Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Reverse (-)

4540256 .. 4542991

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG053400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGACTACACAAAAGTATTTATCAATTTTCAAAAAGGAATCTTCTTCTATCATTGATATGGAACTTAATCGAGAAGAACCAGCTGGCATGGCCTGGGTGGGCCTCATTCTGGATGTTATGTTCTCGATTCTAGAGGTGCTCTTGTTTCCCGGGAAGGGCTTATACTTGGACATTGCCTCGTTTTTTCTATTCTGGTTGTGCAGACAAATTACATTCAGTCTTCTTTTTTCTTTCATGATCGCTTTCGTACCAGACACTCTGAGTGCAGCACCTGATAAAGCATCTGTCCTGTCCCGGGTAATGGCAGCCGGAAATGATCCAAATCTTGAGGGCTTTGTCATTACCATAAGGCCGGCTTGGGATGTACACTTGATGTTAATACAAGATGCTCTTACCGGAAGGGATTCTATTTCAAGTGGTTCATCGAGTGATTTGGGTTATCTACAGTCGTGCTTGGAAAATGATGAAGAGGATATGTGCAACGCCTATCTTCAAAAGTTGATCACCTATTCACCTGCTTCTTACTCACCCACTTGCCAGAGACAAGGTCAAAGAATCAAAGAATTAAAGGAGAGGGCTATGAGCGTGCTTAGTCCATACTGCCTGGTTGGGTCACATGAGCTTTCGCATGATAGTAACCAAACTGCACAAGCCTCTGAAAGTGGTCCTCTAAAGTTTGTGAGTGGAATTTATCGGGAGGAGCCAGAGCAATTGTCTGGCAATGACGCCTTGTGGACATTTGTGAACTTTGCTGGAGAGTACGATACAAATTTTCAAACTCTTGTGGCTCTCTTGAATATGCTGAGTACCTTGGCTTCTAGTCAAGAAGGTGCTGCAACGGTTTTGGAGTTACTTCAGGGCAAAGTGTTTCGTTCTGTTGGGTGGAGCACCTTGTTTGATAGCTTGTCAATTTATAAAGAGAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

309

Amino Acids

34.36

Weight (kDa)

