Rh2DG039100

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001803
Physical Location & Seq
Reverse (-)
2727616 .. 2744655
17040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG039100.1

Sequence Viewer

Length: 5655 bp
ATGACGCCGAAGCAGCTCCTCGCGGTAATCGAATCGGCGCTACTAGGCCCGCTGCCTCCGAGCCCATCTCAGAGAGTGGAGCTCATGCACGCTATTCGAAGCTCTCTCCCGTCGCTCCAGTCCCTCCTCTCATATCCGCCTCCGAAGCCGTCGGACCGAGCTCAAGTTCAGTCCAAAGAAGTTAGGCTTCCGAATGGGCCACCGATTTTGCTTGATGACCAGGACGTCCAGATTGCTTTGAAGTTAAGTGATGACCTGCATCTCAACGAGATTGATTGTGTCCGTTTGATTGTCTCTGCAAATCAAGAGTGGGGCTTAATGGGAAGAGAGCCACTAGAAATTTTGCGCCTTGCAACAGGGCTCTGGTACACTGAGAGAAGAGATCTATTAACAGCTGTCTATACACTTTTAAGGGCTGTTGTGCTTGATCAGGGACTTGAAGCTGAAGTTGTATCTGACATTCAAAAATATCTGGAAAATCTTATCAATAATGGGCTTAGACAGAGGTTAATATCTCTTATAAAGGAACTTAATCGAGAAGAACCAGCTGGCTTGGGCGGGCCTCATTCTGAACGTTATGTTCTCGATTCTAGAGGAGCTCTTGTTGTACGACAAGCTGTGGTTTCCCGGGAAAGGCTCATACTTGGACACTGCCTCGTTCTTTCTATTCTGGTTGTGCGGACAAGTCCAAAGGATGTAAAGGATATATTTCTCGTGTATAAAGATAGTGCTTCTGAAGTTAGTGGGACTAATGACACTATAAAACGCCAGATTACATTCAGTCTTCTTTTTTCTCTTGTGATCGCTTTCGTATCAGACGCTCTGAGTGCAGCACCTGATAAAGCATCTGTCCTGTCCCGGGATGCATCTTTTAGACATGAATTTCATGAAATCGTAATGGCAGCCGGAAATGATCCAAATGTTGAGGGCTTTGTCGGTACCATAAGGCTTGCTTGGGCTGTACACTTGATGTTAATACAAGATGCTCTTCCCGGAAGGGATGCTATTTCAAGTGCTTCATCGAGTGATTTGGGTTATCTCCAGTTGTGCTTAGAAGTGGTTTTTTCAAAGAACGTTTTCCAGTTTATATTAGATGAAGTTCTTAAAACTGCAGCTTATGAGAATGATGACGAGGATATAAGCTATATGTACAATGCTTATCTTCACAAGTTGATCACCTGCTTCTTATCTCACCCACTTGCCAGAGACAAGGTCAAAGAATCAAAGGAGAGGGCAATGAGCATGCTTAGTCCATACCGCCTGGTTGGATCACATGATTTTTTGCATGATAGTAACCAAACTTCACAAGCCTCTGAAAATGGTTCACTACCATTCGTCTCTCTTTTGGAGTTTGTGAGTGGAATTTATCAGAAGGAACCAGAGCTGTTGTCTGGCAATGATGTCTTGTGGACCTTTGTGAACTTTGCTGGAGAGGACCATACAAATTTTCAAACCCTTGTGGCATTCTTGAATATGCTGAGTACCTTGGCTTCTAGTCAAGAAGGTGCTGCAAAGGTTTTTGAGTTACTTCAGGGAAAAGTGTTTCGTTCTGTTGGTTGGAGCACTTTGTTTGATAGCTTATCAATTTATGACGAGAAGTTTAAACAGTCCCTTCAAACTGCTGGTGCCATGTTACCGGAACTCCCAGAGGGTGATGCAAAAGCACTCGTTGCTTATTTAAATGTCCTTCAAAAGGTTGTGGAAAATGGAAATCCCCTTGAACGAAAGAACTGGTTTCCTGATATTGAGCCTTTGTTTAAGCTTCTTGGTTATGAAAATGTGCCTCCTTATCTAAAGGGTGCCTTGCGTAATGCAATAACAACTTTTGTATATGTCTCTCCTGTCCTAAAAGATACAGTCTGGAGTTATCTTGAGCAGTATGATCTCCCCGTGGTTGTTGGATCTCATGTTGGGAAGAGTGCACAGCCCATGGCTGCACAGGTGTATGATATGCAATTTGAGCTCAATGAAATAGAAGCAAGGAGAGAGCAATATCCTTCAACAATATCCTTCCTTAACCTGTTAAATGCTCTTATATCTGAAGAAAGAGACTTAAGTGATAGAGGGCGCAGATTCATTGGAATTTTCAGGTTCATTTATGATCATGTTTTTAGGCCATTCCCTCAAAGAGCCTATGCCGATCCTTGTGAGAAATGGCAATTAGTTGTTGCATGTCTTCAGCACTTTCATATGATGTTGAGTCTGTATGACATCAGTGAAGAGGATATTGATGGTGTCATTGATCAATCTCAGCTTTCAACAGTAACACAATCTTCACTCCAGATGCAGCTACCAATTCTAGAATTGCTAAAAGACTTTATGAGTGGAAAATCTGTTTTCCGGAACATCATGGGCATCCTTCTGCCAGGTGTCAATACCATTATAACTGAACGAACAAATCAAGTGTACGGGAAACTCTTAGAGAAGGCTGTGCAACTCTCATTGGAGATTATAATCCTTGTCTTGGAGAAGGATTTGCTTCTTTCTGATTTCTGGCGTCCTCTTTACCAGCCTCTGGATGTTATACTCTCTCAAGATCATAATCAAATTGTAGCTTTATTGGAATATGTCAGATATGATTTTCGACCACAAATTCAGCAGTGCTCTGTCAAAATCATGAGTATATTAAGTTCTCGCATGGTCGGGCTTGTACAATTACTGCTAAAGTCAAATGCTGCAAGCTGTTTGATTGAGGATTATGCAGCCTGCCTAGAATTACGATCAGAGGATTCTCAGGTGATAGAGAACGCTAGTGATGATCCAGGTGTACTAATATTGCAGCTTCTAATTGACAATATCAGTCGGCCAGCTCCCAATATCACCCATTTGCTACTCAAATTTAATCTTGACAGTCCCATTGAGCGTACTGTGCTACAACCAAAATTTCATTACAGTTGCTTGAAGGTTATCCTTGAGATCTTGGAGAAGCTTTCAAAGCCTGATGTGAATATGTTACTTCATGAATTTGGTTTTCAGCTCCTTTATAAATTGTGTGTGGATCCACTAACATGTGATCCTGCGATGGATCTGTTGAGTAGTAAGAAGTATCAGTTTTTTGTAAAGCACCTAGATACGATTGGGGTTGCCCCACTTCCTAAAAGGAAGAACAACCAGGCCCTACGCGTCAGTTCCCTTCATCAGAGAGCTTGGCTGTTGAAACTACTAGCTATTGAACTTCATGTTGGTGATGTCAATAAATCCACTCACCTAGAAACATCTCGTAGCATCCTTGCGCATCTTTTTGGGCAGGAAACTTTCGAAACTGGAATTGATCACCTCATGTCTCATTCGTTTTCTCCTCAAGATGGTGTTGAACATGCTGGAACCCAAACTGTCGGGAAGAGTAAGGTGTTGGAGTTGCTTGAAGTGGTTCAGTTTAGATCCCCGGATACAAACACGAAGCTTTCTGAGATTGTTTCCAATACGAAATATGATTTGTTGGCAGAGGATGTAGTTTGTAATCCTACTTCTGGAAAGAGTGGTGTCCATTACTATTCGGAGCGTGGTGATCGATTGATAGACCTTGCGTCATTCCGTGATAAACTTTGGCAGAAATTCAATGCTGTTTATCCCCACTTGAGTAACATTGGAAGTGAAGCAGAGCTGAACGATGCAAAAGAAACAATTCAACAGTTGTTGAGATGGGGATGGAAGAACAATAAGAATGTTGAAGAGCAAGCTGCCCAACTCCATATGTTAACCGCCTGGTCGCAAGTTGTTGAGATCTCTGCTTCCCGAAGAATATCATCACTTGGACATCAATCTGAACTTCTATATCAGATTCTTGTAGCTGCTTTGACCGCTTCTGCTTCTCAAGATTGTTCATTAAAGATGGCATTTTTGTTGTGTCAGGTTGCATTGACATGCATGGCAAAGTTACGAGATGAAAGATTTTTATTCCCTGGTGGCTTTAGTTCTGATAATCAGGCATGTCTTGATATTATCATGGCAAAACAATTACCAAATGCAGCTTGTCATTCAATCCTGTTTAGGCTCATATTGGCAATTCTCAGACTTGAATCATCAGAAGCCTTAAGGAGACGGCAATATGCATTGCTCCTCAGCTATTTTCAGTATTGTCAGCATATGCTTGATCCAGATATCCCATCAACAGTTCTGCAATTTTTGTTGCTTGATGAGCAAGAGGGTGAAGATCTGGATCTCCAGAAGATCAATCGAGAACAAGCAGAACTTGCCCGTGCCAATTTCAATATTTTAAGAAAAGAAGCTCAATCTATTTTGGATTTGGTAATAAAAGATGCTACTCAAGGAAGTGAACTTGGGAAGACTATGGCACTCTATGTTTTGGATGCAATCATCTGTGTAGATCATGATAGATATTTCCTGGGCCAACTTCAAAGCAGGGGTTTCCTAAGATCTTGTCTTACAAACATCAGCAGCTTATCTTATCAGGATGGTGCACATTCTCGAGACTCAATGCAGCGAGCGCAAACTCTGGAGGCTGAACTTGCTTTGCTTTTGAGAATAAGCCATAAGTATGGGAAATCTGGAGCTCAGGTTATCTTTACAATGGGGGCTTTGGAGCATATTGCTTCATGCAGGGCGGTCAACGTTTTCGGAAGTTTGCGATGGATTGACACTAAGAATCAAAGAAATGTTTCTGTGGATATCAACAAGCAAAGGATGATTGTAACCCCTATTCTGAGATTGGTGTTTTCTCTGTTGTCTCTAGTTGATACATCCGAATTTTATGAGGTGAAGAATAAAGTTGTTCGGGAAGTCATAGAATTTGTCAAGGGACATAGATCACTTTTTGATCATGTTCTTCGGGAAGACATTTCCCAAGCTGATGAGTTGGTGATGGAGCAGATAAACCTTGTTGTTGGTATACTAAGCAAGGTTTGGCCATATGAAGAGAGTGACGAATCTGGCTTTGTTCAAGGTCTTTTTTGTTTGATGCATGCTCTTTTCTCTCGTGACTGTGAGACTCTAAGTTCTGCTCAATCAGTTCGATCTGTTGAGAATCACAGGAAAACAGAGCTTAACTCATTTCGAATATGCTTCAGCCTCAGCTCATATCTATATTTTCTAGTCACAAAGAAGTCCTTTAGACTGCAGGTCTCAGACATGCCTCCTGATTACAATGCTGCCGTTTCCTTTCAACAGCCAACATTGAGTTTGCTTGGATCTTTTCTCACTTCTTTAACAAGTGCTCTTGAAAGAGCTGCTGAGGAAAAATCCTTACTTCTTAATAGGATTCGAGACATAAATGAATTATCAAGGCAGGAGGTGGATGAAATTATCAATATGTATGCTCGGCAAGTATATGTTTCATCATCTGACAATATACAGAAAAGGAGGTATATTGCGATGGTGGAAATGTGCCATGTTGTCGGGAATAGAGATCAGTTAATAACTATATTACTTCCACTAGTGGAACATGTGCTGAATGTCTTCCTAAGCCATTTTCAGGACAGCTCTTTGGCATCTGATCCCGCTCGCTCTTTGAAGACAATTACATACGGTGCCAACTCTGGCCCAGAACAAGACATATCTTTGTTGTGCGGAAATCTTATTTTGACTTTAGAAAGACTCGAGTTACTTAGTGAGGACAAAATAGGCCACAATCTTAAAGTGTTTCGAAGATTAGTGACTTCGCTCAAGGAAATGACGATCCAAAAGTTGTCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nup192

Protein Analysis

1884

Amino Acids

212.61

Weight (kDa)

5.63

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup192 PF11894 26 - 1605 1.1e-102 Nuclear pore complex scaffold, nucleoporins 186/192/205
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 521, 2384, 2453, 2985
AarI CACCTGC 1 cut(s) 1187
AasI GACNNNNNNGTC 1 cut(s) 224
AatII GACGTC 1 cut(s) 228
Acc16I TGCGCA 1 cut(s) 3234
Acc36I ACCTGC 3 cut(s) 264, 1187, 5068
Acc65I GGTACC 1 cut(s) 938
AccB1I GGYRCC 4 cut(s) 938, 1625, 1799, 5486
AccB7I CCANNNNNTGG 1 cut(s) 2515
AccBSI CCGCTC 1 cut(s) 5459
AccI GTMKAC 1 cut(s) 4849
AccII CGCG 2 cut(s) 23, 3123
AccIII TCCGGA 1 cut(s) 2340
AclI AACGTT 3 cut(s) 574, 1074, 4572
AcoI YGGCCR 2 cut(s) 2804, 4865
AcuI CTGAAG 6 cut(s) 465, 756, 1514, 2061, 2162, 5008
AcyI GRCGYC 3 cut(s) 5, 225, 2497
AfiI CCNNNNNNNGG 8 cut(s) 633, 859, 1693, 2464, 2515, 3305, 3470, 5431
AflII CTTAAG 2 cut(s) 2053, 4033
AflIII ACRYGT 3 cut(s) 3008, 3121, 5401
AhdI GACNNNNNGTC 2 cut(s) 3526, 5078
AhlI ACTAGT 1 cut(s) 5392
AjnI CCWGG 8 cut(s) 219, 1260, 2365, 2761, 3111, 3704, 3901, 4344
AjuI GAANNNNNNNTTGG 2 cut(s) 3165, 3197
Alw44I GTGCAC 2 cut(s) 1920, 4419
AlwNI CAGNNNCTG 2 cut(s) 836, 2515
Ama87I CYCGRG 4 cut(s) 627, 858, 4428, 5555
Aor13HI TCCGGA 1 cut(s) 2340
ApaLI GTGCAC 2 cut(s) 1920, 4419
Asp700I GAANNNNTTC 5 cut(s) 1076, 3369, 3624, 4618, 5414
Asp718I GGTACC 1 cut(s) 938
AspLEI GCGC 5 cut(s) 40, 348, 2070, 3235, 4450
AspS9I GGNCC 9 cut(s) 47, 154, 197, 560, 1410, 1435, 3115, 4348, 5498
