Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Reverse (-)

4616703 .. 4624373

Gene Structure 7671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28838

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGTTTTCCCATTGTCTTGGGAACTTAATCGAGAAGAACCAGCTGGCATGGCCTGGGTGGACCTCATTCTGGATGTTATGTTCTCGAATCTAGAGGTGCTCTTGTTTCCCGGGAAGGGCTTATACTTGGACATTGCCTCGTTTTTTCTATTCTGGTTGTGCAGTCAAATTACATTCAGTCTTCTTTTTTCTTTCGTGATTGCTTTCGTACCAGACACTCTGAGTGCAGCACCTGATAAAGCATCTGTCCTGTCCCGGGTAATGGCAGCCAGAAATGATCCAAATCTTGAGGGCTTTGTCATTACCATAAGGCCAGCTTGGGATTTACACTTGATGTTAATACAAGATGCTCTTACCGGAAGGGATTCTATTTCAAGTGGTTCATCGAGTGATTTGGGTTATCTACAGTTGTATAAAGTTCTTAAAACTGCAGCATTTGAGAATGATGAAGAGGATATGTGCAACGCCTATCTTCAAAAGTTGATCACCTATTCACCTGCTTCTTACTCACCCACTTGCCAGAGACAAGGTCAGTTGATATTTTTCATTCAGTATAAAGTCAATCTAGTTTGTATATTTTATGGTAAAAAAATTCATTCATCTCAGTTATTTCACAAGAAGAAAAAGAACAAAACAGGGGTTCTGTTGAATTTCAAATATTTAGTTTCACCTACCTGTGTATTTGGATTATTTTGTTCTACCCCCTCCTTTCCAAAATTTAGTTTTCTGTTTCAACTCCTTTCAGGTCAAAGAATCAAAGAATTAAAGGAGAGGGCTATGAGCGTGCTTAGTCCATACTGCCTGGTTGGGTCACATGAGCTTTCGCATGATAGTAACCAAACCGCACAAGCCTCTGAAAGTGGTCCTCTACCATTTGTCTCTCTTTTGGAGTTTAAGGAGCCAGAGCAATTGTCTGGCAATGACGCCTTGTGGACATTTGTGAACTTTGCTGGAGAGCTTCTAGTCAAGAAGGTGCTGCAACGGTTTTGGAGTTACTTCAGGGCAAAGTGTTTCGTTCTGTTGGGTGGAGCACCTTGTTTGATAGCTTGTCAATTTATAAAGAGAAGTTTTAAACAGTCCCTTGCTGGTGCCATATTACTGGAACTCCCAGAGGATGATGCTTATTTGAATCTCCTTCAAAAGGTTGTGGAAAATGGAAATCCCCTGGAACGAAATATTTGGAAGGATGTAGTTTTCCAGACACTGTTTGTGCTTAGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

407

Amino Acids

45.97

Weight (kDa)

