Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Reverse (-)

5325637 .. 5330239

Gene Structure 4603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031451

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCGTCAAAATTTTTCTCTCTCTCAGAGGCCCGTGCGGTGGCGGATCCCTCCTTTCAGGCGAAGGTGCAACTCGCTGAACTTAATCGAGAAGAACGAGCTGGCATGGCCTGGGTGGGCCTCATTCTGAACGTTATGTTCTCGATTCTAGAGATTACATTCAGTCTTCTTTTTTCTTTCGTGATCGCTTTCGTACCAGACACTCTGAGTGCAGCACCTGATAAAGCATCTGTCCTGTCCCAGGTAATGGCAGCCGGAAATGATCCAAATCTTGAGGGCTTTGTCATTACCATAAGGCCAGCTTGGGATGTACACTTGATGTTAATAGATGATGCTCTTACCGGAAGGGATTCTATTTCAAGTGGTTCATCGAGTGATTTGGGTTATCTACAGTTGTGCTTGGAAAATGATGACAAGGATATAAGCTATATGTACGACGCCTATCTTCAGAAGTTGATCACCTATTCACCTGCTTCTTACTCACCCACTTGCCAGAGACAAGGTCAGTTGATATTTTTCATTCAGTATAAAGTCAATCCAGTTTGTATTAATTTGTTCTACCTTTTTCTGTTTCAACTCCTTTCAGGTCAAAGAATCAAAGAATTAAAGGAGAGGGCTATGAGCGTGCTTAGTCCATACTGCCTGGTTGGGTTACATGAGCTTTTGCATGATAGTAACCAAACTGCACGAGCCTCTGAAAGTGGTCCTCTACCATTTGTCTCTCTTTTGGAGTTTAAGGAGCCAGAGCAGTTGTCTGGCAATGACGTCTTGTGGACATTTTTGAACTTTGCTGGAGGGGACGATACAAATTTTCAAACTCTTGTGGCTCTCTTGAATATGCTGAGTACCTTGACTTCTAGTCAAGAAGGTGCTGCAACGGTTTTGGAGTTACTTCTGGGTGCAGTGTTTCATTCTGTTGGTGGAGCACCTTGTTTGATAGCTTGTCATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

318

Amino Acids

34.84

Weight (kDa)

