Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Reverse (-)

4471931 .. 4476331

Gene Structure 4401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG060600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCTCTTACTGGAAGGGATTCTATTTCAAGTGGTTCATCAAGTGATTTGGGTTATCTACGGTTGTGCTTGGAAGTGTTTTTTTTCAAAGAACAATATGTACAACGCCTATCTTCAGAAGTTGATCACCTATTCACCTGCTTCTTACTCACCCACTTGCCAGAGACAAGGTCAAAGAATCAAAGAATTAAAGGAGAGGGCTATGAGCGTGCTTAGTCCATACTGCCTGGTTGGGTTACATGAGCTTTCTCATGATAGTAACCAAACTGCACAAGCCTCTGAAAGTGGTCCTCTACCATTTGTCTCTCTTTTGGAGTTTGTGAGTGGAATTTATCGGAGAAGTTTTAAACAGTCCCTTGCTGGTGCCATGTTACTGGAACTCCCAGAGGATGATGCTGATTTGAATCTCCTTCAAAAGGATCTACATTGCAATGTACATACATATATGAGAATTAGATACACGGTGATTAAGACACAAACTGCAATCTCCCTCATCAGACGATCAAAATCAGGAGAATTTGCGCAATGCTTGAACGGGAATACTGCAGGGATCACTTCTCCTGCCTTGAAGCTCCTCACGCAAGACTGTCCTCACAAAATTCTTGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

203

Amino Acids

22.95

Weight (kDa)

8.65

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc16I	TGCGCA	1 cut(s)	522
Acc36I	ACCTGC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	426, 557
AcsI	RAATTY	3 cut(s)	327, 515, 597
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	2 cut(s)	101, 435
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	6 cut(s)	29, 87, 403, 413, 532, 568
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	244, 571, 607
AluI	AGCT	3 cut(s)	244, 571, 607
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	2 cut(s)	157, 307
AlwI	GGATC	2 cut(s)	426, 557
ApoI	RAATTY	3 cut(s)	327, 515, 597
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	4 cut(s)	118, 126, 141, 475
AvaII	GGWCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	609
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	157, 307
BfaI	CTAG	1 cut(s)	610
BfmI	CTRYAG	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	382
BsaBI	GATNNNNATC	2 cut(s)	402, 505
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	15, 378
Bse3DI	GCAATG	3 cut(s)	424, 436, 530
Bse8I	GATNNNNATC	2 cut(s)	402, 505
BseBI	CCWGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	394
BseJI	GATNNNNATC	2 cut(s)	402, 505
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	3 cut(s)	424, 436, 530
BseNI	ACTGG	2 cut(s)	15, 378
BseRI	GAGGAG	1 cut(s)	563
BsgI	GTGCAG	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	609
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	2 cut(s)	157, 307
BsmFI	GGGAC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp1407I	TGTACA	2 cut(s)	99, 433
Bsp143I	GATC	4 cut(s)	123, 418, 500, 549
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	364
BspMAI	CTGCAG	1 cut(s)	547
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	426, 557
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	3 cut(s)	424, 436, 530
BsrGI	TGTACA	2 cut(s)	99, 433
BsrI	ACTGG	2 cut(s)	15, 378
BssMI	GATC	4 cut(s)	123, 418, 500, 549
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	4 cut(s)	62, 351, 463, 587
BstAUI	TGTACA	2 cut(s)	99, 433
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	212
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	4 cut(s)	126, 421, 503, 552
BstMAI	GTCTC	2 cut(s)	157, 307
BstMBI	GATC	4 cut(s)	123, 418, 500, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	577
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	209
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	100, 434
CviAII	CATG	3 cut(s)	239, 251, 367
CviJI	RGCY	5 cut(s)	200, 244, 275, 571, 607
CviKI_1	RGCY	5 cut(s)	200, 244, 275, 571, 607
CviQI	GTAC	2 cut(s)	100, 434
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	4 cut(s)	125, 420, 502, 551
DpnII	GATC	4 cut(s)	123, 418, 500, 549
DraI	TTTAAA	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	607
Eco24I	GRGCYC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	607
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	609
FaeI	CATG	3 cut(s)	242, 254, 370
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	3 cut(s)	238, 250, 366
FbaI	TGATCA	1 cut(s)	123
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	609
FspBI	CTAG	1 cut(s)	610
FspI	TGCGCA	1 cut(s)	522
GlaI	GCGC	1 cut(s)	522
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	3 cut(s)	242, 254, 370
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HinfI	GANTC	3 cut(s)	19, 177, 403
HphI	GGTGA	4 cut(s)	118, 126, 141, 475
Hpy188I	TCNGA	4 cut(s)	117, 280, 336, 497
Hpy188III	TCNNGA	3 cut(s)	251, 510, 602
HpyAV	CCTTC	2 cut(s)	8, 419
HpyCH4III	ACNGT	4 cut(s)	62, 351, 463, 587
HpyCH4V	TGCA	4 cut(s)	269, 429, 482, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	577
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	242, 254, 370
HspAI	GCGC	1 cut(s)	521
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	4 cut(s)	123, 418, 500, 549
LmnI	GCTCC	1 cut(s)	576
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	610
MaeIII	GTNAC	3 cut(s)	234, 257, 369
MalI	GATC	4 cut(s)	125, 420, 502, 551
MboI	GATC	4 cut(s)	123, 418, 500, 549
MboII	GAAGA	1 cut(s)	104
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	609
MluCI	AATT	5 cut(s)	185, 327, 450, 515, 597
MnlI	CCTC	7 cut(s)	189, 286, 300, 379, 500, 584, 600
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	3 cut(s)	188, 345, 468
MslI	CAYNNNNRTG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	577
NdeII	GATC	4 cut(s)	123, 418, 500, 549
NlaIII	CATG	3 cut(s)	242, 254, 370
NlaIV	GGNNCC	1 cut(s)	364
NsbI	TGCGCA	1 cut(s)	522
PagI	TCATGA	1 cut(s)	250
PaqCI	CACCTGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	19, 177, 403
PflFI	GACNNNGTC	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	287
PsrI	GAACNNNNNNTAC	2 cut(s)	83, 115
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	168
RsaI	GTAC	2 cut(s)	101, 435
RsaNI	GTAC	2 cut(s)	100, 434
RseI	CAYNNNNRTG	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	188, 345, 468
Sau3AI	GATC	4 cut(s)	123, 418, 500, 549
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	609
SetI	ASST	6 cut(s)	131, 139, 172, 246, 573, 609
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	5 cut(s)	185, 327, 450, 515, 597
SspMI	CTAG	1 cut(s)	610
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	4 cut(s)	62, 351, 463, 587
TasI	AATT	5 cut(s)	185, 327, 450, 515, 597
TatI	WGTACW	2 cut(s)	99, 433
TfiI	GAWTC	3 cut(s)	19, 177, 403
Tru1I	TTAA	3 cut(s)	188, 345, 468
Tru9I	TTAA	3 cut(s)	188, 345, 468
TspDTI	ATGAA	1 cut(s)	26
Tth111I	GACNNNGTC	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	413
XapI	RAATTY	3 cut(s)	327, 515, 597
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.