Rh5CG061000

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001803
Physical Location & Seq
Reverse (-)
4530508 .. 4535445
4938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG061000.1

Sequence Viewer

Length: 426 bp
ATGGCTCTGCTTTTGCTTATCCATTGGACCTCATATTTACTTTCTTTTGTAAATAATTTTTTCCAGAAGGAGCCAGAGCAATTGTCTGGCAATGACGCCTTGTGGACATTTGTGAACTTTGCTGGAGAGTACGATACAAATTTTCAAACTCTTGTGGCTCTCTTGAATATGCTGAGTACCTTGCTTCTAATTGACAATATCAGTCGGACAGCTCCCAATATCACTCATTTGCCACTCAAATTTGATCTTGCTGGAATGCTGCAACCAATACTCTATACACCTGCAAAAGATCCAGAAAATTCTCCCAGTCTTTGTAAGGAAGGGGTCCGTGCTGGCAAGATGTGCTCTAGAATTGAATCTAATTCTTCAAGAGTCATAACAGATACTGTCTGTCAGAACTGCAAAAAGGTGGCTTCGCTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

141

Amino Acids

15.75

Weight (kDa)

6.06

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 289
Acc36I ACCTGC 1 cut(s) 289
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 3 cut(s) 139, 239, 298
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 2 cut(s) 131, 178
AgsI TTSAA 4 cut(s) 146, 166, 356, 369
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw21I GWGCWC 1 cut(s) 347
AlwI GGATC 1 cut(s) 284
AlwNI CAGNNNCTG 1 cut(s) 386
ApeKI GCWGC 1 cut(s) 259
ApoI RAATTY 3 cut(s) 139, 239, 298
AspS9I GGNCC 2 cut(s) 27, 325
AvaII GGWCC 2 cut(s) 27, 325
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 246
BfaI CTAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 289
BisI GCNGC 1 cut(s) 260
BlsI GCNGC 1 cut(s) 261
Bme18I GGWCC 2 cut(s) 27, 325
BmgT120I GGNCC 2 cut(s) 27, 325
BmiI GGNNCC 2 cut(s) 72, 326
BmrI ACTGGG 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 347
BsmI GAATGC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 2 cut(s) 244, 289
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 72, 326
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 306
BssMI GATC 2 cut(s) 244, 289
BssNI GRCGYC 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 388
BstACI GRCGYC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 1 cut(s) 173
BstKTI GATC 2 cut(s) 247, 292
BstMBI GATC 2 cut(s) 244, 289
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 386
Cfr13I GGNCC 2 cut(s) 27, 325
CseI GACGC 1 cut(s) 104
Csp6I GTAC 2 cut(s) 130, 177
CviJI RGCY 5 cut(s) 5, 73, 158, 212, 413
CviKI_1 RGCY 5 cut(s) 5, 73, 158, 212, 413
CviQI GTAC 2 cut(s) 130, 177
DdeI CTNAG 1 cut(s) 173
DpnI GATC 2 cut(s) 246, 291
DpnII GATC 2 cut(s) 244, 289
Eco47I GGWCC 2 cut(s) 27, 325
FaiI YATR 5 cut(s) 34, 170, 276, 377, 424
Fnu4HI GCNGC 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 260
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 260
GsuI CTGGAG 1 cut(s) 144
HgaI GACGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 96
HinfI GANTC 2 cut(s) 356, 372
Hpy166II GTNNAC 2 cut(s) 105, 115
Hpy188I TCNGA 2 cut(s) 207, 396
Hpy188III TCNNGA 5 cut(s) 64, 163, 293, 348, 369
Hpy8I GTNNAC 2 cut(s) 105, 115
HpyAV CCTTC 2 cut(s) 61, 314
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 3 cut(s) 262, 284, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 244, 289
LmnI GCTCC 2 cut(s) 70, 217
LpnPI CCDG 9 cut(s) 72, 77, 87, 108, 237, 294, 306, 318, 319
Lsp1109I GCAGC 1 cut(s) 246
MaeI CTAG 1 cut(s) 348
MalI GATC 2 cut(s) 246, 291
MboI GATC 2 cut(s) 244, 289
MboII GAAGA 1 cut(s) 357
MfeI CAATTG 1 cut(s) 80
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 347
MluCI AATT 8 cut(s) 55, 80, 139, 189, 239, 298, 351, 361
MlyI GAGTC 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 1 cut(s) 40
MunI CAATTG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 342
NdeII GATC 2 cut(s) 244, 289
NlaIV GGNNCC 2 cut(s) 72, 326
PaqCI CACCTGC 1 cut(s) 289
PctI GAATGC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 1 cut(s) 261
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 72, 326
PspPI GGNCC 2 cut(s) 27, 325
PstNI CAGNNNCTG 1 cut(s) 386
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 2 cut(s) 131, 178
RsaNI GTAC 2 cut(s) 130, 177
SatI GCNGC 1 cut(s) 260
Sau3AI GATC 2 cut(s) 244, 289
Sau96I GGNCC 2 cut(s) 27, 325
SchI GAGTC 1 cut(s) 381
SduI GDGCHC 1 cut(s) 347
SetI ASST 5 cut(s) 32, 182, 214, 283, 411
SinI GGWCC 2 cut(s) 27, 325
Sse9I AATT 8 cut(s) 55, 80, 139, 189, 239, 298, 351, 361
SspMI CTAG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 388
TasI AATT 8 cut(s) 55, 80, 139, 189, 239, 298, 351, 361
TfiI GAWTC 1 cut(s) 356
TseI GCWGC 1 cut(s) 259
TspGWI ACGGA 1 cut(s) 317
VpaK11BI GGWCC 2 cut(s) 27, 325
XapI RAATTY 3 cut(s) 139, 239, 298
XbaI TCTAGA 1 cut(s) 347
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.