4.62

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	478
AatII	GACGTC	1 cut(s)	768
Acc36I	ACCTGC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	247
AciI	CCGC	2 cut(s)	38, 44
AclI	AACGTT	1 cut(s)	132
AclWI	GGATC	3 cut(s)	41, 54, 257
AcsI	RAATTY	2 cut(s)	11, 808
AcuI	CTGAAG	1 cut(s)	431
AcyI	GRCGYC	2 cut(s)	438, 765
AfaI	GTAC	4 cut(s)	195, 312, 434, 847
AfiI	CCNNNNNNNGG	3 cut(s)	40, 241, 247
AgsI	TTSAA	5 cut(s)	360, 575, 784, 815, 835
AhdI	GACNNNNNGTC	1 cut(s)	858
AjnI	CCWGG	3 cut(s)	110, 240, 642
AluBI	AGCT	5 cut(s)	101, 302, 426, 661, 941
AluI	AGCT	5 cut(s)	101, 302, 426, 661, 941
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	2 cut(s)	490, 724
AlwI	GGATC	3 cut(s)	41, 54, 257
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	4 cut(s)	30, 108, 118, 296
ApeKI	GCWGC	3 cut(s)	212, 251, 872
ApoI	RAATTY	2 cut(s)	11, 808
AseI	ATTAAT	1 cut(s)	549
Asp700I	GAANNNNTTC	1 cut(s)	349
AspS9I	GGNCC	3 cut(s)	31, 118, 704
AsuHPI	GGTGA	3 cut(s)	451, 459, 474
AvaII	GGWCC	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	838, 870
BauI	CACGAG	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	3 cut(s)	224, 263, 859
BciT130I	CCWGG	3 cut(s)	112, 242, 644
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	2 cut(s)	490, 724
BfaI	CTAG	2 cut(s)	149, 858
BfmI	CTRYAG	1 cut(s)	389
BfuAI	ACCTGC	1 cut(s)	478
BisI	GCNGC	3 cut(s)	213, 252, 873
BlsI	GCNGC	3 cut(s)	214, 253, 874
Bme1390I	CCNGG	3 cut(s)	112, 242, 644
Bme18I	GGWCC	1 cut(s)	704
BmeRI	GACNNNNNGTC	1 cut(s)	858
BmgT120I	GGNCC	3 cut(s)	31, 118, 704
BmiI	GGNNCC	2 cut(s)	48, 741
BmrFI	CCNGG	3 cut(s)	112, 242, 644
BmsI	GCATC	2 cut(s)	236, 322
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	2 cut(s)	438, 765
BsaJI	CCNNGG	2 cut(s)	111, 240
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 241, 247
Bse1I	ACTGG	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	766
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	3 cut(s)	112, 242, 644
BseDI	CCNNGG	2 cut(s)	111, 240
BseGI	GGATG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	40, 241, 247
BseMI	GCAATG	1 cut(s)	766
BseMII	CTCAG	3 cut(s)	39, 197, 833
BseNI	ACTGG	1 cut(s)	539
BseXI	GCAGC	3 cut(s)	224, 263, 859
BsgI	GTGCAG	3 cut(s)	231, 669, 921
BshFI	GGCC	4 cut(s)	32, 110, 120, 298
BsiHKAI	GWGCWC	1 cut(s)	928
BsiSI	CCGG	2 cut(s)	255, 342
BslFI	GGGAC	2 cut(s)	223, 812
BslI	CCNNNNNNNGG	3 cut(s)	40, 241, 247
BsmAI	GTCTC	2 cut(s)	490, 724
BsmFI	GGGAC	2 cut(s)	223, 812
BsnI	GGCC	4 cut(s)	32, 110, 120, 298
Bsp1286I	GDGCHC	1 cut(s)	928
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	4 cut(s)	46, 183, 262, 456
BspACI	CCGC	2 cut(s)	38, 44
BspANI	GGCC	4 cut(s)	32, 110, 120, 298
BspCNI	CTCAG	3 cut(s)	38, 198, 834
BspLI	GGNNCC	2 cut(s)	48, 741
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	3 cut(s)	41, 54, 257
BsrDI	GCAATG	1 cut(s)	766
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	111, 240
BssMI	GATC	4 cut(s)	46, 183, 262, 456
BssNI	GRCGYC	2 cut(s)	438, 765
BssSI	CACGAG	1 cut(s)	687
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	3 cut(s)	112, 242, 644
Bst4CI	ACNGT	2 cut(s)	393, 880
BstACI	GRCGYC	2 cut(s)	438, 765
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	103, 300, 626
BstDEI	CTNAG	4 cut(s)	25, 206, 629, 842
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	4 cut(s)	49, 186, 265, 459
BstMAI	GTCTC	2 cut(s)	490, 724
BstMBI	GATC	4 cut(s)	46, 183, 262, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	3 cut(s)	112, 242, 644
BstSCI	CCNGG	3 cut(s)	110, 240, 642
BstSFI	CTRYAG	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	224, 263, 859
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	4 cut(s)	32, 110, 120, 298
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	1 cut(s)	909
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	3 cut(s)	103, 300, 626
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	31, 118, 704
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	4 cut(s)	194, 311, 433, 846
CviAII	CATG	3 cut(s)	106, 656, 668
CviQI	GTAC	4 cut(s)	194, 311, 433, 846