6.93

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1058
AarI	CACCTGC	1 cut(s)	505
Acc36I	ACCTGC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	1088
AciI	CCGC	1 cut(s)	843
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	3 cut(s)	591, 649, 716
AcuI	CTGAAG	1 cut(s)	982
AcyI	GRCGYC	1 cut(s)	924
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	5 cut(s)	70, 116, 256, 262, 1141
AgsI	TTSAA	7 cut(s)	375, 476, 649, 655, 734, 1129, 1139
AjnI	CCWGG	3 cut(s)	53, 801, 1164
AloI	GAACNNNNNNTCC	2 cut(s)	65, 97
AluBI	AGCT	6 cut(s)	44, 317, 820, 958, 1046, 1218
AluI	AGCT	6 cut(s)	44, 317, 820, 958, 1046, 1218
Alw21I	GWGCWC	2 cut(s)	102, 1033
Alw26I	GTCTC	2 cut(s)	517, 883
AlwI	GGATC	1 cut(s)	272
AlwNI	CAGNNNCTG	2 cut(s)	233, 1204
Ama87I	CYCGRG	2 cut(s)	110, 255
AoxI	GGCC	2 cut(s)	51, 311
ApeKI	GCWGC	4 cut(s)	227, 266, 431, 976
ApoI	RAATTY	3 cut(s)	591, 649, 716
Asp700I	GAANNNNTTC	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	61, 863
AsuC2I	CCSGG	4 cut(s)	111, 112, 256, 257
AsuHPI	GGTGA	4 cut(s)	478, 486, 501, 660
AvaI	CYCGRG	2 cut(s)	110, 255
AvaII	GGWCC	2 cut(s)	61, 863
BanI	GGYRCC	1 cut(s)	1088
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	2 cut(s)	102, 1033
BbvI	GCAGC	4 cut(s)	239, 278, 443, 963
BciT130I	CCWGG	3 cut(s)	55, 803, 1166
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	4 cut(s)	111, 112, 256, 257
BcoDI	GTCTC	2 cut(s)	517, 883
BfaI	CTAG	3 cut(s)	92, 566, 962
BfmI	CTRYAG	2 cut(s)	404, 429
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	4 cut(s)	228, 267, 432, 977
BlpI	GCTNAGC	1 cut(s)	1214
BlsI	GCNGC	4 cut(s)	229, 268, 433, 978
Bme1390I	CCNGG	7 cut(s)	55, 111, 112, 256, 257, 803, 1166
Bme18I	GGWCC	2 cut(s)	61, 863
BmeT110I	CYCGRG	2 cut(s)	110, 255
BmgT120I	GGNCC	2 cut(s)	61, 863
BmiI	GGNNCC	2 cut(s)	900, 1090
BmrFI	CCNGG	7 cut(s)	55, 111, 112, 256, 257, 803, 1166
BmsI	GCATC	3 cut(s)	251, 337, 1108
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	972
Bpu1102I	GCTNAGC	1 cut(s)	1214
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	4 cut(s)	111, 112, 256, 257
BsaBI	GATNNNNATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	924
BsaJI	CCNNGG	4 cut(s)	54, 110, 255, 1164
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	1089, 1119
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 116, 256, 262, 1141
Bse1I	ACTGG	1 cut(s)	1104
Bse3DI	GCAATG	2 cut(s)	132, 925
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	3 cut(s)	55, 803, 1166
BseDI	CCNNGG	4 cut(s)	54, 110, 255, 1164
BseGI	GGATG	3 cut(s)	79, 1120, 1192
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	5 cut(s)	70, 116, 256, 262, 1141
BseMI	GCAATG	2 cut(s)	132, 925
BseMII	CTCAG	2 cut(s)	212, 617
BseNI	ACTGG	1 cut(s)	1104
BseXI	GCAGC	4 cut(s)	239, 278, 443, 963
BsgI	GTGCAG	2 cut(s)	181, 246
BshFI	GGCC	2 cut(s)	53, 313
BshNI	GGYRCC	1 cut(s)	1088
BsiHKAI	GWGCWC	2 cut(s)	102, 1033
BsiHKCI	CYCGRG	2 cut(s)	110, 255
BsiSI	CCGG	3 cut(s)	111, 256, 357