AsuC2I CCSGG 6 cut(s) 628, 629, 859, 860, 993, 3386
AsuII TTCGAA 4 cut(s) 97, 3258, 5014, 5602
AvaI CYCGRG 4 cut(s) 627, 858, 4428, 5555
AvaII GGWCC 3 cut(s) 154, 1410, 1435
BaeGI GKGCMC 2 cut(s) 1924, 4423
BalI TGGCCA 1 cut(s) 4867
BamHI GGATCC 1 cut(s) 2998
BanI GGYRCC 4 cut(s) 938, 1625, 1799, 5486
BanII GRGCYC 7 cut(s) 65, 84, 163, 363, 601, 1965, 4516
BarI GAAGNNNNNNTAC 6 cut(s) 1285, 1317, 1474, 1506, 3451, 3483
BauI CACGAG 2 cut(s) 713, 4935
BbsI GAAGAC 7 cut(s) 776, 2168, 4292, 4800, 5407, 5477, 5640
BbvCI CCTCAGC 3 cut(s) 4061, 5030, 5190
BceAI ACGGC 3 cut(s) 133, 4058, 5096
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 8 cut(s) 221, 1262, 2367, 2763, 3113, 3706, 3903, 4346
BciVI GTATCC 1 cut(s) 3382
BclI TGATCA 6 cut(s) 427, 1173, 2101, 2242, 3271, 4777
BcnI CCSGG 6 cut(s) 628, 629, 859, 860, 993, 3386
BcuI ACTAGT 1 cut(s) 5392
BfmI CTRYAG 2 cut(s) 1110, 5075
BfoI RGCGCY 1 cut(s) 41
BfrI CTTAAG 2 cut(s) 2053, 4033
BfuAI ACCTGC 3 cut(s) 264, 1187, 5068
BfuI GTATCC 1 cut(s) 3382
BglII AGATCT 5 cut(s) 382, 2916, 3723, 4153, 4376
Bme18I GGWCC 3 cut(s) 154, 1410, 1435
BmeRI GACNNNNNGTC 2 cut(s) 3526, 5078
BmeT110I CYCGRG 4 cut(s) 627, 858, 4428, 5555
BmgT120I GGNCC 9 cut(s) 47, 154, 197, 560, 1410, 1435, 3115, 4348, 5498
BmiI GGNNCC 7 cut(s) 940, 1377, 1627, 1801, 3000, 3325, 5488
BpiI GAAGAC 7 cut(s) 776, 2168, 4292, 4800, 5407, 5477, 5640
BplI GAGNNNNNCTC 6 cut(s) 52, 84, 66, 98, 4991, 5023
BpmI CTGGAG 8 cut(s) 101, 1025, 1449, 1882, 2264, 4148, 4478, 4530
Bpu10I CCTNAGC 5 cut(s) 4061, 4515, 5030, 5190, 5420
Bpu14I TTCGAA 4 cut(s) 97, 3258, 5014, 5602
BpuEI CTTGAG 9 cut(s) 147, 1892, 2517, 2933, 3285, 3598, 3798, 4251, 5606
BpuMI CCSGG 6 cut(s) 628, 629, 859, 860, 993, 3386
Bsa29I ATCGAT 1 cut(s) 3511
BsaBI GATNNNNATC 3 cut(s) 2453, 2541, 4158
BsaHI GRCGYC 3 cut(s) 5, 225, 2497
BsaI GGTCTC 1 cut(s) 5086
BsaJI CCNNGG 8 cut(s) 627, 858, 1485, 1890, 1929, 3384, 3901, 4345
BsaWI WCCGGW 2 cut(s) 1636, 2340
BsaXI ACNNNNNCTCC 6 cut(s) 588, 618, 1626, 1656, 4503, 4533
Bsc4I CCNNNNNNNGG 8 cut(s) 633, 859, 1693, 2464, 2515, 3305, 3470, 5431
Bse1I ACTGG 5 cut(s) 118, 1042, 1081, 1736, 3268
Bse3DI GCAATG 3 cut(s) 1242, 1402, 4052
Bse8I GATNNNNATC 3 cut(s) 2453, 2541, 4158
BseAI TCCGGA 1 cut(s) 2340
BseBI CCWGG 8 cut(s) 221, 1262, 2367, 2763, 3113, 3706, 3903, 4346
BseCI ATCGAT 1 cut(s) 3511
BseDI CCNNGG 8 cut(s) 627, 858, 1485, 1890, 1929, 3384, 3901, 4345
BseJI GATNNNNATC 3 cut(s) 2453, 2541, 4158
