Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001803

Physical Location & Seq

Genomic Coordinates Reverse (-)

5171411 .. 5174333

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCAGCCGGAAATGATCCAAATCTTGAGGGCTTTGTCATTACCATAAGGCCGGCTTGGGATGTACACTTGATGTTAATAGAAGATGCTCTTACTGGAAGGGATTCTATTTCAAGTGGTTCATCGAGTGATTTGGGTTATCTACAGTTGTGCTTGGAAAATGATGAAGAGGATATAAGCTATATGTACGACGCCAATCTTCAGAAGTTGATCACCTATTCACCTGCTTCTTACTCACCCACTTGCCATAGACAAGGTAAGTTTGAACTAAAAATTAAATACCTGAGGGCTGAGGAACTGTCTAGTTTTAAGGAGCCAGAGCAGTTGTCTGGCAATGACGTCTTGTGGACATTTGTGAACTTTGCTGGAGAGGACGATACAAATTTTCAAACTCTTGTGGCTCTCTTGAATATGCTGAGTACCTTGGTGCTTCTAGTCAAGAAGGTGCTGCAATGGTTTTGGAGTTACTTCAGGGCAAAGTGTTTCGTTCTGTTGGGTGGAGCACCTTGTTTGATAGCTTGTCAATTTATAAAGAGAAGTTTTAAACAGTCCCTTGCTGGTGCCATGTTACTGGAACTCCCAGAGGATGATGCTTATTTGAATCTCCTTCAAAACGTTGTGGAAAATGGAAATCCCCTGGAACGAAATATTTGGAAGGATATAGTTTTCCGAATACCGTTTGAAGGGGTCCGTGCTGGCAAGATGTGCTCTAGAATTGAATCTAATTCTTCAAGAGTCATAACAGATACTGTCTGTCAGAACTGCAAAAAGAGTAGAGCTCAGGAATTTTGTGAGGCAAAGATTAAAGCAATATCAGTCTTGCCTGAGGAGCTTGAAGACAGAAGTAGTCATCCCTTCCTAGAGTCATCTTCGGCATTACTTAATATTGGTATACTAGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup192

Protein Analysis

302

Amino Acids

33.9

Weight (kDa)