BslFI	GGGAC	2 cut(s)	238, 1063
BslI	CCNNNNNNNGG	5 cut(s)	70, 116, 256, 262, 1141
BsmAI	GTCTC	2 cut(s)	517, 883
BsmFI	GGGAC	2 cut(s)	238, 1063
BsnI	GGCC	2 cut(s)	53, 313
BsoBI	CYCGRG	2 cut(s)	110, 255
Bsp1286I	GDGCHC	2 cut(s)	102, 1033
Bsp143I	GATC	2 cut(s)	277, 483
Bsp1720I	GCTNAGC	1 cut(s)	1214
BspACI	CCGC	1 cut(s)	843
BspANI	GGCC	2 cut(s)	53, 313
BspCNI	CTCAG	2 cut(s)	213, 616
BspLI	GGNNCC	2 cut(s)	900, 1090
BspMAI	CTGCAG	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	1088
BsrDI	GCAATG	2 cut(s)	132, 925
BsrI	ACTGG	1 cut(s)	1104
BssECI	CCNNGG	4 cut(s)	54, 110, 255, 1164
BssMI	GATC	2 cut(s)	277, 483
BssNI	GRCGYC	1 cut(s)	924
Bst2UI	CCWGG	3 cut(s)	55, 803, 1166
Bst4CI	ACNGT	4 cut(s)	408, 984, 1077, 1206
Bst6I	CTCTTC	1 cut(s)	444
BstACI	GRCGYC	1 cut(s)	924
BstC8I	GCNNGC	3 cut(s)	46, 315, 785
BstDEI	CTNAG	4 cut(s)	221, 603, 788, 1214
BstENI	CCTNNNNNAGG	1 cut(s)	1139
BstF5I	GGATG	3 cut(s)	79, 1120, 1192
BstKTI	GATC	2 cut(s)	280, 486
BstMAI	GTCTC	2 cut(s)	517, 883
BstMBI	GATC	2 cut(s)	277, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	3 cut(s)	55, 803, 1166
BstSCI	CCNGG	7 cut(s)	53, 109, 110, 254, 255, 801, 1164
BstSFI	CTRYAG	2 cut(s)	404, 429
BstV1I	GCAGC	4 cut(s)	239, 278, 443, 963
BstV2I	GAAGAC	1 cut(s)	173
BstXI	CCANNNNNNTGG	2 cut(s)	18, 1099
BsuRI	GGCC	2 cut(s)	53, 313
BtsCI	GGATG	3 cut(s)	79, 1120, 1192
BtsIMutI	CAGTG	1 cut(s)	1202
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	3 cut(s)	46, 315, 785
CaiI	CAGNNNCTG	2 cut(s)	233, 1204
Cfr13I	GGNCC	2 cut(s)	61, 863
Cfr9I	CCCGGG	2 cut(s)	110, 255
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	3 cut(s)	49, 815, 827
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	4 cut(s)	221, 603, 788, 1214
DpnI	GATC	2 cut(s)	279, 485
DpnII	GATC	2 cut(s)	277, 483
DraI	TTTAAA	1 cut(s)	1072
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	61, 863
Eco57I	CTGAAG	1 cut(s)	982
Eco88I	CYCGRG	2 cut(s)	110, 255
EcoNI	CCTNNNNNAGG	1 cut(s)	1139
EcoRII	CCWGG	3 cut(s)	53, 801, 1164
FaeI	CATG	3 cut(s)	52, 818, 830
FalI	AAGNNNNNCTT	4 cut(s)	301, 333, 336, 368
FaqI	GGGAC	2 cut(s)	238, 1063
FatI	CATG	3 cut(s)	48, 814, 826
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	4 cut(s)	228, 267, 432, 977
FokI	GGATG	3 cut(s)	86, 1127, 1199
Fsp4HI	GCNGC	4 cut(s)	228, 267, 432, 977
FspBI	CTAG	3 cut(s)	92, 566, 962
GluI	GCNGC	4 cut(s)	228, 267, 432, 977
GsuI	CTGGAG	1 cut(s)	972
HaeIII	GGCC	2 cut(s)	53, 313
HapII	CCGG	3 cut(s)	111, 256, 357
HgaI	GACGC	1 cut(s)	932
Hin1I	GRCGYC	1 cut(s)	924
Hin1II	CATG	3 cut(s)	52, 818, 830
HinfI	GANTC	4 cut(s)	88, 365, 753, 1129
HpaII	CCGG	3 cut(s)	111, 256, 357
HphI	GGTGA	4 cut(s)	478, 486, 501, 660
Hpy166II	GTNNAC	3 cut(s)	61, 933, 943
Hpy188I	TCNGA	2 cut(s)	222, 856
Hpy188III	TCNNGA	8 cut(s)	32, 71, 85, 92, 196, 287, 967, 1198
Hpy8I	GTNNAC	3 cut(s)	61, 933, 943
HpyAV	CCTTC	5 cut(s)	109, 354, 964, 1145, 1177
HpyCH4III	ACNGT	4 cut(s)	408, 984, 1077, 1206