4.64

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
AarI	CACCTGC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	523
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	2 cut(s)	687, 769
AcuI	CTGAAG	1 cut(s)	839
AcyI	GRCGYC	1 cut(s)	726
AfaI	GTAC	4 cut(s)	249, 366, 761, 808
AfiI	CCNNNNNNNGG	4 cut(s)	109, 155, 295, 301
AgsI	TTSAA	5 cut(s)	31, 414, 494, 776, 796
AjnI	CCWGG	2 cut(s)	92, 603
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	83, 622, 903
AluI	AGCT	3 cut(s)	83, 622, 903
Alw21I	GWGCWC	2 cut(s)	141, 890
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	2 cut(s)	149, 294
AoxI	GGCC	3 cut(s)	90, 100, 350
ApeKI	GCWGC	3 cut(s)	266, 305, 833
ApoI	RAATTY	2 cut(s)	687, 769
Asp700I	GAANNNNTTC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	100, 665
AsuC2I	CCSGG	4 cut(s)	150, 151, 295, 296
AsuHPI	GGTGA	3 cut(s)	496, 504, 519
AvaI	CYCGRG	2 cut(s)	149, 294
AvaII	GGWCC	1 cut(s)	665
BarI	GAAGNNNNNNTAC	4 cut(s)	146, 178, 799, 831
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	2 cut(s)	141, 890
BbvI	GCAGC	3 cut(s)	278, 317, 820
BciT130I	CCWGG	2 cut(s)	94, 605
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	4 cut(s)	150, 151, 295, 296
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	2 cut(s)	131, 819
BfmI	CTRYAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	523
BisI	GCNGC	3 cut(s)	267, 306, 834
BlsI	GCNGC	3 cut(s)	268, 307, 835
Bme1390I	CCNGG	6 cut(s)	94, 150, 151, 295, 296, 605
Bme18I	GGWCC	1 cut(s)	665
BmeT110I	CYCGRG	2 cut(s)	149, 294
BmgT120I	GGNCC	2 cut(s)	100, 665
BmiI	GGNNCC	1 cut(s)	702
BmrFI	CCNGG	6 cut(s)	94, 150, 151, 295, 296, 605
BmsI	GCATC	2 cut(s)	290, 376
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	4 cut(s)	150, 151, 295, 296
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	726
BsaJI	CCNNGG	4 cut(s)	93, 149, 294, 810
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 155, 295, 301
Bse118I	RCCGGY	1 cut(s)	352
Bse3DI	GCAATG	2 cut(s)	171, 727
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	94, 605
BseDI	CCNNGG	4 cut(s)	93, 149, 294, 810
BseGI	GGATG	2 cut(s)	118, 367
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	4 cut(s)	109, 155, 295, 301
BseMI	GCAATG	2 cut(s)	171, 727
BseMII	CTCAG	2 cut(s)	251, 794
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	3 cut(s)	278, 317, 820
BsgI	GTGCAG	3 cut(s)	220, 285, 630
BshFI	GGCC	3 cut(s)	92, 102, 352
BsiHKAI	GWGCWC	2 cut(s)	141, 890
BsiHKCI	CYCGRG	2 cut(s)	149, 294
BsiSI	CCGG	5 cut(s)	150, 295, 309, 353, 396
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	4 cut(s)	109, 155, 295, 301
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	92, 102, 352
BsoBI	CYCGRG	2 cut(s)	149, 294
Bsp1286I	GDGCHC	2 cut(s)	141, 890
Bsp1407I	TGTACA	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	237, 316, 501
BspANI	GGCC	3 cut(s)	92, 102, 352
BspCNI	CTCAG	2 cut(s)	252, 795
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	702
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	311
BsrDI	GCAATG	2 cut(s)	171, 727
BsrFI	RCCGGY	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	4 cut(s)	93, 149, 294, 810
BssMI	GATC	3 cut(s)	237, 316, 501
BssNI	GRCGYC	1 cut(s)	726
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	2 cut(s)	94, 605
Bst4CI	ACNGT	2 cut(s)	447, 841
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	726
BstAUI	TGTACA	1 cut(s)	364
BstC8I	GCNNGC	3 cut(s)	85, 354, 587
BstDEI	CTNAG	3 cut(s)	260, 590, 803
BstF5I	GGATG	2 cut(s)	118, 367
BstKTI	GATC	3 cut(s)	240, 319, 504
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	3 cut(s)	237, 316, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	2 cut(s)	94, 605
BstSCI	CCNGG	6 cut(s)	92, 148, 149, 293, 294, 603
BstSFI	CTRYAG	1 cut(s)	443
BstV1I	GCAGC	3 cut(s)	278, 317, 820
BstV2I	GAAGAC	1 cut(s)	212
BsuRI	GGCC	3 cut(s)	92, 102, 352
BtsCI	GGATG	2 cut(s)	118, 367
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	3 cut(s)	85, 354, 587
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	100, 665
Cfr9I	CCCGGG	2 cut(s)	149, 294
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	4 cut(s)	248, 365, 760, 807
CviAII	CATG	4 cut(s)	88, 235, 617, 629
CviQI	GTAC	4 cut(s)	248, 365, 760, 807
DdeI	CTNAG	3 cut(s)	260, 590, 803
DpnI	GATC	3 cut(s)	239, 318, 503
DpnII	GATC	3 cut(s)	237, 316, 501
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	810