BseLI CCNNNNNNNGG 8 cut(s) 633, 859, 1693, 2464, 2515, 3305, 3470, 5431
BseMI GCAATG 3 cut(s) 1242, 1402, 4052
BseNI ACTGG 5 cut(s) 118, 1042, 1081, 1736, 3268
BseRI GAGGAG 5 cut(s) 8, 116, 609, 3288, 4049
BseSI GKGCMC 2 cut(s) 1924, 4423
BsgI GTGCAG 2 cut(s) 849, 1920
Bsh1236I CGCG 2 cut(s) 23, 3123
BshNI GGYRCC 4 cut(s) 938, 1625, 1799, 5486
BshVI ATCGAT 1 cut(s) 3511
BsiHKCI CYCGRG 4 cut(s) 627, 858, 4428, 5555
BsiSI CCGG 7 cut(s) 628, 859, 906, 993, 1637, 2341, 3386
BslFI GGGAC 7 cut(s) 106, 447, 760, 841, 1594, 2838, 4773
BslI CCNNNNNNNGG 8 cut(s) 633, 859, 1693, 2464, 2515, 3305, 3470, 5431
BsmBI CGTCTC 2 cut(s) 1342, 4033
BsmFI GGGAC 7 cut(s) 106, 447, 760, 841, 1594, 2838, 4773
BsmI GAATGC 1 cut(s) 1463
Bso31I GGTCTC 1 cut(s) 5086
BsoBI CYCGRG 4 cut(s) 627, 858, 4428, 5555
Bsp119I TTCGAA 4 cut(s) 97, 3258, 5014, 5602
Bsp13I TCCGGA 1 cut(s) 2340
Bsp1407I TGTACA 3 cut(s) 961, 1149, 2650
Bsp19I CCATGG 1 cut(s) 1929
BspDI ATCGAT 1 cut(s) 3511
BspEI TCCGGA 1 cut(s) 2340
BspFNI CGCG 2 cut(s) 23, 3123
BspHI TCATGA 5 cut(s) 886, 2616, 2959, 4330, 5651
BspLI GGNNCC 7 cut(s) 940, 1377, 1627, 1801, 3000, 3325, 5488
BspMAI CTGCAG 2 cut(s) 1114, 5079
BspMI ACCTGC 3 cut(s) 264, 1187, 5068
BspQI GCTCTTC 2 cut(s) 993, 3666
BspT104I TTCGAA 4 cut(s) 97, 3258, 5014, 5602
BspT107I GGYRCC 4 cut(s) 938, 1625, 1799, 5486
BspTI CTTAAG 2 cut(s) 2053, 4033
BspTNI GGTCTC 1 cut(s) 5086
BsrBI CCGCTC 1 cut(s) 5459
BsrDI GCAATG 3 cut(s) 1242, 1402, 4052
BsrGI TGTACA 3 cut(s) 961, 1149, 2650
BsrI ACTGG 5 cut(s) 118, 1042, 1081, 1736, 3268
BssECI CCNNGG 8 cut(s) 627, 858, 1485, 1890, 1929, 3384, 3901, 4345
BssNAI GTATAC 1 cut(s) 4850
BssNI GRCGYC 3 cut(s) 5, 225, 2497
BssSI CACGAG 2 cut(s) 713, 4935
BssT1I CCWWGG 2 cut(s) 1485, 1929
Bst1107I GTATAC 1 cut(s) 4850
Bst2BI CACGAG 2 cut(s) 713, 4935
Bst2UI CCWGG 8 cut(s) 221, 1262, 2367, 2763, 3113, 3706, 3903, 4346
Bst6I CTCTTC 8 cut(s) 319, 373, 993, 1910, 2214, 3335, 3666, 4869
BstACI GRCGYC 3 cut(s) 5, 225, 2497
BstAFI CTTAAG 2 cut(s) 2053, 4033
BstAPI GCANNNNNTGC 2 cut(s) 1670, 4193
BstAUI TGTACA 3 cut(s) 961, 1149, 2650
BstBI TTCGAA 4 cut(s) 97, 3258, 5014, 5602
BstDSI CCRYGG 2 cut(s) 1890, 1929
BstENI CCTNNNNNAGG 1 cut(s) 1691
BstFNI CGCG 2 cut(s) 23, 3123
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 5 cut(s) 40, 348, 2070, 3235, 4450
BstNI CCWGG 8 cut(s) 221, 1262, 2367, 2763, 3113, 3706, 3903, 4346
BstNSI RCATGY 9 cut(s) 1246, 2175, 3012, 3320, 3867, 3933, 4925, 5092, 5405