HpyCH4V	TGCA	5 cut(s)	162, 227, 431, 462, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	4 cut(s)	221, 603, 788, 1214
Hsp92I	GRCGYC	1 cut(s)	924
Hsp92II	CATG	3 cut(s)	52, 818, 830
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	277, 483
LmnI	GCTCC	2 cut(s)	898, 1028
Lsp1109I	GCAGC	4 cut(s)	239, 278, 443, 963
LweI	GCATC	3 cut(s)	251, 337, 1108
MaeI	CTAG	3 cut(s)	92, 566, 962
MaeIII	GTNAC	3 cut(s)	810, 833, 992
MalI	GATC	2 cut(s)	279, 485
MboI	GATC	2 cut(s)	277, 483
MboII	GAAGA	5 cut(s)	47, 173, 461, 464, 631
MfeI	CAATTG	1 cut(s)	908
MhlI	GDGCHC	2 cut(s)	102, 1033
MluCI	AATT	7 cut(s)	168, 591, 649, 716, 761, 908, 1052
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	6 cut(s)	27, 338, 423, 764, 894, 1071
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	3 cut(s)	111, 256, 357
MspR9I	CCNGG	7 cut(s)	55, 111, 112, 256, 257, 803, 1166
MunI	CAATTG	1 cut(s)	908
MvaI	CCWGG	3 cut(s)	55, 803, 1166
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	4 cut(s)	111, 112, 256, 257
NdeII	GATC	2 cut(s)	277, 483
NlaIII	CATG	3 cut(s)	52, 818, 830
NlaIV	GGNNCC	2 cut(s)	900, 1090
NmuCI	GTSAC	1 cut(s)	810
PaqCI	CACCTGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	4 cut(s)	88, 365, 753, 1129
PflFI	GACNNNGTC	1 cut(s)	528
PkrI	GCNGC	4 cut(s)	229, 268, 433, 978
PsiI	TTATAA	1 cut(s)	1058
Psp6I	CCWGG	3 cut(s)	53, 801, 1164
PspGI	CCWGG	3 cut(s)	53, 801, 1164
PspN4I	GGNNCC	2 cut(s)	900, 1090
PspPI	GGNCC	2 cut(s)	61, 863
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	2 cut(s)	233, 1204
PsyI	GACNNNGTC	1 cut(s)	528
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	6 cut(s)	27, 338, 423, 764, 894, 1071
SatI	GCNGC	4 cut(s)	228, 267, 432, 977
Sau3AI	GATC	2 cut(s)	277, 483
Sau96I	GGNCC	2 cut(s)	61, 863
ScrFI	CCNGG	7 cut(s)	55, 111, 112, 256, 257, 803, 1166
SduI	GDGCHC	2 cut(s)	102, 1033
SfaNI	GCATC	3 cut(s)	251, 337, 1108
SfcI	CTRYAG	2 cut(s)	404, 429
SinI	GGWCC	2 cut(s)	61, 863
SmaI	CCCGGG	2 cut(s)	112, 257
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	7 cut(s)	168, 591, 649, 716, 761, 908, 1052
SsiI	CCGC	1 cut(s)	843
SspI	AATATT	2 cut(s)	659, 1177
SspMI	CTAG	3 cut(s)	92, 566, 962
StyD4I	CCNGG	7 cut(s)	53, 109, 110, 254, 255, 801, 1164
TaaI	ACNGT	4 cut(s)	408, 984, 1077, 1206
TaqI	TCGA	3 cut(s)	31, 86, 386
TasI	AATT	7 cut(s)	168, 591, 649, 716, 761, 908, 1052
TfiI	GAWTC	4 cut(s)	88, 365, 753, 1129
Tru1I	TTAA	6 cut(s)	27, 338, 423, 764, 894, 1071
Tru9I	TTAA	6 cut(s)	27, 338, 423, 764, 894, 1071
TscAI	CASTG	1 cut(s)	1209
TseFI	GTSAC	1 cut(s)	810
TseI	GCWGC	4 cut(s)	227, 266, 431, 976
Tsp45I	GTSAC	1 cut(s)	810
TspDTI	ATGAA	5 cut(s)	372, 462, 535, 584, 588
TspMI	CCCGGG	2 cut(s)	110, 255
TspRI	CASTG	1 cut(s)	1209
Tth111I	GACNNNGTC	1 cut(s)	528
VpaK11BI	GGWCC	2 cut(s)	61, 863
XagI	CCTNNNNNAGG	1 cut(s)	1139
XapI	RAATTY	3 cut(s)	591, 649, 716
XbaI	TCTAGA	1 cut(s)	91
XmaI	CCCGGG	2 cut(s)	110, 255
XmnI	GAANNNNTTC	1 cut(s)	364
XspI	CTAG	3 cut(s)	92, 566, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.