 cut(s)	351, 1000
RsaNI	GTAC	2 cut(s)	350, 999
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	5 cut(s)	66, 362, 758, 888, 1121
SatI	GCNGC	3 cut(s)	252, 291, 1026
Sau3AI	GATC	4 cut(s)	71, 222, 301, 486
Sau96I	GGNCC	2 cut(s)	85, 857
ScrFI	CCNGG	4 cut(s)	79, 136, 280, 281
SduI	GDGCHC	2 cut(s)	126, 1082
SfaNI	GCATC	2 cut(s)	275, 361
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	857
SmaI	CCCGGG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	9 cut(s)	24, 192, 594, 643, 710, 755, 902, 961, 1101
SspI	AATATT	1 cut(s)	653
SspMI	CTAG	5 cut(s)	116, 236, 569, 797, 1011
StyD4I	CCNGG	4 cut(s)	77, 134, 278, 279
StyI	CCWWGG	1 cut(s)	1002
TaaI	ACNGT	4 cut(s)	432, 631, 1033, 1126
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	70, 110, 410
TasI	AATT	9 cut(s)	24, 192, 594, 643, 710, 755, 902, 961, 1101
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	4 cut(s)	38, 112, 389, 747
Tru1I	TTAA	5 cut(s)	66, 362, 758, 888, 1121
Tru9I	TTAA	5 cut(s)	66, 362, 758, 888, 1121
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	1 cut(s)	804
TseI	GCWGC	3 cut(s)	251, 290, 1025
Tsp45I	GTSAC	1 cut(s)	804
TspDTI	ATGAA	6 cut(s)	220, 396, 465, 538, 587, 591
TspMI	CCCGGG	1 cut(s)	279
TspRI	CASTG	1 cut(s)	636
Tth111I	GACNNNGTC	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	857
XapI	RAATTY	4 cut(s)	594, 643, 710, 961
XbaI	TCTAGA	1 cut(s)	115
XceI	RCATGY	1 cut(s)	812
XmaI	CCCGGG	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	5 cut(s)	116, 236, 569, 797, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.