4.9

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51200 AT5G51200 AT5G51200
fragaria_vesca	FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320 FvH4_1g03320
malus_domestica	MD02G1032900.v1.1
prunus_persica	Prupe.7G242500_v2.0.a1
pyrus_communis	pycom02g02700
rosa_chinensis	RchiOBHm_Chr2g0088511 RchiOBHm_Chr5g0006961 RchiOBHm_Chr5g0007071 RchiOBHm_Chr5g0007211 RchiOBHm_Chr5g0007281 RchiOBHm_Chr5g0007291 RchiOBHm_Chr5g0007331
rosa_laevigata	RLG00000015961 RLG00000031440 RLG00000031448 RLG00000031451
rosa_multiflora	Rmu_sc0002566.1_g000004 Rmu_sc0004733.1_g000009 Rmu_sc0026502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152620
rosa_rugosa	Rorug01G0484700 Rorug01G0484800 Rorug01G0484900 Rorug04G0425700
rosa_samantha	Rh2AG039700 Rh2BG038600 Rh2CG039800 Rh2DG039100 Rh5AG053000 Rh5AG053400 Rh5AG054100 Rh5AG054500 Rh5CG060600 Rh5CG061000
rosa_wichuraiana	Rw2G003100 Rw5G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AarI	CACCTGC	1 cut(s)	232
AatII	GACGTC	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	892
AclI	AACGTT	1 cut(s)	615
AclWI	GGATC	1 cut(s)	11
AcsI	RAATTY	2 cut(s)	382, 785
AcuI	CTGAAG	2 cut(s)	185, 454
AcyI	GRCGYC	2 cut(s)	192, 339
AfaI	GTAC	3 cut(s)	66, 188, 421
AfiI	CCNNNNNNNGG	1 cut(s)	683
AjnI	CCWGG	1 cut(s)	636
AluBI	AGCT	5 cut(s)	180, 518, 779, 832, 901
AluI	AGCT	5 cut(s)	180, 518, 779, 832, 901
Alw21I	GWGCWC	4 cut(s)	505, 710, 781, 903
AlwI	GGATC	1 cut(s)	11
AlwNI	CAGNNNCTG	1 cut(s)	749
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	2 cut(s)	5, 448
ApoI	RAATTY	2 cut(s)	382, 785
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	3 cut(s)	205, 213, 228
AvaII	GGWCC	1 cut(s)	688
AxyI	CCTNAGG	2 cut(s)	284, 825
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	2 cut(s)	781, 903
BbsI	GAAGAC	1 cut(s)	843
Bbv12I	GWGCWC	4 cut(s)	505, 710, 781, 903
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	17, 435
BciT130I	CCWGG	1 cut(s)	638
BclI	TGATCA	1 cut(s)	210
BfaI	CTAG	6 cut(s)	303, 434, 711, 860, 896, 904
BfmI	CTRYAG	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	6, 449
BlsI	GCNGC	2 cut(s)	7, 450
Bme1390I	CCNGG	1 cut(s)	638
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	3 cut(s)	315, 562, 689
BmrFI	CCNGG	1 cut(s)	638
BmsI	GCATC	2 cut(s)	76, 580
BpiI	GAAGAC	1 cut(s)	843
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	2 cut(s)	291, 780
BpuEI	CTTGAG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	21
BsaHI	GRCGYC	2 cut(s)	192, 339
BsaJI	CCNNGG	2 cut(s)	423, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	100, 576
Bse21I	CCTNAGG	2 cut(s)	284, 825
Bse3DI	GCAATG	2 cut(s)	340, 458
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	2 cut(s)	423, 636
BseGI	GGATG	3 cut(s)	67, 592, 850
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMI	GCAATG	2 cut(s)	340, 458
BseMII	CTCAG	5 cut(s)	275, 282, 407, 794, 816
BseNI	ACTGG	2 cut(s)	100, 576
BseRI	GAGGAG	1 cut(s)	842
BseXI	GCAGC	2 cut(s)	17, 435
BshFI	GGCC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	560
BsiHKAI	GWGCWC	4 cut(s)	505, 710, 781, 903
BsiSI	CCGG	2 cut(s)	9, 53
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	52
Bsp1286I	GDGCHC	4 cut(s)	505, 710, 781, 903
Bsp1407I	TGTACA	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	16, 210
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	5 cut(s)	276, 283, 408, 793, 817
BspLI	GGNNCC	3 cut(s)	315, 562, 689
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	560
BsrDI	GCAATG	2 cut(s)	340, 458
BsrFI	RCCGGY	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	100, 576
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	423, 636
BssMI	GATC	2 cut(s)	16, 210
BssNAI	GTATAC	1 cut(s)	893
BssNI	GRCGYC	2 cut(s)	192, 339
BssT1I	CCWWGG	1 cut(s)	423
Bst1107I	GTATAC	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	5 cut(s)	147, 300, 549, 678, 751
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	2 cut(s)	192, 339
BstAPI	GCANNNNNTGC	1 cut(s)	705
BstAUI	TGTACA	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	54, 697
BstDEI	CTNAG	5 cut(s)	284, 291, 416, 780, 825
BstF5I	GGATG	3 cut(s)	67, 592, 850
BstKTI	GATC	2 cut(s)	19, 213
BstMBI	GATC	2 cut(s)	16, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	705, 829
BstNI	CCWGG	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	636
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	17, 435
BstV2I	GAAGAC	1 cut(s)	843
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstZ17I	GTATAC	1 cut(s)	893
Bsu36I	CCTNAGG	2 cut(s)	284, 825
BsuRI	GGCC	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	67, 592, 850
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	54, 697
CaiI	CAGNNNCTG	1 cut(s)	749