BstSFI CTRYAG 2 cut(s) 1110, 5075
BstSLI GKGCMC 2 cut(s) 1924, 4423
BstUI CGCG 2 cut(s) 23, 3123
BstV2I GAAGAC 7 cut(s) 776, 2168, 4292, 4800, 5407, 5477, 5640
BstXI CCANNNNNNTGG 1 cut(s) 4499
BstZ17I GTATAC 1 cut(s) 4850
Bsu15I ATCGAT 1 cut(s) 3511
BsuI GTATCC 1 cut(s) 3382
BsuTUI ATCGAT 1 cut(s) 3511
BtgI CCRYGG 2 cut(s) 1890, 1929
BtgZI GCGATG 3 cut(s) 3035, 4603, 5345
BtsI GCAGTG 2 cut(s) 649, 2606
BtsIMutI CAGTG 4 cut(s) 369, 649, 2221, 2606
BveI ACCTGC 3 cut(s) 264, 1187, 5068
CaiI CAGNNNCTG 2 cut(s) 836, 2515
CciI TCATGA 5 cut(s) 886, 2616, 2959, 4330, 5651
CfoI GCGC 5 cut(s) 40, 348, 2070, 3235, 4450
Cfr13I GGNCC 9 cut(s) 47, 154, 197, 560, 1410, 1435, 3115, 4348, 5498
Cfr9I CCCGGG 2 cut(s) 627, 858
ClaI ATCGAT 1 cut(s) 3511
CpoI CGGWCCG 1 cut(s) 154
CseI GACGC 5 cut(s) 13, 827, 2486, 3112, 3516
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CspI CGGWCCG 1 cut(s) 154
DraI TTTAAA 2 cut(s) 1603, 1680
DrdI GACNNNNNNGTC 1 cut(s) 224
DriI GACNNNNNGTC 2 cut(s) 3526, 5078
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 2 cut(s) 2804, 4865
Eam1104I CTCTTC 8 cut(s) 319, 373, 993, 1910, 2214, 3335, 3666, 4869
Eam1105I GACNNNNNGTC 2 cut(s) 3526, 5078
EarI CTCTTC 8 cut(s) 319, 373, 993, 1910, 2214, 3335, 3666, 4869
EciI GGCGGA 1 cut(s) 126
Ecl136II GAGCTC 5 cut(s) 82, 161, 599, 1963, 4514
Eco130I CCWWGG 2 cut(s) 1485, 1929
Eco24I GRGCYC 7 cut(s) 65, 84, 163, 363, 601, 1965, 4516
Eco31I GGTCTC 1 cut(s) 5086
Eco32I GATATC 2 cut(s) 4102, 4630
Eco47I GGWCC 3 cut(s) 154, 1410, 1435
Eco53kI GAGCTC 5 cut(s) 82, 161, 599, 1963, 4514
Eco57I CTGAAG 6 cut(s) 465, 756, 1514, 2061, 2162, 5008
Eco88I CYCGRG 4 cut(s) 627, 858, 4428, 5555
EcoICRI GAGCTC 5 cut(s) 82, 161, 599, 1963, 4514
EcoNI CCTNNNNNAGG 1 cut(s) 1691
EcoO109I RGGNCCY 1 cut(s) 3115
EcoRII CCWGG 8 cut(s) 219, 1260, 2365, 2761, 3111, 3704, 3901, 4344
EcoRV GATATC 2 cut(s) 4102, 4630
EcoT14I CCWWGG 2 cut(s) 1485, 1929
EcoT22I ATGCAT 4 cut(s) 868, 3869, 4054, 4923
EcoT38I GRGCYC 7 cut(s) 65, 84, 163, 363, 601, 1965, 4516
ErhI CCWWGG 2 cut(s) 1485, 1929
Esp3I CGTCTC 2 cut(s) 1342, 4033
FaqI GGGAC 7 cut(s) 106, 447, 760, 841, 1594, 2838, 4773
FauI CCCGC 3 cut(s) 57, 551, 5464
FauNDI CATATG 4 cut(s) 2190, 3693, 4086, 4870
FbaI TGATCA 6 cut(s) 427, 1173, 2101, 2242, 3271, 4777
FblI GTMKAC 1 cut(s) 4849
FriOI GRGCYC 7 cut(s) 65, 84, 163, 363, 601, 1965, 4516
FspI TGCGCA 1 cut(s) 3234
GlaI GCGC 5 cut(s) 39, 347, 2069, 3234, 4449
GsuI CTGGAG 8 cut(s) 101, 1025, 1449, 1882, 2264, 4148, 4478, 4530