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	839
Eco88I	CYCGRG	2 cut(s)	149, 294
EcoRII	CCWGG	2 cut(s)	92, 603
EcoT14I	CCWWGG	1 cut(s)	810
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	4 cut(s)	91, 238, 620, 632
FalI	AAGNNNNNCTT	4 cut(s)	340, 372, 375, 407
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	4 cut(s)	87, 234, 616, 628
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	3 cut(s)	267, 306, 834
FokI	GGATG	2 cut(s)	125, 374
Fsp4HI	GCNGC	3 cut(s)	267, 306, 834
FspBI	CTAG	2 cut(s)	131, 819
GluI	GCNGC	3 cut(s)	267, 306, 834
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	3 cut(s)	92, 102, 352
HapII	CCGG	5 cut(s)	150, 295, 309, 353, 396
HgaI	GACGC	1 cut(s)	734
Hin1I	GRCGYC	1 cut(s)	726
Hin1II	CATG	4 cut(s)	91, 238, 620, 632
HinfI	GANTC	4 cut(s)	38, 127, 404, 555
HpaII	CCGG	5 cut(s)	150, 295, 309, 353, 396
HphI	GGTGA	3 cut(s)	496, 504, 519
Hpy166II	GTNNAC	3 cut(s)	367, 735, 745
Hpy188I	TCNGA	2 cut(s)	261, 658
Hpy188III	TCNNGA	9 cut(s)	71, 110, 124, 131, 235, 326, 695, 793, 824
Hpy8I	GTNNAC	3 cut(s)	367, 735, 745
HpyAV	CCTTC	3 cut(s)	148, 393, 821
HpyCH4III	ACNGT	2 cut(s)	447, 841
HpyCH4V	TGCA	5 cut(s)	201, 266, 480, 647, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	3 cut(s)	260, 590, 803
Hsp92I	GRCGYC	1 cut(s)	726
Hsp92II	CATG	4 cut(s)	91, 238, 620, 632
KroI	GCCGGC	1 cut(s)	352
KroNI	GCCGGC	1 cut(s)	354
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	237, 316, 501
LmnI	GCTCC	2 cut(s)	700, 885
Lsp1109I	GCAGC	3 cut(s)	278, 317, 820
LweI	GCATC	2 cut(s)	290, 376
MaeI	CTAG	2 cut(s)	131, 819
MaeIII	GTNAC	3 cut(s)	612, 635, 849
MalI	GATC	3 cut(s)	239, 318, 503
MboI	GATC	3 cut(s)	237, 316, 501
MboII	GAAGA	6 cut(s)	33, 36, 86, 212, 479, 482
MfeI	CAATTG	1 cut(s)	710
MhlI	GDGCHC	2 cut(s)	141, 890
MluCI	AATT	7 cut(s)	24, 207, 563, 687, 710, 769, 909
MnlI	CCTC	9 cut(s)	113, 127, 187, 322, 463, 567, 664, 678, 691
MroNI	GCCGGC	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	4 cut(s)	66, 377, 566, 928
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	5 cut(s)	150, 295, 309, 353, 396
MspR9I	CCNGG	6 cut(s)	94, 150, 151, 295, 296, 605
MunI	CAATTG	1 cut(s)	710
MvaI	CCWGG	2 cut(s)	94, 605
MwoI	GCNNNNNNNGC	1 cut(s)	89
NaeI	GCCGGC	1 cut(s)	354
NciI	CCSGG	4 cut(s)	150, 151, 295, 296
NdeII	GATC	3 cut(s)	237, 316, 501
NgoMIV	GCCGGC	1 cut(s)	352
NlaIII	CATG	4 cut(s)	91, 238, 620, 632
NlaIV	GGNNCC	1 cut(s)	702
NmuCI	GTSAC	1 cut(s)	612
PagI	TCATGA	1 cut(s)	234
PaqCI	CACCTGC	1 cut(s)	523
PdiI	GCCGGC	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	4 cut(s)	38, 127, 404, 555
PflFI	GACNNNGTC	1 cut(s)	546
PkrI	GCNGC	3 cut(s)	268, 307, 835
PsiI	TTATAA	1 cut(s)	915
Psp6I	CCWGG	2 cut(s)	92, 603
PspGI	CCWGG	2 cut(s)	92, 603
PspN4I	GGNNCC	1 cut(s)	702
PspPI	GGNCC	2 cut(s)	100, 665
PstNI	CAGNNNCTG	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	546
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	4 cut(s)	249, 366, 761, 808
RsaNI	GTAC	4 cut(s)	248, 365, 760, 807
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	4 cut(s)	66, 377, 566, 928
SatI	GCNGC	3 cut(s)	267, 306, 834
Sau3AI	GATC	3 cut(s)	237, 316, 501
Sau96I	GGNCC	2 cut(s)	100, 665
ScrFI	CCNGG	6 cut(s)	94, 150, 151, 295, 296, 605
SduI	GDGCHC	2 cut(s)	141, 890
SfaNI	GCATC	2 cut(s)	290, 376
SfcI	CTRYAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	665
SmaI	CCCGGG	2 cut(s)	151, 296
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	7 cut(s)	24, 207, 563, 687, 710, 769, 909
SspMI	CTAG	2 cut(s)	131, 819
StyD4I	CCNGG	6 cut(s)	92, 148, 149, 293, 294, 603
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	2 cut(s)	447, 841
TaqI	TCGA	3 cut(s)	70, 125, 425
TasI	AATT	7 cut(s)	24, 207, 563, 687, 710, 769, 909
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	4 cut(s)	38, 127, 404, 555
Tru1I	TTAA	4 cut(s)	66, 377, 566, 928
Tru9I	TTAA	4 cut(s)	66, 377, 566, 928
TseFI	GTSAC	1 cut(s)	612
TseI	GCWGC	3 cut(s)	266, 305, 833
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	3 cut(s)	223, 411, 480
TspMI	CCCGGG	2 cut(s)	149, 294
Tth111I	GACNNNGTC	1 cut(s)	546
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	2 cut(s)	687, 769
XbaI	TCTAGA	1 cut(s)	130
XmaI	CCCGGG	2 cut(s)	149, 294
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	2 cut(s)	131, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.