Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Reverse (-)

57156945 .. 57168517

Gene Structure 11573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0484700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAAAGAGCGAGAGCGATAACAGCATGGGCGAAAATTCGCAGGAGATTTACGAATCTGAAACTGTGTTATTCAAGAAGCAGGGTCTCTGCAAAGAAGAGAATCTGAACGAAGTTTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCGAATTGAACTGGGATGAGTGTAAGATGACTGTCACTGCAACAGAACGTACTGAAGGTGGTCTTCTTCAAGATGGCTTTGACAGGGGTTTTAATGCTCTCTCTGTTCTGGCATGTGGTCTCGGCACTGAATGGGTTGAACCAATCGTCTCCGGCAGTGTCTATAGTGATGTCATGTATATTAGAATACCATATGGCATGAGTCAGGATGATTTTTCAAGCAAGTATCAAGATTTCATATACAAATTTGAACACAAATTTGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCTTGAAGCATCTGTTGTCGTCCTTTCCGATAAAGCCGGGTCAACAAGTACAGTGAGGAATCTTGTGCTTAGTTGTCTAAATGACGATGATCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

198

Amino Acids

22.53

Weight (kDa)

4.38

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	542
AcsI	RAATTY	3 cut(s)	37, 407, 419
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	2 cut(s)	214, 508
AgsI	TTSAA	8 cut(s)	76, 146, 172, 233, 302, 381, 413, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	1 cut(s)	439
AluI	AGCT	1 cut(s)	439
Alw26I	GTCTC	3 cut(s)	92, 287, 316
AlwI	GGATC	1 cut(s)	542
AoxI	GGCC	1 cut(s)	154
ApoI	RAATTY	3 cut(s)	37, 407, 419
AsuC2I	CCSGG	1 cut(s)	496
BbsI	GAAGAC	2 cut(s)	218, 567
BccI	CCATC	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	496
BcoDI	GTCTC	3 cut(s)	92, 287, 316
BfmI	CTRYAG	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	496
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	2 cut(s)	218, 567
BpuMI	CCSGG	1 cut(s)	496
BsaI	GGTCTC	2 cut(s)	92, 287
Bse1I	ACTGG	1 cut(s)	179
BseGI	GGATG	2 cut(s)	184, 376
BseNI	ACTGG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	315, 495
BsmAI	GTCTC	3 cut(s)	92, 287, 316
BsmBI	CGTCTC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	2 cut(s)	92, 287
Bsp143I	GATC	2 cut(s)	547, 589
BspANI	GGCC	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	571
BspPI	GGATC	1 cut(s)	542
BspTNI	GGTCTC	2 cut(s)	92, 287
BsrI	ACTGG	1 cut(s)	179
BssMI	GATC	2 cut(s)	547, 589
Bst4CI	ACNGT	4 cut(s)	67, 139, 196, 511
Bst6I	CTCTTC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	527
BstF5I	GGATG	2 cut(s)	184, 376
BstKTI	GATC	2 cut(s)	550, 592
BstMAI	GTCTC	3 cut(s)	92, 287, 316
BstMBI	GATC	2 cut(s)	547, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 162
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	494
BstSFI	CTRYAG	1 cut(s)	325
BstV2I	GAAGAC	2 cut(s)	218, 567
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	184, 376
BtsI	GCAGTG	2 cut(s)	198, 325
BtsIMutI	CAGTG	4 cut(s)	198, 288, 325, 516
CciI	TCATGA	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	213, 507
CviAII	CATG	7 cut(s)	28, 152, 162, 276, 337, 361, 572
CviJI	RGCY	4 cut(s)	156, 240, 439, 494
CviKI_1	RGCY	4 cut(s)	156, 240, 439, 494
CviQI	GTAC	2 cut(s)	213, 507
DdeI	CTNAG	1 cut(s)	527
DpnI	GATC	2 cut(s)	549, 591
DpnII	GATC	2 cut(s)	547, 589
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco31I	GGTCTC	2 cut(s)	92, 287
Eco57I	CTGAAG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	7 cut(s)	31, 155, 165, 279, 340, 364, 575
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	7 cut(s)	27, 151, 161, 275, 336, 360, 571
FauNDI	CATATG	1 cut(s)	355
FokI	GGATG	2 cut(s)	191, 383
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	315, 495
Hin1II	CATG	7 cut(s)	31, 155, 165, 279, 340, 364, 575
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	5 cut(s)	56, 103, 146, 364, 517
HpaII	CCGG	2 cut(s)	315, 495
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	3 cut(s)	61, 108, 487
Hpy188III	TCNNGA	6 cut(s)	76, 233, 368, 392, 461, 572
Hpy8I	GTNNAC	1 cut(s)	501
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	4 cut(s)	67, 139, 196, 511
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	93, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 162
HpyF3I	CTNAG	1 cut(s)	527
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	7 cut(s)	31, 155, 165, 279, 340, 364, 575
Kzo9I	GATC	2 cut(s)	547, 589
LpnPI	CCDG	9 cut(s)	29, 68, 160, 232, 257, 328, 353, 457, 508
LweI	GCATC	1 cut(s)	476
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	549, 591
MboI	GATC	2 cut(s)	547, 589
MboII	GAAGA	5 cut(s)	110, 133, 218, 221, 572
MluCI	AATT	5 cut(s)	37, 167, 407, 419, 575
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	3 cut(s)	121, 441, 507
MseI	TTAA	2 cut(s)	255, 595
MslI	CAYNNNNRTG	1 cut(s)	570
MspI	CCGG	2 cut(s)	315, 495
MspR9I	CCNGG	1 cut(s)	496
MwoI	GCNNNNNNNGC	2 cut(s)	24, 162
NciI	CCSGG	1 cut(s)	496
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	2 cut(s)	547, 589
NlaIII	CATG	7 cut(s)	31, 155, 165, 279, 340, 364, 575
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	279
PagI	TCATGA	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PfeI	GAWTC	4 cut(s)	56, 103, 146, 517
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
RsaI	GTAC	2 cut(s)	214, 508
RsaNI	GTAC	2 cut(s)	213, 507
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	255, 595
Sau3AI	GATC	2 cut(s)	547, 589
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	496
SetI	ASST	5 cut(s)	132, 214, 223, 433, 441
SfaNI	GCATC	1 cut(s)	476
SfcI	CTRYAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	570
Sse9I	AATT	5 cut(s)	37, 167, 407, 419, 575
StyD4I	CCNGG	1 cut(s)	494
TaaI	ACNGT	4 cut(s)	67, 139, 196, 511
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	433
TasI	AATT	5 cut(s)	37, 167, 407, 419, 575
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	4 cut(s)	56, 103, 146, 517
Tru1I	TTAA	2 cut(s)	255, 595
Tru9I	TTAA	2 cut(s)	255, 595
TscAI	CASTG	4 cut(s)	205, 295, 325, 516
TseFI	GTSAC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	5 cut(s)	150, 388, 560, 573, 588
TspRI	CASTG	4 cut(s)	205, 295, 325, 516
XapI	RAATTY	3 cut(s)	37, 407, 419
XceI	RCATGY	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.