HaeII RGCGCY 1 cut(s) 41
HapII CCGG 7 cut(s) 628, 859, 906, 993, 1637, 2341, 3386
HgaI GACGC 5 cut(s) 13, 827, 2486, 3112, 3516
HhaI GCGC 5 cut(s) 40, 348, 2070, 3235, 4450
Hin1I GRCGYC 3 cut(s) 5, 225, 2497
Hin6I GCGC 5 cut(s) 38, 346, 2068, 3233, 4448
HinP1I GCGC 5 cut(s) 38, 346, 2068, 3233, 4448
HincII GTYRAC 2 cut(s) 3699, 4570
HindII GTYRAC 2 cut(s) 3699, 4570
HindIII AAGCTT 3 cut(s) 1760, 2927, 3401
HpaI GTTAAC 1 cut(s) 3699
HpaII CCGG 7 cut(s) 628, 859, 906, 993, 1637, 2341, 3386
Hpy99I CGWCG 2 cut(s) 115, 154
HpyCH4IV ACGT 4 cut(s) 225, 574, 1074, 4572
HpySE526I ACGT 4 cut(s) 225, 574, 1074, 4572
Hsp92I GRCGYC 3 cut(s) 5, 225, 2497
HspAI GCGC 5 cut(s) 38, 346, 2068, 3233, 4448
Kpn2I TCCGGA 1 cut(s) 2340
KpnI GGTACC 1 cut(s) 942
Ksp22I TGATCA 6 cut(s) 427, 1173, 2101, 2242, 3271, 4777
KspAI GTTAAC 1 cut(s) 3699
LguI GCTCTTC 2 cut(s) 993, 3666
MaeII ACGT 4 cut(s) 225, 574, 1074, 4572
MbiI CCGCTC 1 cut(s) 5459
MlsI TGGCCA 1 cut(s) 4867
MluI ACGCGT 1 cut(s) 3121
MluNI TGGCCA 1 cut(s) 4867
MlyI GAGTC 4 cut(s) 2209, 4427, 4942, 5547
MmeI TCCRAC 5 cut(s) 132, 1246, 1538, 1879, 3333
Mox20I TGGCCA 1 cut(s) 4867
Mph1103I ATGCAT 4 cut(s) 868, 3869, 4054, 4923
MroI TCCGGA 1 cut(s) 2340
MroXI GAANNNNTTC 5 cut(s) 1076, 3369, 3624, 4618, 5414
MscI TGGCCA 1 cut(s) 4867
MslI CAYNNNNRTG 4 cut(s) 3007, 3183, 3862, 4497
Msp20I TGGCCA 1 cut(s) 4867
MspA1I CMGCKG 3 cut(s) 52, 395, 548
MspCI CTTAAG 2 cut(s) 2053, 4033
MspI CCGG 7 cut(s) 628, 859, 906, 993, 1637, 2341, 3386
MssI GTTTAAAC 1 cut(s) 1603
Mva1269I GAATGC 1 cut(s) 1463
MvaI CCWGG 8 cut(s) 221, 1262, 2367, 2763, 3113, 3706, 3903, 4346
MvnI CGCG 2 cut(s) 23, 3123
NciI CCSGG 6 cut(s) 628, 629, 859, 860, 993, 3386
NcoI CCATGG 1 cut(s) 1929
NdeI CATATG 4 cut(s) 2190, 3693, 4086, 4870
NlaIV GGNNCC 7 cut(s) 940, 1377, 1627, 1801, 3000, 3325, 5488
NmeAIII GCCGAG 1 cut(s) 5257
NmuCI GTSAC 4 cut(s) 4880, 4937, 5053, 5611
NsbI TGCGCA 1 cut(s) 3234
NsiI ATGCAT 4 cut(s) 868, 3869, 4054, 4923
NspI RCATGY 9 cut(s) 1246, 2175, 3012, 3320, 3867, 3933, 4925, 5092, 5405
NspV TTCGAA 4 cut(s) 97, 3258, 5014, 5602
PaeI GCATGC 2 cut(s) 1246, 4925
PaeR7I CTCGAG 2 cut(s) 4428, 5555
PagI TCATGA 5 cut(s) 886, 2616, 2959, 4330, 5651
PaqCI CACCTGC 1 cut(s) 1187
PciI ACATGT 2 cut(s) 3008, 5401
PciSI GCTCTTC 2 cut(s) 993, 3666
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 1 cut(s) 1463
PdmI GAANNNNTTC 5 cut(s) 1076, 3369, 3624, 4618, 5414
PflFI GACNNNGTC 1 cut(s) 1211
PflMI CCANNNNNTGG 1 cut(s) 2515