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	688
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	3 cut(s)	65, 187, 420
CviAII	CATG	1 cut(s)	565
CviQI	GTAC	3 cut(s)	65, 187, 420
DdeI	CTNAG	5 cut(s)	284, 291, 416, 780, 825
DpnI	GATC	2 cut(s)	18, 212
DpnII	GATC	2 cut(s)	16, 210
DraI	TTTAAA	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Ecl136II	GAGCTC	2 cut(s)	779, 901
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	2 cut(s)	781, 903
Eco47I	GGWCC	1 cut(s)	688
Eco53kI	GAGCTC	2 cut(s)	779, 901
Eco57I	CTGAAG	2 cut(s)	185, 454
Eco81I	CCTNAGG	2 cut(s)	284, 825
EcoICRI	GAGCTC	2 cut(s)	779, 901
EcoRII	CCWGG	1 cut(s)	636
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	2 cut(s)	781, 903
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	1 cut(s)	568
FalI	AAGNNNNNCTT	4 cut(s)	40, 72, 75, 107
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	1 cut(s)	564
FbaI	TGATCA	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	892
Fnu4HI	GCNGC	2 cut(s)	6, 449
FokI	GGATG	3 cut(s)	74, 599, 837
FriOI	GRGCYC	2 cut(s)	781, 903
Fsp4HI	GCNGC	2 cut(s)	6, 449
FspBI	CTAG	6 cut(s)	303, 434, 711, 860, 896, 904
GluI	GCNGC	2 cut(s)	6, 449
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	2 cut(s)	9, 53
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	2 cut(s)	192, 339
Hin1II	CATG	1 cut(s)	568
HinfI	GANTC	5 cut(s)	104, 601, 719, 735, 863
HpaII	CCGG	2 cut(s)	9, 53
HphI	GGTGA	3 cut(s)	205, 213, 228
Hpy166II	GTNNAC	4 cut(s)	67, 348, 358, 893
Hpy188I	TCNGA	3 cut(s)	204, 671, 759
Hpy188III	TCNNGA	6 cut(s)	26, 406, 439, 711, 732, 782
Hpy8I	GTNNAC	4 cut(s)	67, 348, 358, 893
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	6 cut(s)	93, 436, 617, 649, 677, 865
HpyCH4III	ACNGT	5 cut(s)	147, 300, 549, 678, 751
HpyCH4IV	ACGT	2 cut(s)	339, 615
HpyCH4V	TGCA	2 cut(s)	451, 765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	705, 829
HpyF3I	CTNAG	5 cut(s)	284, 291, 416, 780, 825
HpySE526I	ACGT	2 cut(s)	339, 615
Hsp92I	GRCGYC	2 cut(s)	192, 339
Hsp92II	CATG	1 cut(s)	568
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	16, 210
LmnI	GCTCC	3 cut(s)	313, 500, 829
Lsp1109I	GCAGC	2 cut(s)	17, 435
LweI	GCATC	2 cut(s)	76, 580
MaeI	CTAG	6 cut(s)	303, 434, 711, 860, 896, 904
MaeII	ACGT	2 cut(s)	339, 615
MaeIII	GTNAC	2 cut(s)	464, 567
MalI	GATC	2 cut(s)	18, 212
MboI	GATC	2 cut(s)	16, 210
MboII	GAAGA	6 cut(s)	95, 179, 191, 720, 848, 861
MhlI	GDGCHC	4 cut(s)	505, 710, 781, 903
MluCI	AATT	6 cut(s)	273, 382, 524, 714, 724, 785
MlyI	GAGTC	2 cut(s)	744, 872
MnlI	CCTC	8 cut(s)	22, 163, 279, 286, 364, 577, 787, 820
MroNI	GCCGGC	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	6 cut(s)	77, 276, 309, 543, 804, 882
MspI	CCGG	2 cut(s)	9, 53
MspR9I	CCNGG	1 cut(s)	638
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	2 cut(s)	705, 829
NaeI	GCCGGC	1 cut(s)	54
NdeII	GATC	2 cut(s)	16, 210
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	568
NlaIV	GGNNCC	3 cut(s)	315, 562, 689
PaqCI	CACCTGC	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	104, 601, 719
PkrI	GCNGC	2 cut(s)	7, 450
PleI	GAGTC	2 cut(s)	743, 871
PpsI	GAGTC	2 cut(s)	743, 871
PsiI	TTATAA	1 cut(s)	530
Psp124BI	GAGCTC	2 cut(s)	781, 903
Psp1406I	AACGTT	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	3 cut(s)	315, 562, 689
PspPI	GGNCC	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	749
RsaI	GTAC	3 cut(s)	66, 188, 421
RsaNI	GTAC	3 cut(s)	65, 187, 420
SacI	GAGCTC	2 cut(s)	781, 903
SaqAI	TTAA	6 cut(s)	77, 276, 309, 543, 804, 882
SatI	GCNGC	2 cut(s)	6, 449
Sau3AI	GATC	2 cut(s)	16, 210
Sau96I	GGNCC	1 cut(s)	688
SchI	GAGTC	2 cut(s)	744, 872
ScrFI	CCNGG	1 cut(s)	638
SduI	GDGCHC	4 cut(s)	505, 710, 781, 903
SfaNI	GCATC	2 cut(s)	76, 580
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	688
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	6 cut(s)	273, 382, 524, 714, 724, 785
SspI	AATATT	2 cut(s)	649, 886
SspMI	CTAG	6 cut(s)	303, 434, 711, 860, 896, 904
SstI	GAGCTC	2 cut(s)	781, 903
StyD4I	CCNGG	1 cut(s)	636
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	5 cut(s)	147, 300, 549, 678, 751
TaiI	ACGT	2 cut(s)	342, 618
TaqI	TCGA	1 cut(s)	125
TasI	AATT	6 cut(s)	273, 382, 524, 714, 724, 785
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	3 cut(s)	104, 601, 719
Tru1I	TTAA	6 cut(s)	77, 276, 309, 543, 804, 882
Tru9I	TTAA	6 cut(s)	77, 276, 309, 543, 804, 882
TseI	GCWGC	2 cut(s)	5, 448
TspDTI	ATGAA	2 cut(s)	111, 180
TspGWI	ACGGA	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	2 cut(s)	382, 785
XbaI	TCTAGA	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	892
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	6 cut(s)	303, 434, 711, 860, 896, 904
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.