DdeI	CTNAG	4 cut(s)	25, 206, 629, 842
DpnI	GATC	4 cut(s)	48, 185, 264, 458
DpnII	GATC	4 cut(s)	46, 183, 262, 456
DriI	GACNNNNNGTC	1 cut(s)	858
Eam1105I	GACNNNNNGTC	1 cut(s)	858
EciI	GGCGGA	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	110, 240, 642
FaeI	CATG	3 cut(s)	109, 659, 671
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	2 cut(s)	223, 812
FatI	CATG	3 cut(s)	105, 655, 667
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	3 cut(s)	213, 252, 873
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	3 cut(s)	213, 252, 873
FspBI	CTAG	2 cut(s)	149, 858
GluI	GCNGC	3 cut(s)	213, 252, 873
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	4 cut(s)	32, 110, 120, 298
HapII	CCGG	2 cut(s)	255, 342
HgaI	GACGC	1 cut(s)	446
Hin1I	GRCGYC	2 cut(s)	438, 765
Hin1II	CATG	3 cut(s)	109, 659, 671
HinfI	GANTC	3 cut(s)	145, 350, 594
HpaII	CCGG	2 cut(s)	255, 342
HphI	GGTGA	3 cut(s)	451, 459, 474
Hpy166II	GTNNAC	2 cut(s)	313, 774
Hpy188I	TCNGA	5 cut(s)	28, 129, 207, 450, 697
Hpy188III	TCNNGA	7 cut(s)	89, 142, 149, 181, 272, 832, 863
Hpy8I	GTNNAC	2 cut(s)	313, 774
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	3 cut(s)	58, 339, 860
HpyCH4III	ACNGT	2 cut(s)	393, 880
HpyCH4IV	ACGT	2 cut(s)	132, 765
HpyCH4V	TGCA	6 cut(s)	70, 212, 667, 686, 875, 902
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	4 cut(s)	25, 206, 629, 842
HpySE526I	ACGT	2 cut(s)	132, 765
Hsp92I	GRCGYC	2 cut(s)	438, 765
Hsp92II	CATG	3 cut(s)	109, 659, 671
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	4 cut(s)	46, 183, 262, 456
LmnI	GCTCC	2 cut(s)	739, 923
Lsp1109I	GCAGC	3 cut(s)	224, 263, 859
LweI	GCATC	2 cut(s)	236, 322
MaeI	CTAG	2 cut(s)	149, 858
MaeII	ACGT	2 cut(s)	132, 765
MaeIII	GTNAC	3 cut(s)	651, 674, 888
MalI	GATC	4 cut(s)	48, 185, 264, 458
MboI	GATC	4 cut(s)	46, 183, 262, 456
MboII	GAAGA	3 cut(s)	104, 158, 437
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	928
MluCI	AATT	4 cut(s)	11, 550, 602, 808
MnlI	CCTC	8 cut(s)	22, 61, 131, 268, 606, 703, 717, 788
MroXI	GAANNNNTTC	1 cut(s)	349
MseI	TTAA	5 cut(s)	84, 323, 549, 605, 735
MspI	CCGG	2 cut(s)	255, 342
MspR9I	CCNGG	3 cut(s)	112, 242, 644
MvaI	CCWGG	3 cut(s)	112, 242, 644
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	4 cut(s)	46, 183, 262, 456
NlaIII	CATG	3 cut(s)	109, 659, 671
NlaIV	GGNNCC	2 cut(s)	48, 741
PaqCI	CACCTGC	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	3 cut(s)	145, 350, 594
PflFI	GACNNNGTC	1 cut(s)	501
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	214, 253, 874
PshBI	ATTAAT	1 cut(s)	549
Psp1406I	AACGTT	1 cut(s)	132
Psp6I	CCWGG	3 cut(s)	110, 240, 642
PspGI	CCWGG	3 cut(s)	110, 240, 642
PspN4I	GGNNCC	2 cut(s)	48, 741
PspPI	GGNCC	3 cut(s)	31, 118, 704
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	501
RsaI	GTAC	4 cut(s)	195, 312, 434, 847
RsaNI	GTAC	4 cut(s)	194, 311, 433, 846
SaqAI	TTAA	5 cut(s)	84, 323, 549, 605, 735
SatI	GCNGC	3 cut(s)	213, 252, 873
Sau3AI	GATC	4 cut(s)	46, 183, 262, 456
Sau96I	GGNCC	3 cut(s)	31, 118, 704
ScrFI	CCNGG	3 cut(s)	112, 242, 644
SduI	GDGCHC	1 cut(s)	928
SfaNI	GCATC	2 cut(s)	236, 322
SfcI	CTRYAG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	4 cut(s)	11, 550, 602, 808
SsiI	CCGC	2 cut(s)	38, 44
SspMI	CTAG	2 cut(s)	149, 858
StyD4I	CCNGG	3 cut(s)	110, 240, 642
TaaI	ACNGT	2 cut(s)	393, 880
TaiI	ACGT	2 cut(s)	135, 768
TaqI	TCGA	3 cut(s)	88, 143, 371
TasI	AATT	4 cut(s)	11, 550, 602, 808
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	3 cut(s)	145, 350, 594
Tru1I	TTAA	5 cut(s)	84, 323, 549, 605, 735
Tru9I	TTAA	5 cut(s)	84, 323, 549, 605, 735
TscAI	CASTG	1 cut(s)	909
TseI	GCWGC	3 cut(s)	212, 251, 872
TspDTI	ATGAA	3 cut(s)	357, 508, 899
TspRI	CASTG	1 cut(s)	909
Tth111I	GACNNNGTC	1 cut(s)	501
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	704
VspI	ATTAAT	1 cut(s)	549
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	11, 808
XbaI	TCTAGA	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	349
XspI	CTAG	2 cut(s)	149, 858
ZraI	GACGTC	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.