PfoI TCCNGGA 1 cut(s) 991
PleI GAGTC 4 cut(s) 2208, 4427, 4942, 5547
PmeI GTTTAAAC 1 cut(s) 1603
PpsI GAGTC 4 cut(s) 2208, 4427, 4942, 5547
PscI ACATGT 2 cut(s) 3008, 5401
PsiI TTATAA 4 cut(s) 521, 2384, 2453, 2985
Psp124BI GAGCTC 5 cut(s) 84, 163, 601, 1965, 4516
Psp1406I AACGTT 3 cut(s) 574, 1074, 4572
Psp6I CCWGG 8 cut(s) 219, 1260, 2365, 2761, 3111, 3704, 3901, 4344
PspGI CCWGG 8 cut(s) 219, 1260, 2365, 2761, 3111, 3704, 3901, 4344
PspN4I GGNNCC 7 cut(s) 940, 1377, 1627, 1801, 3000, 3325, 5488
PspPI GGNCC 9 cut(s) 47, 154, 197, 560, 1410, 1435, 3115, 4348, 5498
PspXI VCTCGAGB 1 cut(s) 5555
PsrI GAACNNNNNNTAC 2 cut(s) 2614, 2646
PstI CTGCAG 2 cut(s) 1114, 5079
PstNI CAGNNNCTG 2 cut(s) 836, 2515
PsyI GACNNNGTC 1 cut(s) 1211
PvuII CAGCTG 2 cut(s) 395, 548
RseI CAYNNNNRTG 4 cut(s) 3007, 3183, 3862, 4497
Rsr2I CGGWCCG 1 cut(s) 154
RsrII CGGWCCG 1 cut(s) 154
SacI GAGCTC 5 cut(s) 84, 163, 601, 1965, 4516
SapI GCTCTTC 2 cut(s) 993, 3666
Sau96I GGNCC 9 cut(s) 47, 154, 197, 560, 1410, 1435, 3115, 4348, 5498
SchI GAGTC 4 cut(s) 2209, 4427, 4942, 5547
SfcI CTRYAG 2 cut(s) 1110, 5075
Sfr274I CTCGAG 2 cut(s) 4428, 5555
SfuI TTCGAA 4 cut(s) 97, 3258, 5014, 5602
SinI GGWCC 3 cut(s) 154, 1410, 1435
SlaI CTCGAG 2 cut(s) 4428, 5555
SmaI CCCGGG 2 cut(s) 629, 860
SmiI ATTTAAAT 1 cut(s) 1680
SmiMI CAYNNNNRTG 4 cut(s) 3007, 3183, 3862, 4497
SpeI ACTAGT 1 cut(s) 5392
SphI GCATGC 2 cut(s) 1246, 4925
SspI AATATT 2 cut(s) 2775, 4213
SstI GAGCTC 5 cut(s) 84, 163, 601, 1965, 4516
StyI CCWWGG 2 cut(s) 1485, 1929
SwaI ATTTAAAT 1 cut(s) 1680
TaiI ACGT 4 cut(s) 228, 577, 1077, 4575
TaqII GACCGA 1 cut(s) 171
TatI WGTACW 4 cut(s) 961, 1149, 2650, 2767
TscAI CASTG 4 cut(s) 376, 656, 2221, 2606
TseFI GTSAC 4 cut(s) 4880, 4937, 5053, 5611
Tsp45I GTSAC 4 cut(s) 4880, 4937, 5053, 5611
TspGWI ACGGA 2 cut(s) 272, 3524
TspMI CCCGGG 2 cut(s) 627, 858
TspRI CASTG 4 cut(s) 376, 656, 2221, 2606
Tth111I GACNNNGTC 1 cut(s) 1211
Van91I CCANNNNNTGG 1 cut(s) 2515
Vha464I CTTAAG 2 cut(s) 2053, 4033
VneI GTGCAC 2 cut(s) 1920, 4419
VpaK11BI GGWCC 3 cut(s) 154, 1410, 1435
XagI CCTNNNNNAGG 1 cut(s) 1691
XbaI TCTAGA 2 cut(s) 590, 2299
XceI RCATGY 9 cut(s) 1246, 2175, 3012, 3320, 3867, 3933, 4925, 5092, 5405
XhoI CTCGAG 2 cut(s) 4428, 5555
XmaI CCCGGG 2 cut(s) 627, 858
XmiI GTMKAC 1 cut(s) 4849
XmnI GAANNNNTTC 5 cut(s) 1076, 3369, 3624, 4618, 5414
ZraI GACGTC 1 cut(s) 226
Zsp2I ATGCAT 4 cut(s) 868, 3869, 4054, 4923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.